New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3299162	43 (1.120)	4 (0.110)	4/300	NT	7.5%	coding (15/1245 nt)	mtr	tryptophan transporter of high affinity
	?	CP009273	= 3299337	58 (1.580)					coding (1883/1890 nt)	deaD	ATP‑dependent RNA helicase

GTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGC  >  CP009273/3298904‑3299335                                                                                                                                                                                                                                                                   |                                                                                                                                                                              gTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGNACCAGGTAAAGCTCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATg                                                                                                                                                                <  1:659563/274‑1 (MQ=255)                                             tgtCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCNGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCa                                                                                                                   <  1:515884/275‑1 (MQ=255)                                                  aaaCTCGAACCGATTCTGTAATTCAGGGTAGCTTCCAGAATCATCAAGACGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGANATGACCACTGTCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  1:654322/275‑1 (MQ=255)                                                      aaaaaaaaaagntNNAATTCATGTGAGCTCACAGAAGCAACAAGCCGGAAAGCAGCATACAGCACCAGGTAAAGATCAGCGCCGCCAGTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGGTGCCATGAGGGCTTCGCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGt                                                                                                          <  2:568151/263‑1 (MQ=255)                                                       cGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGt                                                                                                          <  1:167129/274‑1 (MQ=255)                                                        aaaCCGATTCTGTAATTCAGGTTATCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTAc                                                                                                        <  1:33506/274‑1 (MQ=255)                                                                            gTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              >  1:568160/1‑249 (MQ=255)                                                                              tAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCTCGCCGTCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTAAAAAAAACa                                                                                  >  1:623382/1‑275 (MQ=255)                                                                                                            gcaTACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCgggg                                                    <  1:89567/275‑1 (MQ=255)                                                                                                                         ggTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAt                                                                                                                  >  1:220006/1‑200 (MQ=255)                                                                                                                             aaGAGCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  2:220001/200‑1 (MQ=255)                                                                                                                              aGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATACTCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTACTGTTGCCATGACGGCTTCGCGCCAGTGAAAAATAGTGCGACTGCGTTGTTATGc                                                                                                                    >  2:367015/1‑193 (MQ=255)                                                                                                                                aTCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTtc                                                                                                                                                        >  2:617226/1‑155 (MQ=255)                                                                                                                                aTCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACGGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGTACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGcc                                                                       >  1:671334/1‑236 (MQ=255)                                                                                                                                  cAGCGCCGCCATTGATCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTg                                                                                                                <  1:367021/193‑1 (MQ=255)                                                                                                                                    gcgcCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTtctctc                                                                                                                                                    <  1:617235/155‑1 (MQ=255)                                                                                                                                         gacATTGAACAGAAACACCGCGCCCAGGACATAACCACTGGCAGAGAAAACATCCCTGCGCAAATAATGGTGCCGCCGATAATCACCACGCAGCCAAGCAGCGACGGTGACGTTTGGGTTGTGGTTAGTGTTGCCATGAGGGCTTCTCTCAAGTGAAAAATAGTGCGACTGCGTTGTGATGCATTGCACTGTACCAGTACACGAGTACAAGAGAAAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGtt                        <  1:94158/272‑1 (MQ=255)                                                                                                                                                              gCCCCTGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGCGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGc             <  1:395531/264‑1 (MQ=255)                                                                                                                                                               ccccGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGatgcgtaatcatcgctgaacagcgaacacaatctgtaaaataatatatacagccccgatttttaccatcggggctttttttctgtcttttgtactcgtgtactggtacagtgcaatgcataacaacgaagtcgcactatttttcactggagagaagccctattggcaaccatg  >  2:713546‑M1/1‑101 (MQ=255)                                                                                                                                                                   tgaCATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGatgcgtaatcatcgctgaacagcgaacacaatctgtaaaataatatatacagccccgatttttaccatcggggctttttttctgtcttttgtactcgtgtactggtacagtgcaatgcataacaacgcagtcgcactatttttcactggagagaagccctcatgg          <  1:713556‑M1/261‑166 (MQ=255)                                                                                                                                                                              cTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCgttg                                                                                                                          >  2:101556/1‑139 (MQ=255)                                                                                                                                                                               tGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAt                                                                                                                  >  2:496410/1‑146 (MQ=255)                                                                                                                                                                                 gCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGatgcgtaatcatcgctgaacagcgaacacaatctgtaaaataatatatacggccccgatttttaccatcggggctttttttctgtcttttgtactcgtgtactggtacagtgcaatgcataacaacgcagt                                            >  1:584772‑M1/1‑83 (MQ=255)                                                                                                                                                                                  cAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTAt                                                                                                                      <  1:101557/139‑1 (MQ=255)                                                                                                                                                                                   agagAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  1:496417/146‑1 (MQ=255)                                                                                                                                                                                     agaAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGatgcgtaatcatcgctgaacagcgaacacaatctgtaaaataatatatacggccccgatttttaccatcggggctttttttctgtcttttgtactcgtgtactggtacagtgcaatgcataacaacgcagtcgca                                        <  2:584763‑M1/214‑136 (MQ=255)                                                                                                                                                                                                 tGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGAc                                                                                                                                 >  1:374527/1‑113 (MQ=255)                                                                                                                                                                                                     ccAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCg                                                                                                                             <  2:374521/113‑1 (MQ=255)                                                                                                                                                                                                                gccgccGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCgt                                                                                                                            >  2:464787/1‑103 (MQ=255)                                                                                                                                                                                                                 ccgccgATAATCACCACGCTGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTAtttt                                    >  1:611670/1‑190 (MQ=255)                                                                                                                                                                                                                 ccgccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTg                                                                                                                                                                     >  2:339004/1‑61 (MQ=255)                                                                                                                                                                                                                 ccgccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTaa                                                             >  1:664342/1‑165 (MQ=255)                                                                                                                                                                                                                  cgccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAt                                                                                                                  >  1:395044/1‑111 (MQ=255)                                                                                                                                                                                                                    ccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAt                                                                                                                  >  1:301299/1‑109 (MQ=255)                                                                                                                                                                                                                    ccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCCTCTCTCCAGTGAAAAATAGTGCGACTGCgttgtt                                                                                                                        <  1:464794/103‑1 (MQ=255)                                                                                                                                                                                                                     cgATAATCACCACGCTGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAg                                <  2:611661/190‑1 (MQ=255)                                                                                                                                                                                                                     cgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCAt                                                                                                                                                                 <  1:339010/61‑1 (MQ=255)                                                                                                                                                                                                                     cgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAAt                                                         <  2:664333/165‑1 (MQ=255)                                                                                                                                                                                                                      gATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  2:395037/111‑1 (MQ=255)                                                                                                                                                                                                                        tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCa                                                                                                                                                                  >  1:226379/1‑57 (MQ=255)                                                                                                                                                                                                                        tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  2:301293/109‑1 (MQ=255)                                                                                                                                                                                                                         aaTCACCACGCCGCCAAGCAGCGACGGTGACGTTTGAGTGGTGGTTAGTGTTGCCATGAGGGCTtc                                                                                                                                                        >  1:7110/1‑66 (MQ=255)                                                                                                                                                                                                                            caccacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAg                                                                                                                                                              <  2:226374/57‑1 (MQ=255)                                                                                                                                                                                                                             accacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTtctctc                                                                                                                                                    <  2:7110/66‑1 (MQ=255)                                                                                                                                                                                                                                                aCGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCgt                                                                                                                            >  1:109424/1‑71 (MQ=255)                                                                                                                                                                                                                                                    tGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCgttgtt                                                                                                                        <  2:109423/71‑1 (MQ=255)                                                                                                                                                                                                                                                           tGGGTGGTGGATAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAt                                                                                                                  >  1:706681/1‑70 (MQ=255)                                                                                                                                                                                                                                                               tggtggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCa                                                                                                              <  2:706671/70‑1 (MQ=255)                                                                                                                                                                                                                                                                  tggtTAGTGTTGCCATGAGGGCTTATCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGcc                                                                       >  1:497045/1‑106 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                              GTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGC  >  CP009273/3298904‑3299335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.