New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3618443 =	70 (1.820)	5 (0.140)	3/296	NT	7.4%	coding (706/1137 nt)	yhhI	putative transposase
	?	CP009273	3618699 =	60 (1.660)					coding (962/1137 nt)	yhhI	putative transposase

ACGGATGAGAAATCTAATGAGATTACAGCTATCCCAGAACTTCTTAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCCACAGCGATCCGAAATCACTGGCACGTGGAGAATAAGCTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGA  >  CP009273/3618170‑3618699                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                 aCGGATGAGAAATCTAATGAGATTAAAGCTATCCCAGAAATTCTTAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:275654/275‑1 (MQ=18)     aTGAGAAATCTAATGAGATTACAGCTATCCCAGAACTTCTTAACATGCTGGATATTAAAGGAAAAATCATAACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGAGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCAAGAGCATGACAGTTACGAAATCAGTGAAAAGAGTAACGGCAGAGAAGAAATCAGTAtt                                                                                                                                                                                                                                                             >  1:313618/1‑275 (MQ=255)                      tataaaacTATCCCAGAACTTCTGAACAAGCTGAATAATAAAGGAAAAATAATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGAAACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGt                                                                                                                                                                                                                                            <  2:5854/268‑1 (MQ=255)                       ttACAGCTATACCAGAACTTCTTAACATGCTGGATATTAAATGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGAAATTGCAGAGAAGATACAAAAACAGGGAGGTGATTAGTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGt                                                                                                                                                                                                                                            <  1:70768/274‑1 (MQ=18)                                 cacAGAACTTCTTAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:90683/241‑1 (MQ=18)                                           cttAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATGCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGAttt                                                                                                                                                                                                                       >  1:386414/1‑275 (MQ=18)                                              aaCATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTNCCGCTGAAAGACTTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTAAc                                                                                                                                                                                                                    >  1:603578/1‑275 (MQ=18)                                                   gCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCTAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTAATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTAACGttta                                                                                                                                                                                                               >  1:455338/1‑274 (MQ=18)                                                   gCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTg                                                                                                                                                                                                               >  1:237296/1‑275 (MQ=33)                                                   gCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGGGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGAGATGTCCATGATGAACTTATTGATTTCACGTTTg                                                                                                                                                                                                               >  1:718549/1‑275 (MQ=18)                                                         aatgaaaGANAAAATCATCACTACGGATGCGATGGGTTGCCAGAAAGAAATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGa                                                                                                                                                                                                         <  2:260507/271‑1 (MQ=16)                                                           atAAAGGAAAAATCATAACATCTGATGCCATTGGTTGCCAGAAAGATTTTGCAGAGAATATACAAAAACCGGGAGGTGATTATTTATTCGCGGTAAAAGTAACCAAGGGGCGTCTAAATAAAGCCTTTGAGGACAAATTTCTGCTAAAAGAATTAAATACTCCATAGCATGACAGTTACGCAATCAGTGAAAAGATTCACGGCAGAGAAGACCTCCGTCTTCATCTTGTTTGCGAGGTCCCTAATGAACTTATTGATTTCACGTTTGAATgta                                                                                                                                                                                                         <  2:695724/272‑3 (MQ=11)                                                                   aaaaTCATCACAACTGATGCGATTGCTTGCCAGAAAAATATTGCAGCGAACATACTTAAACCGGGAGGTGATTATTTTTTCGAGGTAAAACGAACCCAGGGGCGGCTAAATAAAACCTTTCAGGAAAAATTTCCGCAGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGAAGAGAAGCATACCGTCTTCATATTGTTTGAGATGTACCTGATGAACATATTGCTTACACGTTTGAATGGAAAGGGCGga                                                                                                                                                                                                >  2:694790/1‑274 (MQ=11)                                                                         atcaCAACTGATGCGATGGGTTGTCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGAATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAAtt                                                                                                                                                                                         <  1:232397/275‑1 (MQ=18)                                                                                       gATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:150147/189‑1 (MQ=35)                                                                                       gATGGGTTGCCAGAAAGAGATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:445861/189‑1 (MQ=25)                                                                                        aTGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCNATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGtctc                                                                                                                                                                          >  1:605209/1‑275 (MQ=18)                                                                                        aTGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCAAGGCAGAGAAGAAATCCGTCTTCATATTGTATGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGATGAAGCAAGTATTCGGGGTAgctgt                                                                                                                                                                          >  2:102057/1‑271 (MQ=11)                                                                                               gCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCgg                                                                                                                                                                   <  2:237291/275‑1 (MQ=33)                                                                                               gCCAGAAAAATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTAGTTAGTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCgg                                                                                                                                                                   <  1:102058/275‑1 (MQ=18)                                                                                                       aaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtcttaaccctgccttgaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtcgtc                                                                                                                                                                                                                                                               <  1:333231‑M1/4‑1 (MQ=255)                                                                                                           cccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtcttaaccctgccttgaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCa                                                                                                                                                                                                                                                           >  2:333225‑M1/168‑175 (MQ=255)                                                                                                                  gaagaTACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTg                                                                                                                                                                                                                           >  1:12825/1‑200 (MQ=34)                                                                                                                   aagaTACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACaaaa                                                                                                                                               >  2:172679/1‑275 (MQ=33)                                                                                                                   aagaTACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGATAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACaaaa                                                                                                                                               >  1:686612/1‑275 (MQ=18)                                                                                                                   aagaTACAAAAACAGGGAGGTGAGTATTTATTCGCGGTAAAAGGAACGCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCNCTGATGAACTTATTGATTTCACGTTGGAATGGAAAGGGCTGAAGAAATTATGAGTGGCAGTCTCCTTTCAGTCCAAAATAGCAGAACcaaa                                                                                                                                               >  1:488702/1‑275 (MQ=255)                                                                                                                      aTACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGAttt                                                                                                                                                                                                                       <  2:12825/200‑1 (MQ=34)                                                                                                                      aTACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTAGGCGTGGCAGTCTCCTTNCTGTCCATAATAACATAACaaaaaat                                                                                                                                            >  2:461878/1‑272 (MQ=16)                                                                                                                          aaaaaCAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTNAGGAAAAANTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAATTTATGCGAGGCAGTCTCCTTTCGGTCCATAATAg                                                                                                                                                         <  1:461885/258‑1 (MQ=18)                                                                                                                              aCAGGGAGTTGATTATTTATTCGCGGGAAAAGGAACCCAGGGGCGGCTAAATAAAGCATTTGAGGAAAAATTTCCGCTGAAATAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAg                                                                                                                                    <  1:258318/275‑1 (MQ=21)                                                                                                                                        gATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGt                                                                                                                          <  1:172682/275‑1 (MQ=35)                                                                                                                                        aattagtTATTAGTGATAAAAGGAACCAAGGGCCGGCTAAATAAAGCCTTTTAGGAAAAATTTCCATTGAAATAATTAAATAATCCAGAGCATGACAGTTACGCATCTAGTGAAAAGAGTCACGGTAGAGAAGAAATCCGTCTTCAGATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTGTGATTGGAAAGGGCTGAAGAAATTATGCGTGGCTGGCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCGATAAATGACGGt                                                                                                                          <  2:605200/274‑1 (MQ=11)                                                                                                                                          ttatttatTCGCGGTAAAAGGAACCCAGGGGCGGATAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCa                                                                                                                        <  2:686603/275‑1 (MQ=25)                                                                                                                                           tatttattGGGGGTAAAAAGAAAAGTATGGCGGCTTAATTAAGCANTTGAGGAAAAATTTACGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCa                                                                                                                        <  2:455331/274‑1 (MQ=11)                                                                                                                                                tccatggctgcttttcgcatcttacgtcttaaccctgccttgaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtc                                                                                                                                                                                                                                                                  <  2:695484‑M1/1‑1 (MQ=255)                                                                                                                                                    tggctgcttttcgcatcttacgtcttaaccctgccttgaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCt                                                                                                                                                                                                                                                              >  1:695493‑M1/127‑131 (MQ=255)                                                                                                                                                    gcgGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:439579/128‑1 (MQ=38)                                                                                                                                                     cgGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACt                                                                                                                                                                                                                                >  2:227819/1‑160 (MQ=35)                                                                                                                                                       gTAAAAGGAAGCCAAGGGCGGATAAATAAAGCATTTGAGGAAAAATTTTCGCTGCAATAAGTAAATAATCCAGAGCATGACAGTTACGCAATAAGTGAAAAGAGTTACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAg                                                                                                           <  2:313612/275‑1 (MQ=11)                                                                                                                                                         aaaaGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTAtt                                                                                                                                                                                                                            <  1:227824/160‑1 (MQ=35)                                                                                                                                                                aCCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCtt                                                                                                                                                                                                                                                             >  2:581905/1‑120 (MQ=38)                                                                                                                                                                aCCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGtctc                                                                                                                                                                          >  1:341668/1‑203 (MQ=33)                                                                                                                                                                    aGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCata                                                                                                                                                                                                                                                         <  1:581914/120‑1 (MQ=35)                                                                                                                                                                      gggCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  2:7643/110‑1 (MQ=35)                                                                                                                                                                      gggCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCtt                                                                                                                                                                                                                                                             >  1:707246/1‑114 (MQ=35)                                                                                                                                                                         cggcTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTgaa                                                                                                                                                                                               >  1:473966/1‑173 (MQ=33)                                                                                                                                                                          ggcTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCata                                                                                                                                                                                                                                                         <  2:707236/114‑1 (MQ=35)                                                                                                                                                                           gcTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCtt                                                                                                                                                                                                                                                             >  2:3085/1‑109 (MQ=35)                                                                                                                                                                             taaataaaGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGaaa                                                                                                                                                                                           <  2:473959/173‑1 (MQ=33)                                                                                                                                                                               aataaaGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCata                                                                                                                                                                                                                                                         <  1:3085/109‑1 (MQ=32)                                                                                                                                                                                ataaaGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCtt                                                                                                                                                                       >  2:393754/1‑190 (MQ=33)                                                                                                                                                                                    aGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCgg                                                                                                                                                                   <  1:393761/190‑1 (MQ=33)                                                                                                                                                                                     ccttgaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtc                                                                                                                                                                                                                                                                  <  1:279730‑M1/1‑1 (MQ=255)                                                                                                                                                                                      ccTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGt                                                                                                                                                                                                                  >  2:152912/1‑141 (MQ=32)                                                                                                                                                                                         ttGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCa                                                                                                                                                                                                                     >  2:646599/1‑135 (MQ=32)                                                                                                                                                                                         ttGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGc                                                                                                                                                                                                   >  1:57529/1‑153 (MQ=33)                                                                                                                                                                                         ttGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTgg                                                                                                                                                                                 >  1:19887/1‑171 (MQ=33)                                                                                                                                                                                         ttGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAaaaga                                                                                                                                             >  2:143510/1‑207 (MQ=32)                                                                                                                                                                                         ttGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCcac                                                                          >  1:83277/1‑274 (MQ=37)                                                                                                                                                                                         gaataccttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCt                                                                                                                                                                                                                                                              >  2:279725‑M1/90‑94 (MQ=255)                                                                                                                                                                                          tGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGa                                                                                                                                                                                                              <  1:152915/141‑1 (MQ=32)                                                                                                                                                                                          tGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCcac                                                                          >  2:68284/1‑273 (MQ=37)                                                                                                                                                                                             ggAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGtt                                                                                                                                                                                                                 <  1:646608/135‑1 (MQ=32)                                                                                                                                                                                             ggAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTgaa                                                                                                                                                                                               <  2:57529/153‑1 (MQ=33)                                                                                                                                                                                             ggAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGt                                                                                                                                                                             <  2:19887/171‑1 (MQ=33)                                                                                                                                                                                             ggAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAaagaaaga                                                                                                                                         <  1:143511/207‑1 (MQ=32)                                                                                                                                                                                             ggAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGGTAAACAAGTCACGTCAGAGAAGAAATCCg                                                                                                                                                                                                                                                                 <  1:505948/87‑1 (MQ=11)                                                                                                                                                                                               cttatcattcgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCtt                                                                                                                                                                                                                                                             <  1:582783‑M1/6‑1 (MQ=255)                                                                                                                                                                                                        cgtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtcgt                                                                                                                                                                                                                                                                <  2:6783‑M1/3‑1 (MQ=255)                                                                                                                                                                                                         gtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGtctc                                                                                                                                                                          <  1:154519‑M1/89‑1 (MQ=255)                                                                                                                                                                                                         gtcaaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGtctc                                                                                                                                                                          <  1:21780‑M1/89‑1 (MQ=255)                                                                                                                                                                                                         gtcaaaatatgaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCatat                                                                                                                                                                                                                                                        <  1:722622‑M1/11‑1 (MQ=255)                                                                                                                                                                                                            aaaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTc                                                                                                                                                                                                                                                            >  1:6783‑M1/71‑77 (MQ=255)                                                                                                                                                                                                             aaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCATATTGtt                                                                                                                                                                                                                                                    >  2:722612‑M1/70‑84 (MQ=255)                                                                                                                                                                                                             aaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCttt                                                                                                                                                                      >  2:154516‑M1/70‑162 (MQ=255)                                                                                                                                                                                                             aaatattaatagcaatgtgccgtatccctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCttt                                                                                                                                                                      >  2:21780‑M1/70‑162 (MQ=255)                                                                                                                                                                                                                           tCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCata                                                                                                                                                                                                                                                         >  1:288858/1‑65 (MQ=35)                                                                                                                                                                                                                           tCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTc                                                                                                                                                                     >  2:395979/1‑149 (MQ=34)                                                                                                                                                                                                                               gagCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGt                                                                                                                                                                                                                                                     <  2:288853/65‑1 (MQ=35)                                                                                                                                                                                                                               gagCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTc                                                                                                                                                                 <  1:395986/149‑1 (MQ=33)                                                                                                                                                                                                                                agCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGttt                                                                                                                                                                                                                                                   >  2:683379/1‑66 (MQ=35)                                                                                                                                                                                                                                agCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCCACAGCGATCCGAAATCACTGGCACGTGGAGAATAAGCTGCa                                   <  1:68285/274‑1 (MQ=39)                                                                                                                                                                                                                                    tGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGa                                                                                                                                                                                                                                               <  1:683388/66‑1 (MQ=35)                                                                                                                                                                                                                                    atccctgaaaataattctgctgcatttcctcttcttattttgcagtcg                                                                                                                                                                                                                                                                 <  2:624867‑M1/2‑1 (MQ=255)                                                                                                                                                                                                                                     gACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGc                                                                                                                                                                                     >  2:274012/1‑123 (MQ=32)                                                                                                                                                                                                                                        ctgaaaataattctgctgcatttcctcttcttattttgcagtCGTCtt                                                                                                                                                                                                                                                             >  1:624876‑M1/43‑48 (MQ=255)                                                                                                                                                                                                                                        atgaaaataattctgctgcatttcctcttcttattttgcagtcgt                                                                                                                                                                                                                                                                <  2:1602‑M1/3‑1 (MQ=255)                                                                                                                                                                                                                                         gTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTAt                                                                                                                                                                                       <  2:655489/117‑1 (MQ=32)                                                                                                                                                                                                                                         gTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTgg                                                                                                                                                                                 <  1:274017/123‑1 (MQ=32)                                                                                                                                                                                                                                            aaataattctgctgcatttcctcttcttattttgcagtCGTCTTc                                                                                                                                                                                                                                                            >  1:1602‑M1/39‑45 (MQ=255)                                                                                                                                                                                                                                            aCGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGaa                                                                                                                                                                                                             >  2:90248/1‑92 (MQ=33)                                                                                                                                                                                                                                              gCAATCAGTGAAAAGAGTCACGGCAGAGAAGCAATCCg                                                                                                                                                                                                                                                                 <  2:429734/38‑1 (MQ=255)                                                                                                                                                                                                                                               cAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCAACAGCGATCCGAAATCACTGGCATGTGGAGAATAAGCGGCACTgtntgctggagga                    >  2:56465/1‑262 (MQ=255)                                                                                                                                                                                                                                                aaTCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGa                                                                                                                                                                                                         <  1:90249/92‑1 (MQ=33)                                                                                                                                                                                                                                                  tCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAg                                                                                                                       >  2:10843/1‑172 (MQ=34)                                                                                                                                                                                                                                                      tGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGatat                                                                                                                   <  1:10843/172‑1 (MQ=33)                                                                                                                                                                                                                                                                cACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCCACAGCGATCCGAAATCACTGGCACGTGGAGAATAAGCTGCACTGGCGTCTGGACGTGGTAATGAATGAAgacga  >  2:158138/1‑275 (MQ=38)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                 ACGGATGAGAAATCTAATGAGATTACAGCTATCCCAGAACTTCTTAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAACCCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGACAGTTACGCAATCAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGGCTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCCATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCTGAGAAATTCGCCACAGCGATCCGAAATCACTGGCACGTGGAGAATAAGCTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGA  >  CP009273/3618170‑3618699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.