New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3413250 =	21 (0.550)	13 (0.370)	9/286	NT	35.1%	pseudogene (785/960 nt)	yhdW	pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
	?	CP009273	3413579 =	29 (0.830)					coding (87/1182 nt)	yhdX	putative amino‑acid transporter subunit

TTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGCATTGTGTATTGTGTTCGCTTCTGTTTTGGGCTT  >  CP009273/3413341‑3413812                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                          ttCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTAAGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGAGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTTTATGTCTCATCGCCGCTCAAACGTGAAAGGCTGCCTCTCTTTTGCAACAATTCCGGTTCCCGCCGGGTTATTTCCGTCCCATGCTGTTTTTGCGTTTGCTGGCATGGTTGGTNNGTGAtcttcg                                                                                                                                                                                                       >  2:74732/1‑270 (MQ=255)                gAAAATTAAACGGGGGCATAATAATCTCTGGAATAACTGCGGTATGCAGTATGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCTCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAAt                                                                                                                                                                                        <  1:74733/275‑1 (MQ=255)                             gggCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGNGCTCTCTTCAGCGTTATGCCTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGt                                                                                                                                                                            <  1:545218/274‑1 (MQ=255)                             gggCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACTGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTg                                                                                                                                                                           >  1:372854/1‑275 (MQ=255)                                                                      aCCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTc                                                                                                                                                                                                         >  1:25595/1‑204 (MQ=255)                                                                          cccGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCacaa                                                                                                                                                                                                     <  2:25595/204‑1 (MQ=255)                                                                           ccGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTAt                                                                                                                                                                                                            >  2:596216/1‑196 (MQ=255)                                                                               gCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTca                                                                                                                                                                                                        <  1:596225/196‑1 (MQ=255)                                                                                                     cGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTCACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGTTCGCGGCTCTGGCTTCGGTATTTTCCAGCATTTGATCGATTa                                                                                                     >  1:275687/1‑273 (MQ=255)                                                                                                         cGTCGCTATGGGGTCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCAGCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACACTACGGTTCGCGCCTTGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACcagc                                                                                                <  1:406887/274‑1 (MQ=255)                                                                                                                                    cagcgggctttctgaacctacgttactctcaaaaatttccgagtcgttacccacctgtttgatgatgttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGTTTATTTCACAACACTGTAACGAATCTCACTAATCGTGGCATTACTTCAGGTGTTGCCTTTCTGGATcgctgcgctg                                                                                                                                    >  2:258604‑M2/108‑211 (MQ=255)                                                                                                                                      tATGCTTTCCGATGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTg                                                                  <  1:236247/275‑1 (MQ=255)                                                                                                                                      gcgggctttttgaatctacgtttcgctcaaaaatttccgagtagttacccacctgtttgatgatgttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTg                                                                  <  1:34733‑M2/170‑1 (MQ=255)                                                                                                                                        tGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCAttg                                                                                                                                                                                                                        >  2:230119/1‑123 (MQ=255)                                                                                                                                        tGCTTTCCGAAGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTTTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGt                                                                                                                                                                            >  1:719404/1‑167 (MQ=255)                                                                                                                                        ggtctttctgaacctacgttacgctcaaaaattgccgagtagttacccacctgtttgatgatgttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCtt                                                                                                                                <  1:258609‑M2/108‑1 (MQ=255)                                                                                                                                            ttCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTgttgg                                                                                                                                                                                                                    <  1:230124/123‑1 (MQ=255)                                                                                                                                                       cTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTgttggttg                                                                                                                                                                                                                 >  2:45503/1‑115 (MQ=255)                                                                                                                                                           gTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTa                                                                                                                                                                                                             <  1:45503/115‑1 (MQ=255)                                                                                                                                                                aTCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGt                                                                                                                                                                            >  2:648404/1‑143 (MQ=255)                                                                                                                                                                  cgccgcTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACATCAGGt                                                                                                                                                             >  1:584452/1‑156 (MQ=255)                                                                                                                                                                    ccgcTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCa                                                                                                                                                                        <  1:648413/143‑1 (MQ=255)                                                                                                                                                                      gcTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTg                                                                                                                                                         <  2:584443/156‑1 (MQ=255)                                                                                                                                                                       ggtacaggTTATAGGTTCACTCTCTTTTTCCAACCCTACGGTTTGCGCCTGGTTATTCCAGAGCCTTGCCGTTGTTGCTATTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGCat                                 <  1:697898/268‑1 (MQ=255)                                                                                                                                                                                         aCTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGttt                                       >  1:168897/1‑251 (MQ=255)                                                                                                                                                                                             tctTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGTTCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGc                                   <  2:168894/251‑1 (MQ=255)                                                                                                                                                                                                      aaCCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACATCACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGCATTGTGTATTGTGTTCGCTTCTGTTTTGGGctt  <  1:685732/275‑1 (MQ=255)                                                                                                                                                                                                       ttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCaa                                                                                                                                                                                   >  2:433917‑M2/41‑97 (MQ=255)                                                                                                                                                                                                       ttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTg                                                                                                                                    >  1:427323‑M2/41‑144 (MQ=255)                                                                                                                                                                                                       ttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAg                                                                                                                   >  2:307919‑M2/41‑161 (MQ=255)                                                                                                                                                                                                       ttataggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCATCggtct                                                                                                                          >  1:640490‑M2/41‑152 (MQ=255)                                                                                                                                                                                                           aggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCaataat                                                                                                                                                                               <  1:433924‑M2/61‑1 (MQ=255)                                                                                                                                                                                                           aggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCtt                                                                                                                                <  2:427316‑M2/108‑1 (MQ=255)                                                                                                                                                                                                           aggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTc                                                                                                                      <  2:640481‑M2/118‑1 (MQ=255)                                                                                                                                                                                                           aggcccatttattatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCAtt                                                                                                               <  1:307925‑M2/125‑1 (MQ=255)                                                                                                                                                                                                                 atttattatcaagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTa                                                                                                     >  1:719289‑M2/31‑165 (MQ=255)                                                                                                                                                                                                                  cgcgCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTcac                                                                                                                                                                                                       >  1:34283/1‑66 (MQ=255)                                                                                                                                                                                                                  cgcgCCTGGTTATTCCAGATCCTTGCCGCTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGTATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACNGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGCATTGTGTATTGTGTTCGCTTCTGtttt        >  1:496065/1‑257 (MQ=255)                                                                                                                                                                                                                     attatccagcttcagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACcag                                                                                                 <  2:719279‑M2/139‑1 (MQ=255)                                                                                                                                                                                                                      ccTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCacaaca                                                                                                                                                                                                   <  2:34283/66‑1 (MQ=255)                                                                                                                                                                                                                      ccTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGttt                                       <  1:166768/222‑1 (MQ=255)                                                                                                                                                                                                                          gTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTgttggttg                                                                                                                                                                                                                 >  2:295248/1‑48 (MQ=255)                                                                                                                                                                                                                              ttCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTa                                                                                                                                                                                                             <  1:295254/48‑1 (MQ=255)                                                                                                                                                                                                                               tCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTc                                                                                                                               >  1:710203/1‑125 (MQ=255)                                                                                                                                                                                                                                   gatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTa                                                                                                                           <  2:710193‑M2/113‑1 (MQ=255)                                                                                                                                                                                                                                        ttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGt                                                                                                                                                                            >  2:473304‑M2/8‑71 (MQ=255)                                                                                                                                                                                                                                            cgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCa                                                                                                                                                                        <  1:473311‑M2/68‑1 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                          TTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGCCTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCAATAATCGTGGCATTACTTCAGGTTTTGCCTTTCTGGATCGCGGCGCTGGCTTCGGTATTGTCCAGCATTTGATCGATTACCAGCAGGGCGACACCTACGGACGCGTTTTTATTGTCGGCTTACTCAATACGCTACTGGTTTCTGCATTGTGTATTGTGTTCGCTTCTGTTTTGGGCTT  >  CP009273/3413341‑3413812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.