New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3431091 =	33 (0.860)	4 (0.110)	4/298	NT	10.6%	coding (1215/1377 nt)	trkA	NAD‑binding component of TrK potassium transporter
	?	CP009273	3431325 =	36 (0.990)					intergenic (+72/‑58)	trkA/mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance

TGGGTGCGAAAAAGGTGATGGTATTGATCCAGCGTCGCGCTTATGTGGATCTGGTTCAGGGGAGCGTTATCGATATTGCGATTTCACCACAACAAGCAACTATTTCTGCGTTGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGAT  >  CP009273/3430838‑3431304                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                      ctgcgcatcgcgtagcgtgacagcaaactgtttaaaatcgatcccgccaattaataagcccagaggaggcatgatgatatcggcaaccagtgaagagacaatcttcccgaatgccgcaccgataatgacacccaccgccaaatccaccacgttcccgcgcatcgcaaattcgcgaaattctttaataatgctcatgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGcc                                                                                                                                                                                                                     <  1:70890‑M1/3‑1 (MQ=255)     gcatcgcgtagcgtgacagcaaactgtttaaaatcgatcccgccaattaataagcccagaggaggcatgatgatatcggcaaccagtgaagagacaatcttcccgaatgccgcaccgataatgacacccaccgccaaatccaccacgttcccgcgcatcgcaaattcgcgaaattctttaataatgctcatgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGa                                                                                                                                                                                                                 >  2:70889‑M1/250‑256 (MQ=255)                     tctttttccangcgcCGCGCTTATGTGGAGCTGGTTCAGGGGAGCGTTATCGATATTGCGATTTCACCACAACAAGCAACTATTTCTGCGTTGCTTAGCCATGTGCTAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAacgacg                                                                                                                                                                               <  2:57493/263‑1 (MQ=255)                                                                 ctttATCGATATTGCGATTTCACCACAACAAGCAACTATTTCTGCGTTGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCANTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACg                                                                                                                                  <  1:554305/273‑1 (MQ=255)                                                                           atTGCGATTTCACCATAACAAGCACCTAGTTCTGCGTTGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCANGAACGattatt                                                                                                                                                                                                        >  1:496069/1‑195 (MQ=255)                                                                               cGATTTCACCACAACAAGCAACTATTTCTGCGTTGCTTAGCCATGTTCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAg                                                                                                                                                                                                    <  2:496062/195‑1 (MQ=255)                                                                                                    cTATTTCTTGGTTGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTGAGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTAcc                                                                                               <  1:579532/275‑1 (MQ=255)                                                                                                               ttGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGtg                                                                                                                                                                             >  1:166503/1‑186 (MQ=255)                                                                                                                   ttAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGtgatga                                                                                                                                                                         <  2:166500/186‑1 (MQ=255)                                                                                                                            tgCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATc                                                                                                                                     >  2:123642/1‑213 (MQ=255)                                                                                                                            tgCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATc                                                                                                                                     <  1:123643/213‑1 (MQ=255)                                                                                                                                aaaaGCAGATATTGTTGGTNTTTCCTCANTGCGCCGCGGCGAAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCGAATGACATTCTGCGCATTGAGCAAGGCGATCACg                                                                                                                                  <  1:468208/212‑1 (MQ=255)                                                                                                                                aaaaGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAAtt                                                                                                                             <  1:6510/217‑1 (MQ=255)                                                                                                                                          ccaaatccaccacgttcccgcgcatcgcaaattcgcgaaattctttaataatgctcatgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGaa                                                                                                                                                                                                                <  2:224071‑M1/8‑1 (MQ=255)                                                                                                                                                  tgtCTCCTCATAGCGCCGCGGCGTAGCATAAGCTATTGAAGCCGTTGCTCACGGTGGTGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCACGAACGattatt                                                                                                                                                                                                        >  2:492404/1‑124 (MQ=255)                                                                                                                                                      tCCGCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAACAAAGGCACCGCCACGAACGATTATTGGAg                                                                                                                                                                                                    <  1:492411/124‑1 (MQ=255)                                                                                                                                                                 ccgcGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAATGATTATTGGAGCg                                                                                                                                                                                                  >  1:676516/1‑115 (MQ=255)                                                                                                                                                                     ggcgTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAATGATTATTGGAGCggtgg                                                                                                                                                                                              <  2:676507/115‑1 (MQ=255)                                                                                                                                                                               aaGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGcc                                                                   >  1:418834/1‑228 (MQ=255)                                                                                                                                                                                 gCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTg                                                                                                                                                        >  2:59224/1‑141 (MQ=255)                                                                                                                                                                                     ttGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCa                                                                                                                                                    <  1:59225/141‑1 (MQ=255)                                                                                                                                                                                             gTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGtg                                                                                                                                                                             >  1:417922/1‑108 (MQ=255)                                                                                                                                                                                             gTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGAt                                                                                                                                      >  2:434570/1‑147 (MQ=255)                                                                                                                                                                                               ctcatgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGcc                                                                                                                                                                                                                     <  1:158736‑M1/3‑1 (MQ=255)                                                                                                                                                                                               ctcatgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAacga                                                                                                                                                                                 <  2:602354‑M1/39‑1 (MQ=255)                                                                                                                                                                                                 cTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGtgatga                                                                                                                                                                         <  2:417915/108‑1 (MQ=255)                                                                                                                                                                                                 cTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACg                                                                                                                                  <  1:434577/147‑1 (MQ=255)                                                                                                                                                                                                 cTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGat  <  1:109648/275‑1 (MQ=255)                                                                                                                                                                                                  tCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGCACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCTAAAGACTCTTCCAGCCAAGCCCTAGCTTCTTGTAATTAATAAGGTGACAAATGACGCCTTATAATTTCCCtttctttaacagcaat  >  2:120320/1‑261 (MQ=255)                                                                                                                                                                                                   tgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGa                                                                                                                                                                                                                 >  2:158733‑M1/60‑66 (MQ=255)                                                                                                                                                                                                   tgttattctccctatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGtg                                                                                                                                                                             >  1:602363‑M1/60‑102 (MQ=255)                                                                                                                                                                                                      ggTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGcc                              <  1:120321/242‑1 (MQ=255)                                                                                                                                                                                                               tatgaagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTttatta                                                                                                 <  1:213365‑M1/119‑1 (MQ=255)                                                                                                                                                                                                                   aagccgacaaccataagtctaacaaatgttaagccattttcctGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGa                                                                                             >  2:213361‑M1/44‑166 (MQ=255)                                                                                                                                                                                                                         acaaccataagtctaacaaatgttaagccattttcctGCCAGGaa                                                                                                                                                                                                                <  1:271700‑M1/8‑1 (MQ=255)                                                                                                                                                                                                                              gTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGattat                                                                                                                                                                                                         >  1:81803/1‑47 (MQ=255)                                                                                                                                                                                                                              gTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCa                                                                       >  2:262347/1‑177 (MQ=255)                                                                                                                                                                                                                                  gCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGa                                                                                                                                                                                                     <  2:81802/47‑1 (MQ=255)                                                                                                                                                                                                                                  gCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGcc                                                                   <  1:262352/177‑1 (MQ=255)                                                                                                                                                                                                                                               cGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGAc                                 >  1:35411/1‑198 (MQ=255)                                                                                                                                                                                                                                                  aaTCAAGCTACCGCCAGGAACGATTATAGGAGCGGTGGTACg                                                                                                                                                                                          >  2:651450/1‑42 (MQ=255)                                                                                                                                                                                                                                                   aTCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCt                             <  2:35411/198‑1 (MQ=255)                                                                                                                                                                                                                                                      aaGCTACCGCCAGGAACGATTATAGGAGCGGTGGTACGTGGa                                                                                                                                                                                      <  1:651459/42‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                      TGGGTGCGAAAAAGGTGATGGTATTGATCCAGCGTCGCGCTTATGTGGATCTGGTTCAGGGGAGCGTTATCGATATTGCGATTTCACCACAACAAGCAACTATTTCTGCGTTGCTTAGCCATGTGCGAAAAGCAGATATTGTTGGTGTTTCCTCATTGCGCCGCGGCGTAGCAGAAGCTATTGAAGCCGTTGCTCACGGTGATGAAAGCACCTCACGCGTTGTCGGCAGAGTCATTGACGAAATCAAGCTACCGCCAGGAACGATTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGAT  >  CP009273/3430838‑3431304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.