New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3317451	22 (0.570)	6 (0.170)	5/296	NT	22.3%	coding (820/849 nt)	folP	7,8‑dihydropteroate synthase
	?	CP009273	= 3317791	21 (0.580)					coding (480/849 nt)	folP	7,8‑dihydropteroate synthase

GCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATGACTTCTGGTTTGGATGTATCGACTGAGATCCAGACTTCGAAGCGTTGAGCAATTGCCTCAACCACAGGAATAACACGTTGCAACTCTTCTTCAACG  >  CP009273/3317549‑3318061                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                               gCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGAGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTATGAAAAGACATCGTCATACTACGGAGCTTc                                                                                                                                                                                                                                                >  1:310881/1‑275 (MQ=255)           cGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGt                                                                                                                                                                                                                                       >  1:221451/1‑274 (MQ=255)           cGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGAAGGGTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTCGGGGAGAGACTATTACCGAAACCGAATCCTGGGTCGAGCAACAATTTCTCTTTTGCGATAACCGCCTGCACGCAACGGGCTATTTGCTCAAAAAATTAGCGATACAATTCTGACAAGACATCGTCATACTCCGGAGCTTCCTGCATggg                                                                                                                                                                                                                                       >  2:199283/1‑273 (MQ=255)                                             attccaaaTCATCGATTTTCGTCACAGCCCCACGCACGGCTGCAGGTGTAAATGTTGCTCTTCAGGCCTGCGCGCAAGTAATGAAGAGTTATGTGAGAGATTGTTCCCGAACCCGAATCCGGGGTCACGCAAACATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCGTCCTGCATGGTTTTTGGATTGCCCTGCATATGCATCAGACacaccg                                                                                                                                                                                                    <  2:310875/269‑1 (MQ=255)                                                cccAATCATCGATTTACGTGACAGACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAANTAGCGATTCACTTCTGCAAAGACATCGTAATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATAAGACaaaccggta                                                                                                                                                                                                 >  1:496578/1‑275 (MQ=255)                                                          gATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCAGTTTc                                                                                                                                                                                       >  1:245022/1‑275 (MQ=255)                                                          gATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGAGATTCACTtctgcaaaggaaaacaaacgctatgagtaatcgtaaatatttcggtaccgatgggattcgtggtcgtgtaggggatgcgccgatcacac                                                                                                                                                                                       <  1:368271‑M2/275‑90 (MQ=255)                                                                                    cGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGtt                                                                                                                                                             >  1:213645/1‑275 (MQ=255)                                                                                              aaaTGGTGAAATTCACCCAGGCGCGCCAGTAATGATTAGTTATGGGGGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTGTTGCGATACCCGCCTGCTCGCAACGGGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCACACTTCGGAGCTACCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGa                                                                                                                                                   <  2:649454/275‑1 (MQ=255)                                                                                                     tacaTTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGAAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGat                                                                                                                                             <  1:200269/271‑1 (MQ=255)                                                                                                        ggtcggCCAGGCTCGCCGGGAAGGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGatat                                                                                                                                           <  2:221446/268‑1 (MQ=255)                                                                                                         aacatccAGGCCCGCCAGTCATGAATATTTATGGGTGAGATTTTTACCGAAACCGAATCCGGGTTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTGCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCgg                                                                                                                                               <  2:91780/263‑1 (MQ=255)                                                                                                                             aTGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgca                                                                                                                                                                                                                                                                          <  1:531248‑M2/125‑7 (MQ=255)                                                                                                                                 aTAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGa                                                                                                                                                                                                                                                                      <  2:531240/125‑1 (MQ=255)                                                                                                                                  tAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgcaaaggaaaacaaacgctatgagtaatcgtaaatatttcggtaccga                                                                                                                                                                                                                             <  1:370449‑M2/165‑52 (MQ=255)                                                                                                                                  tAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgcaaaggaaaacaa                                                                                                                                                                                                                                                               <  2:613539‑M2/131‑18 (MQ=255)                                                                                                                                  tAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCg                                                                                                                >  1:287202/1‑274 (MQ=255)                                                                                                                                      tATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgcaaaggaaaacaaacgctatgagtaatcgtaaatatttcggtaccgatggg                                                                                                                                                                                                                         >  2:370443‑M2/1‑110 (MQ=255)                                                                                                                                      tATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgcaaaggaaaacaaacgc                                                                                                                                                                                                                                                           >  1:613548‑M2/1‑110 (MQ=255)                                                                                                                                               gaTTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGat                                                                                                                                             >  2:654737/1‑232 (MQ=255)                                                                                                                                                   tttACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCa                                                                                                                                         <  1:654746/232‑1 (MQ=255)                                                                                                                                                                            aGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATGTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGa                                                                                                                                                                                                                                >  1:697273/1‑120 (MQ=255)                                                                                                                                                                                   aTTTCTTTTTGGCGATACCCGCTTGCTCTCATCGTTCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATGACTTCTGGTTTGGATGTATCGACTGAGATCCAGa                                                                <  2:496571/273‑1 (MQ=255)                                                                                                                                                                                      tctcTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGc                                                                                                                                                                                                                 >  1:529857/1‑125 (MQ=255)                                                                                                                                                                                        tctTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTtctgcaaaggaaaacaaacgctatgagtaatcgtaaatatttcggtaccgatgggattcgtggtcgtgtaggggatgcgccgatcacacctgattttgtgcttaagctgggttgggccgcgggtaaagtgctggcgcgccacggctcccgtaagattattattggtaaagacacgcgtatttctggctatatgctggagtcagcactggaagcg                                                          >  1:353229‑M2/1‑60 (MQ=255)                                                                                                                                                                                          ttttGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCa                                                                                                                                                                                                             <  2:529849/125‑1 (MQ=255)                                                                                                                                                                                                                               tCAATAAAGTAGCGATTCACTTCTGCAAAGACATc                                                                                                                                                                                                                                                                  >  1:586084/1‑35 (MQ=255)                                                                                                                                                                                                                               tCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCa                                                                                                                                                                                                                                           >  1:520206/1‑58 (MQ=255)                                                                                                                                                                                                                                   tAAAGTAGCGATTCACTTCTGCAAAGACATCGTCa                                                                                                                                                                                                                                                              <  2:586075/35‑1 (MQ=255)                                                                                                                                                                                                                                   tAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGt                                                                                                                                                                                                                                       <  2:520199/58‑1 (MQ=255)                                                                                                                                                                                                                                               tCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCAGATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTTCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATGACTTCTGGTTTGGATGTATCGACTGAGATCCAGACTTCGAAGCGTTGAGCAATTGCCTCAACCACAGGAATAACACGTTGCAACTCTTCTTCAACg  <  1:199286/275‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                               GCCAGACTACCGCTCAGGCGCTCGGACGGCCCCACGTTCAGCAGCTGCCCAATCATCGATTTTCGTGACATACCCACCAACAGCGGCAGGTTGAAATGGTGAAATTCAGCCAGGCGCGCCAGTAATGAATAGTTATGGGAGAGATTTTTACCGAAACCGAATCCGGGGTCGAGCAACAATTTCTCTTTTGCGATACCCGCCTGCTCGCAACGTGCTATTTGCTCAATAAAGTAGCGATTCACTTCTGCAAAGACATCGTCATACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATGACTTCTGGTTTGGATGTATCGACTGAGATCCAGACTTCGAAGCGTTGAGCAATTGCCTCAACCACAGGAATAACACGTTGCAACTCTTCTTCAACG  >  CP009273/3317549‑3318061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.