New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3949028 =	58 (1.510)	14 (0.380)	7/298	NT	24.1%	coding (338/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase
	?	CP009273	3949257 =	33 (0.900)					coding (567/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase

GCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGA  >  CP009273/3948759‑3949288                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                     gcCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCAccgccg                                                                                                                                                                                                                                                                 >  1:208540/1‑275 (MQ=255)  gaataaatccttcatcgccgcacagatcgcatcgctatcgacggtgatgaggtcgtcgagatactcctggcataaacggaaggtttcgtcaccgatgcgttttaccgctacgccttcagcaaatagccctacgagcggcagatcaaccggatgacccgcatccagcgctgctttcaggcaggcggagtcgtccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGa                                                                                                                                                                                                                                                                <  1:165151‑M1/7‑1 (MQ=255)                                atcgctttcgacggtgatgatgtcgtcgagatactcctggcataaacggaaggtttcgtcaccgatgcgttttaccgctacgccttcagcaaatagccctacgcgcggcagatcaaccggatgacccgcatccagcgctgctttcaggcaggcggagtcttccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTcgg                                                                                                                                                                                                                                  >  1:583787‑M1/239‑275 (MQ=255)                                      aaaaTGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGgcggcg                                                                                                                                                                                                                             <  1:235338/274‑1 (MQ=255)                                                      cgtcgCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACgg                                                                                                                                                                                                             >  2:166472/1‑274 (MQ=255)                                                                                gTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAATCGACGCGCTGCGCGGCTTCTGCGGCGAAGTGCGGCTCCACGGCTCGACCCTTGTNTAAGCGacacgca                                                                                                                                                                                   >  2:518820/1‑268 (MQ=255)                                                                                 tGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGTCGGCGAAGTGCTGACCCACGGCGGGAACTTTGATGCAGCNCAAGcgcac                                                                                                                                                                                 >  2:270788/1‑271 (MQ=255)                                                                                 tGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCaa                                                                                                                                                                                  <  1:240148/274‑1 (MQ=255)                                                                                 tGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGCTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCCTTCTGCCAACCGCCACCGCCGACCTCAAAGGCGACGCGGTGCGCGGCTTCGGCGGCAAAGGGCCGCCCCCCGGCCCGCACGTTGAAGCAGCGAACGCCaa                                                                                                                                                                                  >  2:718880/1‑274 (MQ=255)                                                                                 aaggtttcgtcaccgatgcgttttaccgctacgccttcagcaaatagccctacgcgcggcagatcaaccggatgacccgcatccagcgctgctttcaggcaggcggagtcttccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgccgc                                                                                                                                                                                                                                                                   <  1:426646‑M1/4‑1 (MQ=255)                                                                                     tttcgtcaccgatgcgttttaccgctacgccttcagcaaatagccctacgcgcggcagatcaaccggatgacccgcatccagcgctgctttcaggcaggcggagtcttccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCGGCCGAc                                                                                                                                                                                                                                                               >  2:426639‑M1/186‑193 (MQ=255)                                                                                          aaGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGaa                                                                                                                                                                        <  1:270793/275‑1 (MQ=255)                                                                                                           cacaGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCGCCGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCAcagcagcag                                                                                                                                                         <  1:718890/273‑1 (MQ=255)                                                                                                               acgccttcagcaaatagccctacgcgcggcagatcaaccggatgacccgcatccagcgccgctttcaggcaggcggagtcttccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGa                                                                                                                                                                                                                                                                <  2:684823‑M1/7‑1 (MQ=255)                                                                                                                   tAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGCACTTTGATGAAGCGAAAg                                                                                                                                                                                      >  1:113195/1‑236 (MQ=255)                                                                                                                   tAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCAGTGCGCGGCTTCGGCGGCGAGGTGCTGCTCCACGGCGCGAACTTtgatga                                                                                                                                                                                              >  1:374492/1‑228 (MQ=255)                                                                                                                          ggtgggccctACGCCATGTTGTCGTGCCTGACGGAAGAACAGAAAGCGCACGTCGTGCTCACTGCTTCTGCGGGTAACCACGCGAAGGGCGTCGCGCTTTCTTCTGCTCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTgc                                                                                                                                         <  1:382163/265‑1 (MQ=255)                                                                                                                                      gCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTACCCACGCGCAGGGCGTCGCGTTTTCTNCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGAcc                                                                                                                             <  1:518827/274‑1 (MQ=255)                                                                                                                                       ccATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCAt                                                                                                                           <  1:166475/275‑1 (MQ=255)                                                                                                                                         atgatgGCGGGCCTGACGGAAGAACAGAGAGCGCACGGCGTGAACACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGGGCTGNCCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGTTCGAACTGTCACAACAACAGACGCTCACCTGGCTGCCGCCCTTCCACCATcc                                                                                                                         >  1:514533/1‑275 (MQ=255)                                                                                                                                         atgatgGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGa                                                                                                                                                                                                                            >  2:656748/1‑176 (MQ=255)                                                                                                                                         atgatgGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGa                                                                                                                                                                                                                            >  2:203542/1‑176 (MQ=255)                                                                                                                                             tgGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGtg                                                                                                                                                                                                                        <  1:203546/176‑1 (MQ=255)                                                                                                                                             tgGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGtg                                                                                                                                                                                                                        <  1:656757/176‑1 (MQ=255)                                                                                                                                                      ggatgacccgcatccagcgctgctttcaggcaggcggagtcttccgcttctacggcgatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAACGTCGACGCGGTGCGCGGCTTCGGCGGCGACGTGCTGCTCCACGGCGCGACCTTTGATGACGCGACAGCCAAAGCGACCGAACTGTCACAGCAGCCGGGGTTCCCCTCGCTTCCCCCGTgcgaccacccgctttgttttt                                                                                                              <  2:342689‑M1/153‑11 (MQ=255)                                                                                                                                                                    aaaGCGCACGGCGTTATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCAcgct                                                                                              <  1:702407/275‑1 (MQ=255)                                                                                                                                                                    aaaGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATACGATGGTGATTGCAGGGCAAGGCAcgct                                                                                              >  1:251518/1‑275 (MQ=255)                                                                                                                                                                      aGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGCAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCAcgctg                                                                                             >  1:644634/1‑274 (MQ=255)                                                                                                                                                                           aCGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCAcag                                                                                                                                                               >  1:244342/1‑203 (MQ=255)                                                                                                                                                                               cGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCAcagcagc                                                                                                                                                           <  2:244337/203‑1 (MQ=255)                                                                                                                                                                                   atctgttggtCTGCGGGTAAACGCGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTNTGCCAACCNCCACCGCCGACATCAAAGTCGTCGCGGTGCGCGGCTTCGGCAGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAATCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATTGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAAc                                                                                   <  1:479474/262‑1 (MQ=255)                                                                                                                                                                                         gCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAAACGCCACCGCCGACATCAAAGTc                                                                                                                                                                                                                                                      >  2:199173/1‑102 (MQ=255)                                                                                                                                                                                             cTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGAcg                                                                                                                                                                                                                                                  <  1:199176/102‑1 (MQ=255)                                                                                                                                                                                             cTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGc                                                                                                             >  2:475940/1‑235 (MQ=255)                                                                                                                                                                                              tGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACg                                                                    >  1:258987/1‑275 (MQ=255)                                                                                                                                                                                              tGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTCCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACg                                                                    >  1:63084/1‑275 (MQ=255)                                                                                                                                                                                              tGCGGGTAACCACCCGCCGGGCGTCGCGGTTTCTTCTGCGCTGTTAGGCTTGAAGTCCCTGCTCGTTCTGCCAACCGCCACCGCCTGCATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACg                                                                    <  2:251513/275‑1 (MQ=255)                                                                                                                                                                                              tGCGGGTAACANAGCGCAGGGCGCCGCGTTGTGTTCTGCGCGGTTATGTCTGAAGGCCCTGGTCGTTATGCCAACCGCCACCGCCGAACTCAAAGTCGACGCGGTGGTCGGCGTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCCGGGGTTCACCTGGGTGCCGCCGTGCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACg                                                                    <  2:63083/275‑1 (MQ=255)                                                                                                                                                                                                ctgctccccAGGCGCCTGGCGTCGCGTTTTCTGCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGGGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGGCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACg                                                                    <  2:107127/266‑1 (MQ=255)                                                                                                                                                                                                 gggTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCggg                                                                                                         <  1:475947/235‑1 (MQ=255)                                                                                                                                                                                                    tAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGt                                                                                                                                   >  1:316409/1‑206 (MQ=255)                                                                                                                                                                                                             gcAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCcagcag                                                                        >  