New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3395799	54 (1.400)	12 (0.340)	6/290	NT	22.0%	coding (893/1941 nt)	csrD	targeting factor for csrBC sRNA degradation
	?	CP009273	= 3396096	35 (0.990)					coding (596/1941 nt)	csrD	targeting factor for csrBC sRNA degradation

AGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTT  >  CP009273/3395530‑3396070                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                gatCATAGTAAAAAGAGTAGTTATNGACCCCCTGCAATCCCGCATTACGGGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAggg                                                                                                                                                                                                                                                                            <  2:422490/273‑1 (MQ=255)                cccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATaaa                                                                                                                                                                                                                                                              >  1:167535/1‑274 (MQ=255)                               ccTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCACTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAAAGTCGACAGCAGAta                                                                                                                                                                                                                                               >  1:569624/1‑273 (MQ=255)                                  gCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCACAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCCGGGTa                                                                                                                                                                                                                                                                          >  1:346071/1‑244 (MQ=255)                                   aaactccGCAGAACCCGTGGCCGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCa                                                                                                                                                                                                                                          <  2:167532/270‑1 (MQ=255)                                        ccGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGNTGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGTAGCAAAATCACTGCGGTGGTAACGCGACAGCAGTGCGCtggatacgctgcttcgtgaaattcagaaagcacgcgaacaacac                                                                                                                                                                                                                                     >  1:606634‑M1/1‑231 (MQ=255)                                        ccGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACACCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTCCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacac                                                                                                                                                                                                                                     >  1:57754‑M1/1‑231 (MQ=255)                                               aaaaggggatatgtctGCATGTTAAATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGTATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAATGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTgaagaa                                                                                                                                                                                                                                <  2:569615/260‑1 (MQ=255)                                                                 aTGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCtgt                                                                                                                                                                                                            <  1:164533/275‑1 (MQ=255)                                                                   gTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCtgtg                                                                                                                                                                                                           <  1:41992/274‑1 (MQ=255)                                                                           caatgctAGGTATGATGACCACTGCGCCAGGCGCATATACCAAGGTGGATCATATCGTCTCGATCGAGCATTGTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTACGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcgtcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccgc                                                                                                                                                                                                  <  2:606625‑M1/272‑80 (MQ=255)                                                                           aCCTGCTCGANAGCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccg                                                                                                                                                                                                   <  2:57754‑M1/274‑79 (MQ=255)                                                                                 gcgttATCCTGACCAATACGCCAGGAGGAGTTAACAATGTGGATCATATCGTCGCGATCAAGCATTTTATTGGTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCt                                                                                                                                                                                            <  1:25464/271‑1 (MQ=255)                                                                                   ggTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCa                                                                                                                                                                                          <  1:271876/275‑1 (MQ=255)                                                                                       tCCTGACCACGACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCGTCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGGTCCCCCAGGTATCGCCCCACat                                                                                                                                                                                      >  1:721418/1‑275 (MQ=255)                                                                                                    gCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAgc                                                                                                                                                                                                                                                                        >  1:420403/1‑180 (MQ=255)                                                                                                      cAGGCGCAGATACCAATGTGGATCATATCGTCGCGAACGAGCATTTTATTGTTCGGCAAGATATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGACAGGGAAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACATGGCTGTGCCCCCa                                                                                                                                                                                                     >  1:171913/1‑245 (MQ=255)                                                                                                        ggCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGcat                                                                                                                                                                                                                                                                    <  2:420396/180‑1 (MQ=255)                                                                                                                           aTCATATCGTCGCGATCGAGCATTTTATTGTTAGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTGTAACGTCCGGTGCGGCAGCAGCGCAGCCAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGGCTACAGCAGATTCGTCAGAGTGAAGAACTGTTCTACAACACGGCTGTCCCCGCACGTACCGCTCAACCTAATGAAACCAGCCAGGCGAATCATCATCACGATccc                                                                                                                                                  >  2:710538/1‑275 (MQ=255)                                                                                                                                atCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGttcttc                                                                                                                                                                                                                       >  2:143873/1‑201 (MQ=255)                                                                                                                                 tcgtcgCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTNCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTATTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACCTAGCATCAGCACGATCCCGTGGGt                                                                                                                                            <  1:500813/275‑1 (MQ=255)                                                                                                                                    tcgCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTc                                                                                                                                                                                                                                              >  2:523037/1‑174 (MQ=255)                                                                                                                                    tcgCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAAcc                                                                                                                                                                                                                   <  1:143874/201‑1 (MQ=255)                                                                                                                                     cgccATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTc                                                                                                                                                                                                                                              >  1:382782/1‑173 (MQ=255)                                                                                                                                        gATCGAGCACTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCa                                                                                                                                                                                                                                          <  1:523044/174‑1 (MQ=255)                                                                                                                                         aTCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCa                                                                                                                                                                                                                                          <  2:382776/173‑1 (MQ=255)                                                                                                                                               tctttgATTGGTCGCCAAGTTATCAAAGGCTTTGATTAAATTACCTGCGATGCGTTCTTCCTCTTTTAACGTCCGGTGCGGTCACAGCCAAGCAAAATCATTGTGGTGGTAACGCGGCAGCTGTGCACCAAGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAAATGTGCTTCAACCTGGCTGTGCCCCCAGGGATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCt                                                                                                                              <  2:621883/273‑1 (MQ=255)                                                                                                                                                           cGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATg                                                                                                                                                                                                                                                            >  1:706396/1‑137 (MQ=255)                                                                                                                                                              cAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCCAAACATATTGAAATCAGGCAGACGAAACACCATCACGAACCCGCGGGTACCAACTTTCCCCCAATCTTCCAGTaatg                                                                                                               >  2:197059/1‑273 (MQ=255)                                                                                                                                                               aaGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGa                                                                                                                                                                                                                                                        <  2:706386/137‑1 (MQ=255)                                                                                                                                                                            cTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCCGTGCGCCAGGGTAGCGAACCATAAATGTCGACAGCAGATGCGTCAGAGTGAAGAACTGTACTTCAACCTGGCTGTGCCCCCAGGTATCGCCCAACATATTGAAATCCCGCAGACGACTCATCATCACGACGCCGAGGGTACCACCTTTCGCCTGATCTTGAAGTACCGATCATAACTGATTa                                                                                                 >  2:145837/1‑275 (MQ=255)                                                                                                                                                                            cTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGAc                                                                                                                                                                     >  2:244388/1‑207 (MQ=255)                                                                                                                                                                             tttGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGcatc                                                                                                                                                                                                                                                                   >  1:440736/1‑112 (MQ=255)                                                                                                                                                                             tttGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAGTCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATATTCCAGTAACGTTTCTAACTGATTAt                                                                                                >  1:722733/1‑275 (MQ=255)                                                                                                                                                                                gATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAat                                                                                                                                                                 <  1:244393/207‑1 (MQ=255)                                                                                                                                                                                 aTTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATaa                                                                                                                                                                                                                                                               <  2:440729/112‑1 (MQ=255)                                                                                                                                                                                      gtcaCCGGCGATGCTCTCTGCCTCTTTTTACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGGAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAaga                                                                                       <  2:722723/272‑1 (MQ=255)                                                                                                                                                                                      cTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTAATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAaga                                                                                       <  1:197062/275‑1 (MQ=255)                                                                                                                                                                                      cTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTACTGATCTTCCAGTAACGTTGCTAACTGAATATCGAAAAag                                                                                        >  1:169555/1‑274 (MQ=255)                                                                                                                                                                                      cTGACCGCCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAaga                                                                                       <  1:175731/275‑1 (MQ=255)                                                                                                                                                                                          ccGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTc                                                                                    <  1:145838/274‑1 (MQ=255)                                                                                                                                                                                           cGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTTCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAAc                                                                                                                                                                                                                    >  2:303688/1‑145 (MQ=255)                                                                                                                                                                                               gATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTgg                                                                                                                                                                                                                <  1:303694/145‑1 (MQ=255)                                                                                                                                                                                                           ctctTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccgcccaggacgtgaaaaccggactcaataaccgactctttttcgataatacgttagcaacgttactggaagatcaggagaaagtaggtacccacgggatagtgatgaggcttcgtcggccgngattcaaca                                                                  >  2:263428‑M1/1‑68 (MQ=255)                                                                                                                                                                                                           ctctTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttat                                                                                                                                                                                                       >  2:719705‑M1/1‑68 (MQ=255)                                                                                                                                                                                                           ctctTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttat                                                                                                                                                                                                       >  2:65624‑M1/1‑68 (MQ=255)                                                                                                                                                                                                               tttAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgttcttatgccg                                                                                                                                                                                                   <  1:719715‑M1/142‑79 (MQ=255)                                                                                                                                                                                                               tttAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccg                                                                                                                                                                                                   <  1:65625‑M1/142‑79 (MQ=255)                                                                                                                                                                                                                        cGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGcatc                                                                                                                                                                                                                                                                   >  2:230650/1‑69 (MQ=255)                                                                                                                                                                                                                        cGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGAt                                                                                                                                                                                                                                                >  1:342865/1‑88 (MQ=255)                                                                                                                                                                                                                            gCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATaa                                                                                                                                                                                                                                                               <  1:230655/69‑1 (MQ=255)                                                                                                                                                                                                                            gCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGt                                                                                                                                                                                                                                            <  2:342859/88‑1 (MQ=255)                                                                                                                                                                                                                               gTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttat                                                                                                                                                                                                       >  1:672589‑M1/1‑48 (MQ=255)                                                                                                                                                                                                                               gTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAg                                                                                                                                                                       >  2:627731/1‑154 (MQ=255)                                                                                                                                                                                                                                   cAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccg                                                                                                                                                                                                   <  2:672580‑M1/122‑79 (MQ=255)                                                                                                                                                                                                                                   cAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGa                                                                                                                                                                   <  1:627740/154‑1 (MQ=255)                                                                                                                                                                                                                                     gcgcAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAAt                                                                                                                                                                              >  1:358005/1‑141 (MQ=255)                                                                                                                                                                                                                                         agcaAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCgg                                                                                                                                                                          <  2:357999/141‑1 (MQ=255)                                                                                                                                                                                                                                          gcaAAATCCCTGCTGTGGTAACGCGCCAGCAGTGCGCtggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccgcccaggacgtgaaaaccggcctcaataaccgactctttttcgataatcagttagcaacgttactggaagatcaggagaaagtaggtacccacgggatcgtgatgatgattcgtctgccggatttcaatatgttgagcgatacctgggggcacagccagg                                    <  1:263433‑M1/274‑238 (MQ=255)                                                                                                                                                                                                                                                          ggtAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTc                                                                                                                                                                                                                                              >  2:191539/1‑56 (MQ=255)                                                                                                                                                                                                                                                           gtAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACg                                                                                                                                                                    >  1:393439/1‑129 (MQ=255)                                                                                                                                                                                                                                                              aCGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCa                                                                                                                                                                                                                                          <  1:191542/56‑1 (MQ=255)                                                                                                                                                                                                                                                               cgcgCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAatc                                                                                                                                                                <  2:393432/129‑1 (MQ=255)                                                                                                                                                                                                                                                                   ccAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGccccc                                                                                                                                                                                                      >  1:674778/1‑87 (MQ=255)                                                                                                                                                                                                                                                                     agcagTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTCTCCAGACGCCTTGGTTGTTtgcg        >  2:627172/1‑275 (MQ=255)                                                                                                                                                                                                                                                                     agcagTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCACCTGATCTTCCAGTAACGTTGCTCACTGATTATCGAAAAAGAGTCGGTTATTGATGCCGGTTTTCACGTCCTGGGCGGCATAATAGCg                                         >  1:389286/1‑242 (MQ=255)                                                                                                                                                                                                                                                                       cagTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGt                                                                                                                                                                                                  <  2:674769/87‑1 (MQ=255)                                                                                                                                                                                                                                                                           gcgctggatacgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatccgctcttatgccgcccaggacgtgaaaaccggcctcaataaccgactctttttcgataatcagttagc                                                                                                                                            >  2:1512‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                            cgcCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGGGTTGTTCGCGTGCGtt  >  1:454590/1‑274 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                AGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTT  >  CP009273/3395530‑3396070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.