New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3629398	79 (2.060)	6 (0.160)	6/302	NT	9.3%	intergenic (+145/+170)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase
	?	CP009273	= 3629559	41 (1.110)					intergenic (+306/+9)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase

GCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCAGCCAGCCGGTGACGTCCATCA  >  CP009273/3629137‑3629668                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                               gtgcATACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATTCTTTAAGTTGTTCTCAATCGTTTCAATATNAGAAGCGGGTTCTGCTAACAAATAATTGCAACGTACCGGATAAAACCAGCGTTAACCATTTGCGTAACTCTGGTTTTTCTTAGGCATCATGAAAAAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCTACCTGTTCATAGTTCATAAAGCTCTGGc                                                                                                                                                                                                                                                                   <  1:515849/273‑1 (MQ=255)                             cTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGCACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtcc                                                                                                                                                                                                                                       <  1:376432/275‑1 (MQ=255)                                tgtgAGTTCTGGTCGGTGTGGGAGCGGTATTCTTTACGTTGTTCTAAATCGTTTCAAGAGTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  2:213573/271‑1 (MQ=255)                                ggtgAGTTGTTGTGGGTTTGGTATGCGTATGCTTTACGTTGTTCTCATTCGTTTTAATATTAGAAGCGGGTTCTGCTAAAAAAGAATTGTCACGTACCTGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATAATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAATTTACTGTTTTTTTAAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  2:506249/271‑1 (MQ=255)                                    aGTTCTGGTCGGTTTGGGAGCTGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCAcc                                                                                                                                                                                                                                <  1:203958/275‑1 (MQ=255)                                      ttttGGTCGGTTTGGGTGCGGTATTTTTTACGTTGTTCTCCATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCt                                                                                                                                                                                                                               <  2:623737/271‑1 (MQ=255)                                                                  tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCAc                                                                                                                                                                                                  >  1:43733/1‑275 (MQ=255)                                                                         ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTTGCCACTGAGTGAGATTTCAATCACTTTTCCATCCAACTACAATTAAGCATGGAGGGTTTNGATTAACGTGCtgg                                                                                                                                                                                           >  2:521901/1‑273 (MQ=255)                                                                                                  agggTTCTGCTAAAAAATAATTGCAACGTACCGTATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGAATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAACAACAGCAAAGTTACTGTTTCTTTCAACCTGTTCATATTGCATAAAGATCTGGCCACTGCGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAg                                                                                                                                                                                                                      <  2:581815/222‑1 (MQ=255)                                                                                                                 aataatTGCAACGTACCGGATAAAACCAGCGTTTACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCNTAGTGGTTAAGTATAAAATACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGACTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCt                                                                                                                                                   <  1:521908/275‑1 (MQ=255)                                                                                                                               atttgATAAAAACAGCGTTTACCATTTGCGTAACTCTGGTTTTTCTTATGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGa                                                                                                                                     <  2:190162/271‑1 (MQ=255)                                                                                                                                ccGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATACTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACTTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAGTAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGAc                                                                                                                                    <  1:686576/275‑1 (MQ=255)                                                                                                                                        aaCCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCATGGGCTCATTAGAAAATAATCACAAAATAACAACAATCAAAATTAGCTCATTTTTAATGCGAATAtaataa                                                                                                                            >  2:686567/1‑275 (MQ=255)                                                                                                                                             gCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCa                                                                                                                                                                                                                                                                               >  2:181533/1‑123 (MQ=255)                                                                                                                                             gCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTAATTTTTAAt                                                                                                                                         >  1:190165/1‑257 (MQ=255)                                                                                                                                                 tGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATaaa                                                                                                                                                                                                                                                                           <  1:181536/123‑1 (MQ=255)                                                                                                                                                          ggtcaacgctGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGACAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTATAATAATTTTCATCTTTAGaaaat                                                                                                          <  1:338335‑M2/271‑6 (MQ=255)                                                                                                                                                             tAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt                                                                                                                                                                                                                                         >  2:24662/1‑145 (MQ=255)                                                                                                                                                               aCGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCCGTTCACGNGCTCATTAGAAAATACTCACAAGATAAACACTATCAAAATTAACTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAg                                                                                                        >  1:565824/1‑272 (MQ=255)                                                                                                                                                                 gCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  1:24662/145‑1 (MQ=255)                                                                                                                                                                     gTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtc                                                                                                                                                                                                                                        >  1:722766/1‑138 (MQ=255)                                                                                                                                                                         ttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccatc                                                                                                                                                                                                                                    <  2:722756/138‑1 (MQ=255)                                                                                                                                                                           tttACGCATCTTGTAATAACGCAGCTTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTtg                                                                                         <  2:43733/274‑1 (MQ=255)                                                                                                                                                                                cataaatGAAATCAAGAAGTAGTACTGCATAGTGTTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAATATCTTGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTAGATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGTAAATAGGTCAGGACGACTTtgctg                                                                                      <  2:565815/268‑1 (MQ=255)                                                                                                                                                                                    catGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATc                                                                                                                                                                                                                                                                       >  1:148394/1‑92 (MQ=255)                                                                                                                                                                                    catGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGtttt                                                                                                                                                                                                                                                    >  2:64967/1‑111 (MQ=255)                                                                                                                                                                                        aaaTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGc                                                                                                                                                                                                                                                                   <  2:148393/92‑1 (MQ=255)                                                                                                                                                                                        aaaTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAAt                                                                                                                                                                                                                                                <  1:64968/111‑1 (MQ=255)                                                                                                                                                                                              cGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTta                                                                                                                                                                                                                             >  2:150730/1‑124 (MQ=255)                                                                                                                                                                                               gcagcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCCAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTgcgc                                                                      <  1:160307/274‑1 (MQ=255)                                                                                                                                                                                                cagcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccatc                                                                                                                                                                                                                                    >  2:129224/1‑115 (MQ=255)                                                                                                                                                                                                  gcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCctaaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttct                                                                                                                                                                                                      >  2:459966‑M1/1‑69 (MQ=255)                                                                                                                                                                                                  gcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATAtt                                                                                                                                                                                                                         <  1:150733/124‑1 (MQ=255)                                                                                                                                                                                                    aTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCAcc                                                                                                                                                                                                                                <  1:129225/115‑1 (MQ=255)                                                                                                                                                                                                      tAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCctaaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttctaatg                                                                                                                                                                                                  <  1:459973‑M1/143‑79 (MQ=255)                                                                                                                                                                                                             tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCCCCTTTCCATCCACCTTATATTAAGCAGGGAGGGTTTCAGTTCACGGGCTCATTGGAAACGAATCACACGATAACGACTATCCAAATTAGCTCATTTTTAATTCTACCCTAATAATTTTCATCTTTAGGAAATAGATAAGGAAAGCTTTGCTGGAATCAAATCCTGCGcaccattccccccc                                                         >  2:590265/1‑262 (MQ=255)                                                                                                                                                                                                             tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt                                                                                                                                                                                                                                         >  2:634969/1‑97 (MQ=255)                                                                                                                                                                                                             tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCa                                                                                                                                                                                                   >  1:601017/1‑135 (MQ=255)                                                                                                                                                                                                             tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaat                                                                                                                                                                                  >  1:181152/1‑152 (MQ=255)                                                                                                                                                                                                             tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATa                                                                                                                                                                      >  1:677235/1‑164 (MQ=255)                                                                                                                                                                                                                tGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccatc                                                                                                                                                                                                                                    >  2:572445/1‑99 (MQ=255)                                                                                                                                                                                                                tGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCtt                                                                                                                                                                                                                              >  1:336861/1‑105 (MQ=255)                                                                                                                                                                                                                 ggTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  1:634978/97‑1 (MQ=255)                                                                                                                                                                                                                 ggTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACggg                                                                                                                                                                                               <  2:601008/135‑1 (MQ=255)                                                                                                                                                                                                                 ggTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATc                                                                                                                                                                              <  2:181149/152‑1 (MQ=255)                                                                                                                                                                                                                 ggTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCa                                                                                                                                                                  <  2:677226/164‑1 (MQ=255)                                                                                                                                                                                                                  gTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCctaaagatgaaaattattagagtcgcattaaaaatg                                                                                                                                                                                                                                            >  2:546179‑M1/1‑53 (MQ=255)                                                                                                                                                                                                                  gTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt                                                                                                                                                                                                                                         >  2:169215/1‑92 (MQ=255)                                                                                                                                                                                                                  gTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGgaa                                                                                                            <  2:655827‑M2/217‑4 (MQ=255)                                                                                                                                                                                                                    tAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCAcc                                                                                                                                                                                                                                <  1:572454/99‑1 (MQ=255)                                                                                                                                                                                                                    tAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTatat                                                                                                                                                                                                                          <  2:336855/105‑1 (MQ=255)                                                                                                                                                                                                                     aaGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTc                                                                                                                                                                                                                                                   >  2:260065/1‑79 (MQ=255)                                                                                                                                                                                                                      aGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCctaaagatgaaaattattagagtcgcattaaaaatgagct                                                                                                                                                                                                                                        <  1:546188‑M1/89‑41 (MQ=255)                                                                                                                                                                                                                      aGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  1:169218/92‑1 (MQ=255)                                                                                                                                                                                                                      aGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAg                                                                                                        <  1:655836/217‑1 (MQ=255)                                                                                                                                                                                                                       gTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGAct                                                                                                                                   >  2:276666/1‑189 (MQ=255)                                                                                                                                                                                                                         ataAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATc                                                                                                                                                                                                                                               <  1:260070/79‑1 (MQ=255)                                                                                                                                                                                                                          taAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACt                                                                                                                                                                                                                                                               >  2:111528/1‑62 (MQ=255)                                                                                                                                                                                                                          taAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCAt                                                                                                                                                                                                                   >  1:668474/1‑106 (MQ=255)                                                                                                                                                                                                                          taAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAAt                                                                                                                                         >  1:649536/1‑180 (MQ=255)                                                                                                                                                                                                                          taAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGcc                                             >  1:214680/1‑272 (MQ=255)                                                                                                                                                                                                                          taAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGcc                                             <  2:214676/272‑1 (MQ=255)                                                                                                                                                                                                                           aaaaaaCAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCtaa                                                                                                                               <  1:276671/189‑1 (MQ=255)                                                                                                                                                                                                                              aaaCAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACtgagt                                                                                                                                                                                                                                                           <  1:111529/62‑1 (MQ=255)                                                                                                                                                                                                                              aaaCAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAg                                                                                                                                                                                                               <  2:668465/106‑1 (MQ=255)                                                                                                                                                                                                                              aaaCAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGa                                                                                                                                     <  2:649527/180‑1 (MQ=255)                                                                                                                                                                                                                                aCAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATa                                                                                                                                                                                                                                                                             <  1:696281/42‑1 (MQ=255)                                                                                                                                                                                                                                  aGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAg                                                                                                                                                                                                                      >  1:538209/1‑95 (MQ=255)                                                                                                                                                                                                                                  aGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCAc                                                                                                                                                                                                  >  2:677718/1‑115 (MQ=255)                                                                                                                                                                                                                                  aGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCa                                                                                                                                                                                           >  2:120496/1‑122 (MQ=255)                                                                                                                                                                                                                                  aGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGa                                                                                                                                                                        >  2:493369/1‑141 (MQ=255)                                                                                                                                                                                                                                  aGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATc                                                                                                                    >  1:399308/1‑193 (MQ=255)                                                                                                                                                                                                                                    cAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCaaaa                                                                                                                                                         >  1:368672/1‑154 (MQ=255)                                                                                                                                                                                                                                    cAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTa                                                                                                                                           >  1:708740/1‑168 (MQ=255)                                                                                                                                                                                                                                      aaGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATg                                                                                                                                                                                                                  <  2:538201/95‑1 (MQ=255)                                                                                                                                                                                                                                      aaGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGc                                                                                                                                                                                              <  1:677727/115‑1 (MQ=255)                                                                                                                                                                                                                                      aaGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAg                                                                                                                                                                                       <  1:120497/122‑1 (MQ=255)                                                                                                                                                                                                                                      aaGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTa                                                                                                                <  2:399301/193‑1 (MQ=255)                                                                                                                                                                                                                                      aaGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGCGCTAGTTAGAAAATAATCACAAGATAAc                                                                                                                                                                    <  1:493376/141‑1 (MQ=255)                                                                                                                                                                                                                                       aGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGaaaa                                                                                                                                                                                   >  1:216978/1‑125 (MQ=255)                                                                                                                                                                                                                                        gTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAg                                                                                                                                                     <  2:368666/154‑1 (MQ=255)                                                                                                                                                                                                                                        gTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGc                                                                                                                                       <  2:708730/168‑1 (MQ=255)                                                                                                                                                                                                                                           aCTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaatatt                                                                                                                                                                               <  2:216974/125‑3 (MQ=255)                                                                                                                                                                                                                                              gTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCGCATTTTTAATGCTACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTTCAATCAAATCCTTCGCACAAACCCACGCACTCGACCACGCCCCAATCAAGTTAAAACCCCcca                       >  1:586458/1‑274 (MQ=255)                                                                                                                                                                                                                                                   tttCAACCTGTTCATATTTCataaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttctaatgag                                                                                                                                                                                                >  1:203397‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                                                       aaCCTGTTCATATTTCataaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttctaatgagcccg                                                                                                                                                                                            <  2:203393‑M1/100‑85 (MQ=255)                                                                                                                                                                                                                                                         ccTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt                                                                                                                                                                                                                                         >  1:283408/1‑53 (MQ=255)                                                                                                                                                                                                                                                            gTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTc                                                                                                     >  2:286591/1‑182 (MQ=255)                                                                                                                                                                                                                                                             ttCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtccat                                                                                                                                                                                                                                     <  2:283403/53‑1 (MQ=255)                                                                                                                                                                                                                                                                atatTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGga                                                                                                 <  1:286596/182‑1 (MQ=255)                                                                                                                                                                                                                                                                  atTTTctaaagatgaaaattattatagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattgtctaatgagcccgtgaactgaaaccctccatgcttaatataaggtggatggaaaggtgattgaaaactcactcagtggccagatctttatgaaatatgaacaggttgaaaaaaacagtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaaaaaccagcgttgacc  <  1:338335‑M1/275‑271 (MQ=255)                                                                                                                                                                                                                                                                   tttCctaaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttctaatgagcccgtgaactgaaaccctcca                                                                                                                                                                           >  2:311246‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                    ttCctaaagatgaaaattattagagtcgcattaaaaatgagctaattttgatagtggttatcttgtgattattttctaatgagcccgtgaactgaaaccctccatgcttaatataaggtggatggaaaggtgattgaaaactcactcagtggccagatctttatgaaatatgaacaggttgaaaaaaacagtaactttgctgttttttatacttaac                                                          <  2:655827‑M1/217‑215 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                               GCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCAGCCAGCCGGTGACGTCCATCA  >  CP009273/3629137‑3629668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.