| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3413250 = | 21 (0.550) | 13 (0.370) | 9/286 | NT | 35.1% | pseudogene (785/960 nt) | yhdW | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| ? | CP009273 | 3413579 = | 29 (0.830) | coding (87/1182 nt) | yhdX | putative amino‑acid transporter subunit | |||||
GCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAA > CP009273/3413014‑3413511 | gcgcATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACg > 1:111731/1‑239 (MQ=255) aTCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCaa < 2:111730/239‑1 (MQ=255) tACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGa > 2:21691/1‑213 (MQ=255) ggAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCt < 1:21691/213‑1 (MQ=255) caataaaaacgcgtccgtaggtgtcgccctgctggtaatcgatcaaatgctggacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGAAACGTAGATTCAAAAAGCCCGc < 1:34733‑M1/105‑1 (MQ=255) cgtcgtGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTAc > 2:498860/1‑159 (MQ=255) gtGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACCTCTGCTGGGTAAAGAAGGCGATTACGGCa < 1:498867/159‑1 (MQ=255) tGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTATTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAAATAAAAGTGGGc > 2:309182/1‑275 (MQ=255) aTGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc < 1:309188/274‑1 (MQ=255) ctggtaatcgatcaaatgctggacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGataat < 2:719279‑M1/26‑1 (MQ=255) taatcgatcaaatgctggacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTTGATAATAAAt > 1:719289‑M1/136‑165 (MQ=255) ctcGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTAc > 1:373461/1‑136 (MQ=255) aTTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCa < 2:373455/136‑1 (MQ=255) ttGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAAcgg < 1:127645/274‑1 (MQ=255) aatgctggacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCt < 1:307925‑M1/36‑1 (MQ=255) ctggacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATaa > 2:307919‑M1/122‑161 (MQ=255) gACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAActtctttttttat > 2:591043/1‑262 (MQ=255) gACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATAAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAAGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGAAAAATAATCTAAGGAATAAGAGCGGTATGCAGt > 2:127644/1‑275 (MQ=255) gacaataccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCt < 2:640481‑M1/36‑1 (MQ=255) agaccgatgccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATaa > 1:640490‑M1/115‑154 (MQ=255) taccgaagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATc < 2:710193‑M1/12‑1 (MQ=255) aagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCt < 2:427316‑M1/36‑1 (MQ=255) aagccagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGCAATTTTTGAGCGTAACGTAGGTTCAGaaagacc < 1:258609‑M1/103‑4 (MQ=255) gctgaatgctgaaGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAaataa > 2:61915/1‑234 (MQ=255) cagcgccgcgatccagaaaggcaaaacctgaagtaatgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATaa > 1:427323‑M1/105‑144 (MQ=255) cagcgcagcgatccagaaaggcaacacctgaagtaatgccacgattagtgagattcgttacagtgttgtgaaataaacaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACGACTCGGAAATTTTTGAGAGTAACGTAGGTTCAGAAAGCCCGCTg > 2:258604‑M1/105‑211 (MQ=255) aatgctgaaGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc < 1:61916/234‑1 (MQ=255) aTCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTa < 2:5449/83‑1 (MQ=255) tCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCt > 1:626240/1‑94 (MQ=255) ttCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAg < 2:626231/94‑1 (MQ=255) tgccacgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACg < 1:473311‑M1/3‑1 (MQ=255) gTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGaa > 2:593726/1‑83 (MQ=255) gTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGt > 1:448898/1‑122 (MQ=255) acgattattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCaa > 2:473304‑M1/65‑71 (MQ=255) aTGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTg < 1:593735/83‑1 (MQ=255) aTGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGt < 2:448891/122‑1 (MQ=255) attattgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCt < 1:433924‑M1/36‑1 (MQ=255) ttgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATaa > 2:433917‑M1/58‑97 (MQ=255) ctgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGataat > 2:520450/1‑45 (MQ=255) atAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAAt < 1:520457/44‑1 (MQ=255) aagaagGAGATTACGGCAAGGATATGAAGATGGATAAGAAATGGGCCTATAAAATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCaa < 1:591052/274‑1 (MQ=255) | GCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAA > CP009273/3413014‑3413511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |