New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3949028 =	58 (1.510)	14 (0.380)	7/298	NT	24.1%	coding (338/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase
	?	CP009273	3949257 =	33 (0.900)					coding (567/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase

TATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTC  >  CP009273/3949014‑3949524                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                            tATGACAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCCGCGAAGTGCTGCTACACGGCGCGAACTTTGGTGTAGCGAAAGCCAAAGCGATCGAACTGTCCCAGCAGCCGGGGTTCACATGGGTGCCGCACTTCGACAATCCGATGGTGATTGCCGCGCAAGGCACGCTGGCGCTGGAACTGCCACAGCCAGACGCCCCTCTCACCCGCGCAATTGTGCCCGTCGGCGGCGGCGGTCTGGAGGCCGGCGTGCCggcgtct                                                                                                                                                                                                                                               >  2:181556/1‑269 (MQ=255) agggCCAACNGCCCCCGCCGACATCAAAGGCGACGCGGTGCGCGGGGTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGa                                                                                                                                                                                                                                              <  2:258982/272‑1 (MQ=255)                  ccgCCATCACGGGCGCCGCGGTGCGCGGCTGCGGCGGCGACTTGCTGCTCCACGGCGCGAACTTTTGTGAATCGAAATCCAAAGCGATCGAACCGTCACAGCAGCAGGGGTTCACTTGGGTGCCGCCGTTCGACCTTCCGATGGTGATTGCCGGGCAACGCACGCTGGGGCTGGAACTGCTGCCGCAGGACGCGCTTCTCCACCGCGTATTTGTGCGAGTCGGCGGCGGCGGTCTGGCGGCTGGCGTTGCGGTGCTGATCAAACAACTGATGCCg                                                                                                                                                                                                                             <  2:162608/275‑1 (MQ=255)                  acagctggcacaaatacgcggtcgagatgggcgtcctgctggagcagttcccgcgccagcgtgccttgcccggcaatcaccntaggatggncgaacgtcggcatccaggtgaacccctgctgctgtgacagttcgagcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggTGGCGGTCTGGCTTCTGGCGTGGCGGTGCTGATAAAACAACTGATGcc                                                                                                                                                                                                                              <  1:477393‑M2/48‑1 (MQ=255)                               atacgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAAACAAAATGa                                                                                                                                                                                                                >  1:321096‑M2/214‑275 (MQ=255)                                tacgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgcctttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAagg                                                                                                                                                                                                                  >  1:30562‑M2/213‑271 (MQ=255)                                tacgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGt                                                                                                                                                                                                                  >  1:254182‑M2/213‑272 (MQ=255)                                 acgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATc                                                                                                                                                                                                              >  1:342695‑M2/212‑275 (MQ=255)                                 acgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtagactttgatgtcggcggCGGCGGTCGGGCTGCTGGCGTGGCGGGGCTGGTCAAACAACTGATGACGAAAATAAAAATGata                                                                                                                                                                                                              >  1:422793‑M2/212‑274 (MQ=255)                                 acgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagatcgcgccgtgnagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCGGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGggaaa                                                                                                                                                                                                              >  1:660656‑M2/212‑273 (MQ=255)                                  acgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggatggtcgaacggcggcacccacgtgaacccctgctgctctgccagttccatcgctttggctttcgcttcatccaagtccccgccgtgtagcagccctccgccgccgcagccgcgccccgcgtcgccttgctgtcggcgtCGGCGGTCTGGCTGCTGGCGTCGCGGTGCGGCGCAGACAACCGCTGCCGCAAGtcaaaggtaag                                                                                                                                                                                                              >  2:115953‑M2/211‑269 (MQ=255)                                                        gAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACCCCgc                                                                                                                                                                                       >  1:309838/1‑275 (MQ=255)                                                                         cgcgAACTTTGATGTAGCGAAAGCCAAATCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATGTGTGCCAGTCGGCGGCGGCGGTCTGGCNGCTGGCGTGGCGGTGGTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGAATCCGACAGCCTGAAAGAAgcg                                                                                                                                                                       >  1:554739/1‑274 (MQ=255)                                                                                        aGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTCTTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCCAAAAACTgctcc                                                                                                                                                                                                                               >  2:639069/1‑199 (MQ=255)                                                                                          cGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGc                                                                                                                                                               >  1:248959/1‑265 (MQ=255)                                                                                           aaaaacaaagcgggtggtcgcacgggggaagcgaggggaaccccggctgctgtgacagttcggtcgctttggctgtcgcgtcatcaaaggtcgcgccgtggagcagcacgtcgccgccgaagccgcgcaccgcgtcgacgttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATcc                                                                                                                                                      <  2:342689‑M2/120‑1 (MQ=255)                                                                                            aaaGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGATGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCgg                                                                                                                                                    <  1:399294/274‑1 (MQ=255)                                                                                            aaaGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTAGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATCCCGCa                                                                                                                                                                                                                           <  1:639078/203‑1 (MQ=255)                                                                                              aGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGt                                                                                                                                                           <  2:248954/265‑1 (MQ=255)                                                                                                               tGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTNGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGt                                                                                                                                    <  1:604140/271‑1 (MQ=255)                                                                                                                           agGGGTTCACCTGGGTGCCGCCGTTCGACCATCCCATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGTCAATCAAAGTGANCGCCGTAGNAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATATGCCGCGCGTCGGGCTATTTGCTGaa                                                                                                                    >  1:482002/1‑275 (MQ=255)                                                                                                                                        gcgccagccgTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATc                                                                                                                                                                                                              <  1:324943/166‑1 (MQ=255)                                                                                                                                               ccgTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTgg                                                                                                                                                                   >  2:266513/1‑208 (MQ=255)                                                                                                                                                   tCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGc                                                                                                                                                               <  1:266518/208‑1 (MQ=255)                                                                                                                                                          tCCGATGGTGATTGCAGGGCAAGTGACGTTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTNAAAGCAGCGCTGGATGCGGGTCATCCGGTGGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGaa                                                                                      >  1:495666/1‑274 (MQ=255)                                                                                                                                                           ccGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCCGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCACACAACTGATGCCGCAAGTCAAAGTGATCGCCGTAGAAGCGGCAGGATCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTAATCCGGTTGATCTGCCGTGCGGAGGGCTAGTTGCTCAAGGCGTCGCGGTAGAAAGCCTCgnggccgttac                                                                                    >  2:260956/1‑265 (MQ=255)                                                                                                                                                              aTGGTGATTTCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGNCGGCGGCGNTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAACGCGTAGCTGTAAAACGCATCGGTGACGAAACCtt                                                                                 <  1:471954/275‑1 (MQ=255)                                                                                                                                                                 gTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAACGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGCAGGCGTAGCGGTAAACCGCATCGGTGACGACACCGTccc                                                                              >  2:158644/1‑274 (MQ=255)                                                                                                                                                                          cggaaagcgagtgtggcgcggcAATTGCTTCCGCGGGACCCCCATCTGTCCCGCGTATTTGTGCCAGTCGGCGGCGGGGGTGTGGCTGCTGGCGTGTGGGTGCTTATCAAACAACTGATGCCGCAAATCCAAGTGATCGGCGTAGAAGCGAAAGACTCCGTCTGCCGGAAAGCAGGGCTGGGTGCGCGTCATCCCGTAGAGCTGTAGCGCGTAGGGATATTCGCTGAAGGCGTAGTAGTAAAACGCATCGGTGACGAAACCTCCCGTTTATGc                                                                       <  2:495659/260‑1 (MQ=255)                                                                                                                                                                                  cACGCTGTCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTAt                                                              <  1:260961/274‑1 (MQ=255)                                                                                                                                                                                                 aCTGCTCCAGCAGGACGCTCAGCTCGACCTCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGGAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCTGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACAtcatca                                              <  1:181559/275‑1 (MQ=255)                                                                                                                                                                                                           cgagACGCCCAGCTCGAGCGCGTATTGTGGCCAGTCGGCGGCGGCGGTGTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATa                                     <  1:266845/271‑1 (MQ=255)                                                                                                                                                                                                               ccgaagccgcgcaccgcgtcgactttgatgtcggcggTGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGt                                                                                                                                                                                                                  >  2:585331‑M2/38‑97 (MQ=255)                                                                                                                                                                                                               ccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGt                                                                                                                                                                                                                  >  2:542142‑M2/38‑97 (MQ=255)                                                                                                                                                                                                               ccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGAAAgcgat                                >  1:583787‑M2/38‑275 (MQ=255)                                                                                                                                                                                                               aCGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAg                                                                                                                                                                                                                   >  1:287426/1‑96 (MQ=255)                                                                                                                                                                                                                cGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAaacaa                                                                                                                                                                                                                                      >  1:375985/1‑76 (MQ=255)                                                                                                                                                                                                                   ccATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGAt                                                                                                                                                                                                               <  2:287421/96‑1 (MQ=255)                                                                                                                                                                                                                   agccgcgcaccgcgtcgactttgatgtcggcggTGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATc                                                                                                                                                                                                              <  1:585340‑M2/64‑1 (MQ=255)                                                                                                                                                                                                                   agccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATc                                                                                                                                                                                                              <  1:542151‑M2/64‑1 (MQ=255)                                                                                                                                                                                                                    cATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGa                                                                                                                                                                                                                                  <  2:375979/76‑1 (MQ=255)                                                                                                                                                                                                                           aCCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTgcg                    >  1:21627/1‑275 (MQ=255)                                                                                                                                                                                                                               cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAg                                                                                                                                                                                                                   >  1:104780/1‑80 (MQ=255)                                                                                                                                                                                                                               cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCgg                                                                                                                                                             >  1:185366/1‑134 (MQ=255)                                                                                                                                                                                                                                   tttGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGAt                                                                                                                                                                                                               <  2:104779/80‑1 (MQ=255)                                                                                                                                                                                                                                   tttGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCa                                                                                                                                                         <  2:185363/134‑1 (MQ=255)                                                                                                                                                                                                                                      gtgCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCg                                           >  1:14413/1‑241 (MQ=255)                                                                                                                                                                                                                                         ccAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCCGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAg                                                                                                                   >  1:684832/1‑166 (MQ=255)                                                                                                                                                                                                                                          cAGTCGGCGGCGGCGGTCTGGCTGCGGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGa                                       <  2:14413/241‑1 (MQ=255)                                                                                                                                                                                                                                            gtcggccgCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGaaa                                                                                     >  2:426639‑M2/9‑193 (MQ=255)                                                                                                                                                                                                                                             tcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGACGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCTCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACCTCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTc  <  1:165151‑M2/268‑1 (MQ=255)                                                                                                                                                                                                                                             tcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCGGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGt                                                                                                               <  2:684823‑M2/159‑1 (MQ=255)                                                                                                                                                                                                                                                gcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCtt                                                                                 <  1:426646‑M2/189‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                            TATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGATTTATTC  >  CP009273/3949014‑3949524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.