New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3395799	54 (1.400)	12 (0.340)	6/290	NT	22.0%	coding (893/1941 nt)	csrD	targeting factor for csrBC sRNA degradation
	?	CP009273	= 3396096	35 (0.990)					coding (596/1941 nt)	csrD	targeting factor for csrBC sRNA degradation

TGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATAACAATGATAAAGCCAATCGCCCCCGTGAGCGGCGCGGTGGTCATCAACGAATGGAAATAGTTGCCCATCGGATCCTGATAAACCAGACGCAACGACATCCCC  >  CP009273/3395842‑3396347                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                            tgatgcaCTGTTCTTCACCCTGGCTCTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACTAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTggg                                                                                                                                                                                                                                          <  2:169552/268‑1 (MQ=255)           ttcatcAACCTGGCTGTGCCCCCAGTTATCGCTCAACACATTGCAATCCGGCAGACTAATCATCATCACGACCCCGCGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGGGCGATTTGAATTTCACGAAGCAGCGTATCCAGCGCTCCGCTGTTTCttcttttcccttca                                                                                                                                                                                                                                >  2:586067/1‑261 (MQ=255)             cttcAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTAGTTCTGGGCGGCCATTCATAg                                                                                                                                                                                                                             >  1:422807/1‑275 (MQ=255)                   ccTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccacagcagggattttgc                                                                                                                                                                                                                        <  1:263433‑M2/274‑38 (MQ=255)                     tGGCTGTGCCCCCAGGTATCGCGCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTCACTGCTTATCGAAAAAGAGTCGGTTCTTTAGTCCGTTTTTCACCTCCTGGGCGGCATCAGCGCGGATCAGCGGGTCACGACGGCTGTGTTATTCGGTTGCGTTCGGAAGTTCACGAATCATCCAATCCAGCACACATCTGGTTCTGGGCGGCCAGTCCTatctgtttg                                                                                                                                                                                                                      >  2:646243/1‑266 (MQ=255)                     tGGCTGGGCCACCAGGTATCGCTCAACATATTTAAATCCGGCAGACGAATAATCATCACGAGCCCGTGGGTACCTACTTTGTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGTCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACTAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGtt                                                                                                                                                                                                                       <  1:174774/273‑1 (MQ=255)                        cTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGCCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCaa                                                                                                                                                                                                                  <  1:627181/275‑1 (MQ=255)                                            aaaccaatTGAAATCCGGCAGACGCATCATCATCACGATCCCGTGGGTACCTACTTGCTCCTGATCTTCCAGTACCGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCa                                                                                                                                                                                               <  2:721408/268‑1 (MQ=255)                                                 tgttgaATCNCGGCCGACGAAGCCTCATCACTATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACGTATTATCGAAAAAGAGTCGGTTATTGAGTCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag                                                                                                                                                                                         >  2:263428‑M2/3‑207 (MQ=255)                                                  atTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAACAACGCTCACCGttc                                                                                                                                                                                         >  1:144174/1‑273 (MQ=255)                                                     gAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCGACCCGTTTacaa                                                                                                                                                                                     >  2:709814/1‑272 (MQ=255)                                                        aTCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCGGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATGGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                                                                                                                                                                                      <  1:187034/223‑1 (MQ=255)                                                                             caCGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCAAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCAcc                                                                                                                                                                                             >  1:399002/1‑243 (MQ=255)                                                                                                       ccTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACg                                                                                                                                                                                                   >  1:93698/1‑211 (MQ=255)                                                                                                        cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGAt                                                                                                                                                                                    <  1:117161/225‑1 (MQ=255)                                                                                                         tGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAAACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCCCGCTCCCCGTGTAAGATACGAGTAGACCGGGTTTCCAGCCATTCTTCCCCTGCAAGTTGCCGTTGTaa                                                                                                                                 >  2:231047/1‑275 (MQ=255)                                                                                                           aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCa                                                                                                                                                                                               <  2:93697/211‑1 (MQ=255)                                                                                                                       cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCa                                                                                                                                                                                                                                                             >  1:1512/1‑137 (MQ=255)                                                                                                                           gatAACTGATTATCGAAAAAGAGTCGTTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGaa                                                                                                               <  1:315475/273‑1 (MQ=255)                                                                                                                           gCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgc                                                                                                                                                                                                                                                         >  2:1512‑M2/1‑133 (MQ=255)                                                                                                                                   aTTATCGAAAAAGTGTCGGTTTTTGAGGCCGGTTTTCACGTCCTGGGCGGCATAATAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATaa                                                                                                       <  1:415739/275‑1 (MQ=255)                                                                                                                                      aTCGAAAAAGAGTCGGTTTTTGGGGCCGTTTTTCACGTCCTGGGCGGCATAAGTGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAgg                                                                                                                 <  1:29712/262‑1 (MQ=255)                                                                                                                                                  tCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTc                                                                                                                                                                                                                                              >  2:127518/1‑125 (MQ=255)                                                                                                                                                      ttATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTggg                                                                                                                                                                                                                                          <  1:127519/125‑1 (MQ=255)                                                                                                                                                               cctgTTTTGACGTCCTGGGCGGCATAAGAGCGGATCAGCGGATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACNAAGCAGCGNATCCAGCGCACTTCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGTGCATAACCATGATAAAGCCAATCGCCCCCGTGAg                                                                           <  1:474554/272‑1 (MQ=255)                                                                                                                                                                                 gcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGACGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccgtacgttaaaagaggcagagagcatcgccggtcagttaatcaaagccgttgataccttgccgaacaatacaatgctcgatcgagacgatatgatccaccttggtatatgcgcctggcgcagtggtcatcatacctagcattg                                                         <  2:606625‑M2/275‑197 (MQ=255)                                                                                                                                                                                  cggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagaggcagagagcatcgccggtcagttaatcaaagccgttgataccttgccgaacaataaaatgctcgatcgcgacgatatgatccacattggtatctgcgcctggcgtagtggtcaggctntcgagcaggt                                                         <  2:57754‑M2/274‑197 (MQ=255)                                                                                                                                                                                  cggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaa                                                                                                                                                                                             <  1:65625‑M2/142‑65 (MQ=255)                                                                                                                                                                                  cggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctg                                                                                                                                                                                                                 <  2:672580‑M2/122‑45 (MQ=255)                                                                                                                                                                                  cggcATAAGAACGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaa                                                                                                                                                                                             <  1:719715‑M2/142‑65 (MQ=255)                                                                                                                                                                                      aTAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag                                                                                                                                                                                         >  2:65624‑M2/1‑74 (MQ=255)                                                                                                                                                                                      aTAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag                                                                                                                                                                                         >  2:719705‑M2/1‑74 (MQ=255)                                                                                                                                                                                      aTAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctggcgcgttaccaccgcagtgattttgctgcgctgttac                                                                                                                                                                                                             >  1:672589‑M2/1‑74 (MQ=255)                                                                                                                                                                                         agagCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGGTCTGGGCGGCCATTCATAGAAGGTTCCCAACACATTGGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATAACAATGATAAAGCCAATCGCCCCCGTGAGCGGCGCGGTGGTCATCAACGa                                                      <  1:570466/270‑1 (MQ=255)                                                                                                                                                                                               gATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATgg                                                                                                                                                                                                                         >  2:240282/1‑101 (MQ=255)                                                                                                                                                                                               gATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACg                                                                                                                                                                                                   >  2:621322/1‑123 (MQ=255)                                                                                                                                                                                               gATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGAGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCTCCAGGAAGAGACTAACAATGATAAAGCCAATCGCACCCGTCAGCGGCGCGGTGGTATTCAACGACTGGAAATAg                                            >  1:592072/1‑274 (MQ=255)                                                                                                                                                                                                   aGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTcc                                                                                                                                                                                                                     <  1:240287/101‑1 (MQ=255)                                                                                                                                                                                                             gACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCa                                                                                                                   >  2:364388/1‑189 (MQ=255)                                                                                                                                                                                                                 gCTGTGTTGTTTGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGaa                                                                                                               <  1:364394/189‑1 (MQ=255)                                                                                                                                                                                                                 gCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATAACAATGATAAAGCACATCACCCCCGTGAGCGGCGCGGGGGTCAGCAACGAATGGAAATAGTTGCCCAGCGGATCCTGa                          >  2:665982/1‑274 (MQ=255)                                                                                                                                                                                                                  cTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGa                                                                                                                                                                                     >  1:633081/1‑118 (MQ=255)                                                                                                                                                                                                                  cTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGTGTTTCCAGCAATTCTTGCCCGGCAAGTTGGCGTTGTCACCAGCGTACCGCCAGCAAGAGCATAACAATTATAAATCCAAACGCCCCCGTAAGCAGCACGGTGGTCCTCAACGAACGTAAAAAATTCCCAATcaacacctgcc                         >  2:643954/1‑264 (MQ=255)                                                                                                                                                                                                                    gtgtTGTTCGCGTGCTTTCTGAATTTCACGAAGCAGCGTATCCAgcgcactgctgtcgcgttaccaccgcagtgattttgctacgctgttaccgcaccggacgttaaaagaggcagagagcancgccggtcagttaatcaaagccgttgataccttgccgaacaataaaatgctcgatcgcgacgatatgatccacattggtatctgcgcctggcgtagtggtcaggataccgagcaggtaatggaacatgcagagtctgccacgcgtaatgcgg                      >  1:606634‑M2/1‑44 (MQ=255)                                                                                                                                                                                                                    gtgtTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcggactgctggcgcgttaccaccgcagtgattttgctgcggtgttaccgcaccggacgttaaaagaggcagagagcatcgccggtcagttaatcaaagccgttgataccttgccgaacaataaaatgctcgatcgcgacgatatgatccacattggtatctgcgcctggcgtagtggtcaggataccgagcaggtaatggaacatgcagagtctgccacgcgtaatgcgg                      >  1:57754‑M2/1‑44 (MQ=255)                                                                                                                                                                                                                      gttgttCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACg                                                                                                                                                                                 <  2:633072/118‑1 (MQ=255)                                                                                                                                                                                                                          ttCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAg                                                                                                                             >  2:108004/1‑166 (MQ=255)                                                                                                                                                                                                                              cgtgcgtTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTa                                                                                                                         <  1:108005/166‑1 (MQ=255)                                                                                                                                                                                                                                       tGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCaa                                                                                                                                              >  2:717569/1‑136 (MQ=255)                                                                                                                                                                                                                                        taaTTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATAACAATGATAAAGCCAATCGCCCCCGTGAGCGGCGCGGTGGTCATCAACGAATGGAAATAGTTGCCCATCGGATCCTGATAAACCAGACGCAACGACATcccc  <  1:586076/274‑1 (MQ=255)                                                                                                                                                                                                                                           tttCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTg                                                                                                                                          <  1:717579/136‑1 (MQ=255)                                                                                                                                                                                                                                                               aGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGc                                                                                                                                                >  1:211861/1‑110 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                            TGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAATTCTTGCCCGGCAAGTTGCCGTTGTAACCAGCGTACCGCCAGGAAGAGCATAACAATGATAAAGCCAATCGCCCCCGTGAGCGGCGCGGTGGTCATCAACGAATGGAAATAGTTGCCCATCGGATCCTGATAAACCAGACGCAACGACATCCCC  >  CP009273/3395842‑3396347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.