1:107128/1‑256 (MQ=255)                                                                                                                                                                                                              tttccctttgatttgcggcatcagttgtttgatcagcaccgccacgccagccgccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTNCACGGCGCGATCTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGt                                                    >  1:660656‑M1/65‑275 (MQ=255)                                                                                                                                                                                                              tatcatttttattttcgtcatcagttgtttgaccagccccgccacgccagcagcccgaccgccgCCGCCGACATCAAAGTCTACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGt                                                    >  1:422793‑M1/65‑275 (MQ=255)                                                                                                                                                                                                              gatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCt                                                                                                                                                                                                                                      <  1:542151‑M1/33‑1 (MQ=255)                                                                                                                                                                                                              gatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGt                                                    >  1:342695‑M1/65‑275 (MQ=255)                                                                                                                                                                                                              gatcactttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccaCCGCCGACATCAAAGTCGACGCGGTGCGCGGCt                                                                                                                                                                                                                                      <  1:585340‑M1/33‑1 (MQ=255)                                                                                                                                                                                                              cttacctttgacttgcggcagcggttgtctgcgccgcaccgcgacgccagcagccagaccgccgACGCCGACAGCAAGG‑CGACGCGGGGCGCGGCTGCGGCGGCGGAGGGCTGCTACACGGCGGGGACTTGGATGAAGCGAAAGCCAAAGCGATGGAACTGGCAGAGCAGCAGGGGTTCACGTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGt                                                    >  2:115953‑M1/65‑274 (MQ=255)                                                                                                                                                                                                                tcattttgttttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTAt                                                  >  1:321096‑M1/63‑275 (MQ=255)                                                                                                                                                                                                                  cctttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGGCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTa                                                   >  1:30562‑M1/61‑272 (MQ=255)                                                                                                                                                                                                                  actttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTcgg                                                                                                                                                                                                                                  >  2:542142‑M1/61‑97 (MQ=255)                                                                                                                                                                                                                  actttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccgCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTa                                                   >  1:254182‑M1/61‑272 (MQ=255)                                                                                                                                                                                                                  actttgatttgcggcatcagttgtttgatcagcaccgccacgccagcagccagaccgccaCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTcgg                                                                                                                                                                                                                                  >  2:585331‑M1/61‑97 (MQ=255)                                                                                                                                                                                                                      cgcgTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAGAGCGATCGAACTGTCACAGCAGCAGGGGTACACCTGGGTGCCNCCGTTCGANCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGa                                                          >  1:472206/1‑261 (MQ=255)                                                                                                                                                                                                                              ggcatcagttgttttatcagcaccgccacgccagaagccagaccgccaCCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGCTCGAACTGTCACAGCAGCAGGGGTTCACCTGGATGCCGACGTTCGNCCATCCTANGGTGATTGCCGGGCAAGGCACGCTGGCGCGGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTgccagctgt                                     <  1:477393‑M1/226‑5 (MQ=255)                                                                                                                                                                                                                                 ctGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCa                                                                                                  >  1:49197/1‑210 (MQ=255)                                                                                                                                                                                                                                     gcgGTTAGGCGTGAAGACCCTGTTCGTTATGCCAACCGCCACCGCCGGCATCAAAGGCGACGCGGTGCGCGGCTGCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCAcgct                                                                                              <  2:49197/210‑1 (MQ=255)                                                                                                                                                                                                                                                  aaGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTcggc                                                                                                                                                                                                                                 >  2:130634/1‑66 (MQ=255)                                                                                                                                                                                                                                                  aaGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGaa                                                                                                                                                                        >  2:8999/1‑123 (MQ=255)                                                                                                                                                                                                                                                   aGGGCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAg                                                                                                                                                                                      >  2:507280/1‑108 (MQ=255)                                                                                                                                                                                                                                                   aGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGaa                                                                                                                                                                        >  2:363595/1‑122 (MQ=255)                                                                                                                                                                                                                                                      cccTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGgcggcg                                                                                                                                                                                                                             <  1:130635/66‑1 (MQ=255)                                                                                                                                                                                                                                                      cccTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGt                                                                                                                                                                    <  1:8999/123‑1 (MQ=255)                                                                                                                                                                                                                                                       ccTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCg                                                                                                                                                                              >  1:368734/1‑112 (MQ=255)                                                                                                                                                                                                                                                       ccTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGt                                                                                                                                                                    <  1:363601/122‑1 (MQ=255)                                                                                                                                                                                                                                                       ccTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACCGCGCGAACTTTGATGAAGCGAAAGCCaa                                                                                                                                                                                  <  1:507287/108‑1 (MQ=255)                                                                                                                                                                                                                                                          gATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCTCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTAGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTCGAACTGCTcc                                                                             >  1:674407/1‑206 (MQ=255)                                                                                                                                                                                                                                                          gATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGtgctgc                                                                                                                                                                                                                    >  1:679340/1‑71 (MQ=255)                                                                                                                                                                                                                                                           aTCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCg                                                                                                                                                                          <  2:368728/112‑1 (MQ=255)                                                                                                                                                                                                                                                              gTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCa                                                                                                                                                                                                                <  2:679331/71‑1 (MQ=255)                                                                                                                                                                                                                                                                tATGACAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCCGCGAAGTGCTGCTACACGGCGCGAACTTTGGTGTAGCGAAAGCCAAAGCGATCGAACTGTCCCAGCAGCCGGGGTTCACATGGGTGCCGCACTTCGACAATCCGATGGTGATTGCCGCGCAAGGCACGCTGGCGCTGGAACTGCCACAGCCAGACGCCCCTCTCACCCGCGCAATTGTGCCCGTCGGCGGCGGCGGTCTGGAGGCCGGCGTGCCggcgtct   >  2:181556/1‑269 (MQ=255)                                                                                                                                                                                                                                                                agggCCAACNGCCCCCGCCGACATCAAAGGCGACGCGGTGCGCGGGGTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGa  <  2:258982/272‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGaa                                                                                                                                                                        >  2:249384/1‑108 (MQ=255)                                                                                                                                                                                                                                                                     cAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGt                                                                                                                                                                    <  1:249389/108‑1 (MQ=255)                                                                                                                                                                                                                                                                       accgccaccgccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTgc                                                                                                                                         >  2:411799/1‑133 (MQ=255)                                                                                                                                                                                                                                                                       accgccaccgccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACATTGATGAAGCGAAAGCCAACGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTgg                                                                                                                                             >  2:507581/1‑129 (MQ=255)                                                                                                                                                                                                                                                                          gccaccgccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGAcc                                                        >  1:49444/1‑211 (MQ=255)                                                                                                                                                                                                                                                                           ccaccgccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTgccgcc                                                                                                                                     <  1:411806/133‑1 (MQ=255)                                                                                                                                                                                                                                                                           ccaccgccGACATCAAAGGCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTCTCATAGCAGCAGTGGTTCACCTGGGTgc                                                                                                                                         <  1:507588/129‑1 (MQ=255)                                                                                                                                                                                                                                                                             accgccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCg                                                                                                                                                                              >  2:563250/1‑90 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                     GCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGA  >  CP009273/3948759‑3949288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.