New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3376205 =	21 (0.550)	4 (0.110)	4/298	NT	12.1%	coding (647/1068 nt)	degS	serine endoprotease, periplasmic
	?	CP009273	3376739 =	38 (1.040)					coding (889/939 nt)	mdh	malate dehydrogenase, NAD(P)‑binding

ACCGATCTGGCGGTACTTAAAATTAATGCCACTGGCGGTTTACCTACCATTCCAATTAATGCACGTCGCGTACCGCACATTGGCGACGTAGTACTGGCGATCGGTAACCCGTACAACCTCGGGCAGACCATTACCCAGGGGATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTC  >  CP009273/3375931‑3376458                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                              atgcagaacncggggactgaagtggttgaagcggaggccgttggcgggtctgcaaccctgtctatgggccaggcagctgcacgttttggtctgtctctggttcgtgcactgcagggcgaacaaggcgttgtcgaatgtgcctacgttgaaggcgacggtcagtacgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctgga                                                                                                                                                                                                                                                               >  2:274956‑M1/275‑275 (MQ=255)     aTCTGGCGGTATTTAAAATTAATGACACGGGCGTTTTACCTACCAGTCCAATTAATGCACGTCGCGTACCGCACATTGGCGACGTAGTAATGGCGATCAGTAACCCGTACAACCTCGGGCAGACCATTACCCAGGGGATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACg                                                                                                                                                                                                                                                           <  1:308215/275‑1 (MQ=255)        agacgctccTTAAAAGTAACTCCCCTGGCGGTTCACCTACCATTCCAATTAATGCACGCCGCGTCCCGCACATTGTCTACGTAGTAATGGCGATCAGTAACCCGAACCACCTCGGGCAGACCATTACCCAGGGGATTATTAGTGCCACGGGTCGCATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCt                                                                                                                                                                                                                                                         <  2:83281/266‑1 (MQ=255)                                           ggcgggtctgcaaccctgtctatgggccaggcagctgcacgttttggtctgtctctggttcgtgcactgtagggcgaacaaggcgttgtcgaatgtgcctacgttgaaggcgacggtcagtacgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggATACGCTg                                                                                                                                                                                                                                                        >  1:435182‑M1/233‑240 (MQ=255)                                                                                                                        acaaggcgttgtcgaatgtgcctacgttgaaggcgacggtcagtacgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCa                                                                                                                                                                               <  2:336617‑M1/81‑1 (MQ=255)                                                                                                                            ggcgttgtcgaatgtgcctacgttgaaggcgacggtcagtacgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAAt                                                                                                                                                                           >  1:336623‑M1/152‑236 (MQ=255)                                                                                                                                 cATTACCCAGGGGATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTa                                                                                                                                                                                                                                        >  2:36583/1‑170 (MQ=255)                                                                                                                                     aCCCAGGGGATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGa                                                                                                                                                                                                                                    <  1:36583/170‑1 (MQ=255)                                                                                                                                          ggggATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCGGGGCGAACGGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGc                                                                                                                                                                                                                         >  2:631258/1‑176 (MQ=255)                                                                                                                                           gggATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATcg                                                                                                                      >  1:415975/1‑274 (MQ=255)                                                                                                                                            cctacgttgaaggcgacggtcagtacgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgtgctggaaggtatgctggAt                                                                                                                                                                                                                                                              >  1:583141‑M1/136‑137 (MQ=255)                                                                                                                                              attattAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGa                                                                                                                                                                                                                     <  1:631267/176‑1 (MQ=255)                                                                                                                                                tattaGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAAtt                                                                                                                                                                          >  1:642642/1‑217 (MQ=255)                                                                                                                                                    aGTGCCACCGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATgg                                                                                                                                                                      <  2:642633/217‑1 (MQ=255)                                                                                                                                                                    acgcccgtttcttctctcaaccgctgctgctgggtaaaaacggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCAc                                                                                            <  1:322133‑M1/164‑1 (MQ=255)                                                                                                                                                                       gTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTAACGGCGGACGGGAGATGGCACCACTGCCcgcg                                                                                         >  2:656197/1‑275 (MQ=255)                                                                                                                                                                                           gtagaagggaacaaaaCCGAGGCTTCCGTGAACCACGGTAACTGGGGGGGCGCGGTGGTGAACTCGCTGGGCGAAGTGATGGGCATTAATAAGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATc                                                                      <  2:651223/261‑1 (MQ=255)                                                                                                                                                                                                              aTGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCcg                                                                                                                                       >  1:40518/1‑190 (MQ=255)                                                                                                                                                                                                                  ttCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCAGc                                                                                                                                   <  2:40518/190‑1 (MQ=255)                                                                                                                                                                                                                   tCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAATCTTATGGATAANCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGtata                                                                          >  1:651232/1‑246 (MQ=255)                                                                                                                                                                                                                   tCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGa                                             >  1:170370/1‑275 (MQ=255)                                                                                                                                                                                                                     agagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGa                                             >  2:322127‑M1/63‑273 (MQ=255)                                                                                                                                                                                                                               ggTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGttt                                                                                                                                                                                                                                                  >  1:585532/1‑66 (MQ=255)                                                                                                                                                                                                                                   aCTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATa                                                                                                                                                                                                                                              <  2:585523/66‑1 (MQ=255)                                                                                                                                                                                                                                         gcggcgCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGt                                                                                                                                                                                        >  1:306899/1‑114 (MQ=255)                                                                                                                                                                                                                                             cgcgcTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGc                                                                                                                                                                                    <  2:306893/114‑1 (MQ=255)                                                                                                                                                                                                                                             cgcgcTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAACATTATGGATAAGCTGATCCGCGATTGTCGCGTGATCCGCCGATATATAGGTATCGGCGGCCGTGAGATCGCACCACTGCACGCAGCGGACGGGGGTATAGATCAACTGCAAGGGATCGGGGGTAATGTAGTGTGACCTGACGGcggcgcgnnng                   >  2:203556/1‑265 (MQ=255)                                                                                                                                                                                                                                                              tGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAGTGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTc  >  1:322264/1‑275 (MQ=255)                                                                                                                                                                                                                                                                           gggCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGaa                                                                                                                                                                                                                    >  2:241987/1‑52 (MQ=255)                                                                                                                                                                                                                                                                               aTTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTa                                                                                                                                                                                                                <  1:241992/52‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                              ACCGATCTGGCGGTACTTAAAATTAATGCCACTGGCGGTTTACCTACCATTCCAATTAATGCACGTCGCGTACCGCACATTGGCGACGTAGTACTGGCGATCGGTAACCCGTACAACCTCGGGCAGACCATTACCCAGGGGATTATTAGTGCCACGGGTCGAATCGGTCTGAACCCGACCGGGCGGCAAAACTTCCTCCAAACCGATGCTTCCATTAACCACGGTAACTCTGGCGGCGCGCTGGTGAACTCGCTGGGCGAACTGATGGGCATTAATACGCTGTCGTTTGATAAGAGTAACGATGGCGAAACGCCGGAAGGTATCGGCTTTGCGATTCCTTTCCAGTTAGCAACCAAAATTATGGATAAGCTGATCCGCGATGGTCGCGTGATCCGCGGCTACATTGGTATCGGCGGACGTGAGATCGCACCACTGCACGCGCAGGGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTC  >  CP009273/3375931‑3376458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.