New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3317451	22 (0.570)	6 (0.170)	5/296	NT	22.3%	coding (820/849 nt)	folP	7,8‑dihydropteroate synthase
	?	CP009273	= 3317791	21 (0.580)					coding (480/849 nt)	folP	7,8‑dihydropteroate synthase

GGGCCAGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGCTGACTCCAGCATATAGCCAGAAATACGCGTGTCTTTACCAATAATAATCTTACGGGAGCCGTGGCGCGCCAGCACTTTACCCGCGGCCCAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGC  >  CP009273/3317197‑3317722                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                gggCCAGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGCTGACTCCAGCATATAGCCAGAAATACGCGTGTCTTTACCAATAATAATCTTACGGGAGCCGTGGCGCGCCAGCACTTTACCCGCGGCCCAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCTCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCAacc                                                                                                                                                                                                                                                             >  1:379962/1‑275 (MQ=255)      aGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGCTGACTCCAGCAGATAGCCAGAAATACGCGTGTCTTTACCAATAATAATCTTACGGGAGCCGTGGCGCNCCAGCACTTTATCCGCGGCCCAACCCAGCTTAAGCACAAAAGCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCAt                                                                                                                                                                                                                                                         <  1:669528/274‑1 (MQ=255)                                          cGCTTCCAGTGCTGACTCCAGCATATAGCCAGAAATACGCGTGTCTTTACCAATAATAATCTTACGGGAGCCGTGGCGCGCCAGCACTTTACCCGCGGCCCAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaaga                                                                                                                                                                                                                     >  1:353229‑M1/1‑214 (MQ=255)                                                                                                                   tGGCGCGCCAGCACTTTACCCGCGGCCCAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATTAACACGACTGATGTGCGCGCCTTGCATTGCGGCAATGACCGCCCAGGCCAGACTACCGCTCAGGCGCTCGGCCNGCTCCAccg                                                                                                                                           >  2:271405/1‑273 (MQ=255)                                                                                                                                         cgccccAACCCAGCTCAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATACCACCGGTACCGAAATATTCACGATTACTCATAGCGTTTGTTTGCCTTGGCAGACAGAGTGGCTTCAACCACCAGCATGGCTTGTACGCTTCCTCAGACGATATGAACACGACTGATCTGCGCGCCTTGCCATGCGGCAAGGACCCCACAGGCAAGACCAGCGCCCAGGCGGGCGGAGGGCACCACGTGCAGCAGACACCCAatctacca                                                                                                                     >  2:498468/4‑270 (MQ=255)                                                                                                                                              cAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTc                                                                                                                <  1:271410/275‑1 (MQ=255)                                                                                                                                                           gCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGNATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCGCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATCTTCGTGACATACccac                                                                                                   >  1:649463/1‑275 (MQ=255)                                                                                                                                                           gCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGA                                                                                                                                                                                                                                                                                 >  2:330184‑M1/1‑101 (MQ=255)                                                                                                                                                               aaaaTCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGcagacaga                                                                                                                                                                                                                                                                             <  1:330190/101‑1 (MQ=255)                                                                                                                                                                       gtgtGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGAagtgaatctctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccataactattcattactggcgcgcctggctgaatttcaccatttcaacctgccgctgttggtgggtatgtcacgaaaatc                                                                                       <  1:368271‑M1/275‑187 (MQ=255)                                                                                                                                                                            aTCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGAGATGCGCGCCTTNCATTGCGGCAATGACCGCACAGGCCAGACTACCGCCCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACAAACAGCGGCAGGTTGa                                                                                  >  1:660283/1‑275 (MQ=255)                                                                                                                                                                                gcgcATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGcagac                                                                                                                                                                                                                                                                                <  2:33100/81‑1 (MQ=255)                                                                                                                                                                                                 ccACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGt                                                                                                                                                                                                                                  >  1:40644/1‑110 (MQ=255)                                                                                                                                                                                                     gAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATg                                                                                                                                                                                                                              <  2:40644/110‑1 (MQ=255)                                                                                                                                                                                                         cccATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccata                                                                                                                                                                   >  2:370443‑M1/1‑55 (MQ=255)                                                                                                                                                                                                          ccATCGGTACCTAAATATTTACGATTACTCATAGCGTTTGTTTGCCTTTGCAGACAGAGTTGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACa                                                                                                          <  1:367985/221‑1 (MQ=255)                                                                                                                                                                                                             tCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccataacta                                                                                                                                                               <  1:370449‑M1/165‑115 (MQ=255)                                                                                                                                                                                                                gTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCAccc                                                                                                                                                                                                                                                             >  1:518268/1‑68 (MQ=255)                                                                                                                                                                                                                    cGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCAt                                                                                                                                                                                                                                                         <  2:518261/68‑1 (MQ=255)                                                                                                                                                                                                                                  ttACTCATTGCGTTTGTTTTCCTTTTCCGTCAGTGTGGCTTCCCCCCCCCGCATCGCTTCTGCTGTTCCTTTGACGTCATCCACACGAATGNTGTGCGCGCCTTGCATTGCGGCCATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGTGAGTACTGAATAGCTATGGGAGAGAtttt                            <  1:498475/275‑1 (MQ=255)                                                                                                                                                                                                                                           gCGTTTGTTTTCCTTTGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccata                                                                                                                                                                   >  1:613548‑M1/1‑21 (MQ=255)                                                                                                                                                                                                                                              tttgtttTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCg                                                                                                                                                                    >  1:678646/1‑127 (MQ=255)                                                                                                                                                                                                                                               ttgtttTCCTTTGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccataacta                                                                                                                                                               <  2:613539‑M1/131‑115 (MQ=255)                                                                                                                                                                                                                                                tgtttTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGt                                                                                                                                                                                                                                             >  1:713733/1‑52 (MQ=255)                                                                                                                                                                                                                                                tgtttTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGAc                                                                                                                                                                                       >  1:663077/1‑106 (MQ=255)                                                                                                                                                                                                                                                tgtttTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGtt                                                                                                                                          >  2:308725/1‑151 (MQ=255)                                                                                                                                                                                                                                                  ttttCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCa                                                                                                                                                                <  2:678637/127‑1 (MQ=255)                                                                                                                                                                                                                                                    ttCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCt                                                                                                                                                                                                                                         <  2:713723/52‑1 (MQ=255)                                                                                                                                                                                                                                                    ttCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGca                                                                                                                                                                                   <  2:663068/106‑1 (MQ=255)                                                                                                                                                                                                                                                    ttCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTcagc                                                                                                                                      <  1:308731/151‑1 (MQ=255)                                                                                                                                                                                                                                                         ttGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGgc                                                             >  2:437437/1‑219 (MQ=255)                                                                                                                                                                                                                                                          tGCAGAagtgaatcgctactttattgagcaaatagcacgttgcgagcaggcgggtatcgcaaaagagaaattgttgctcgaccccggattcggtttcggtaaaaatctctcccataactattcat                                                                                                                                                          <  1:531248‑M1/125‑120 (MQ=255)                                                                                                                                                                                                                                                            cagacagaGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCCCAGCCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTGTCGTGCCCTCCCCACCAACACCAGCAGGGTGAAAGGGGGACATTCAGCCAGGCGACCCAGCAACGAAGAGTTGTGGGGGAGGATTTTACCGAACCCGAAACCGGAGGCGaac  >  2:117441/1‑273 (MQ=255)                                                                                                                                                                                                                                                             agacagaGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGgcgcgc                                                         <  1:437444/219‑1 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                GGGCCAGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGCTGACTCCAGCATATAGCCAGAAATACGCGTGTCTTTACCAATAATAATCTTACGGGAGCCGTGGCGCGCCAGCACTTTACCCGCGGCCCAACCCAGCTTAAGCACAAAATCAGGTGTGATCGGCGCATCCCCTACACGACCACGAATCCCATCGGTACCGAAATATTTACGATTACTCATAGCGTTTGTTTTCCTTTGCAGACAGAGTGGCTTCCACCACCCGCATCGCTTCTACGGTTTCTTTGACGTCATGAACACGAATGATGTGCGCGCCTTGCATTGCGGCAATGACCGCACAGGCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGC  >  CP009273/3317197‑3317722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.