New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4344555 =	64 (1.670)	4 (0.110)	4/302	NT	9.0%	intergenic (‑21/+216)	lysU/dtpC	lysine tRNA synthetase, inducible/dipeptide and tripeptide permease
	?	CP009273	4344737 =	19 (0.510)					intergenic (‑203/+34)	lysU/dtpC	lysine tRNA synthetase, inducible/dipeptide and tripeptide permease

GAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGT  >  CP009273/4344284‑4344721                                                                                                                                                                                                                                                                                |                                                                                                                                                                       ttaaacgggatgtatatgcgggaaacgtggggggtcgccaaatgggtggaaggcggtggggaacagcagacggcagagtcgcaaattagcggtatggcaattgcagattaccagcgattcttttctcagatgggagagtggacgttggcttgtgtcgcgatcatcgtcgtattggcctttgctacccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCttt                                                                                                                                                                     >  1:169961‑M1/272‑275 (MQ=255)       ttCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGCTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTGCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGcgcgacacgt                                                                                                                                                               >  2:112259/1‑266 (MQ=255)           ccATGTTACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCCTCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGACAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCg                                                                                                                                                           <  1:689893/275‑1 (MQ=255)           aaataataattgtggTCATCCTTCGGACATCAACCGTGCCTTCAATGTTTACAGTTTCCTGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCg                                                                                                                                                           <  2:571559/262‑1 (MQ=255)                  acgacgGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATaa                                                                                                                                                    >  1:571568/1‑275 (MQ=255)                         gTCATCATTCGGCCAGCAACCGAGACCTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGTTATGTTCGCGGCGCAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCGACCAGTTTTTCNCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAgagaaa                                                                                                                                             >  1:653030/1‑273 (MQ=255)                              catTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTTCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGCCCTTTTGGTTCCTCTAAATCCCGCTTTCAAGTTATCTTAGGTAAAGATACAGATcc                                                                                                                                        >  2:28137/1‑274 (MQ=255)                                 gcGGCCACCAACCGAGCCCTAAATGTTGACGGATTCCATTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATCGTCGCGGCGAAAATCATTGGGACACTCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCAGCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTa                                                                                                                                     <  2:653021/274‑1 (MQ=255)                                    gatacccacccacaCTTTAATGTTTCAGGATTGCACTTCCGGCGTATCCTTCGCATCAATCTTGTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGAGAATCTCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCTGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACAATTTGGTTCCTCTAAGTCCAGCTTTATATGTAGCGTAGATAAAGAGACAGATCGGTaca                                                                                                                                   <  2:602867/261‑1 (MQ=255)                                    gCCAGCAAACGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTaca                                                                                                                                   <  1:112260/274‑1 (MQ=255)                                                 aCTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCATCATTGGCTCCCNGTGTTTCTNGTTCTGACATTTTGGTTCCTCTAACTCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGc                                                                                                                      >  1:469818/1‑274 (MQ=255)                                                             aaGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATc                                                                                                                                         >  2:421718/1‑243 (MQ=255)                                                                gATTCCAGTTTCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAAc                                                                                                      <  1:28137/275‑1 (MQ=255)                                                                 aTTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTa                                                                                                                                     <  1:421725/243‑1 (MQ=255)                                                                        ttCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTaca                                                                                                                                   <  1:13539/238‑1 (MQ=255)                                                                             ggTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGCTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAACTCCAGCTTTCAAttt                                                                                                                                                               >  1:52077/1‑205 (MQ=255)                                                                                 agccTTCGGATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGTGGAAAAGCATTGGGAACCGCCACCCCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCAGTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCg                                                                                                                                                           <  2:52077/203‑1 (MQ=255)                                                                                    cTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAaga                                                                                                                                                 >  2:30522/1‑212 (MQ=255)                                                                                       cGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGGCAGATCgg                                                                                                                                       >  1:578261/1‑219 (MQ=255)                                                                                        gCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACa                                                                                                                                             <  1:30522/212‑1 (MQ=255)                                                                                           tCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGGCAGATCGGTaca                                                                                                                                   <  2:578252/219‑1 (MQ=255)                                                                                                 gcaattggagttggccggcgatttttttctcgtatgggggagtgggcgttggcttgtttcgcgatcattgtcgtattggccgttgctaagcgttttcggtttagcaagccgacgaatatggtggaggagagcaacgcttaactgtcgtacaagcaattggttatgaataaattaaCTTTCAATTTAGCGTAGAGAAAGAGACAGATCGGTACACTGTATTATCTGCTTCGACTATTAGTCACTCAGTTTATCTTATCGAACCTAACGCTTACCt                                                                      >  2:506469‑M1/176‑274 (MQ=255)                                                                                                 gcaattgcagcttaccagcgattcttttctcagatgggagagtggacgttggcttgtttcgcgatcatcgtcgtattggcctttgctacccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTAGCGAAACTAACGCTTACCTc                                                                     >  1:576430‑M1/176‑275 (MQ=255)                                                                                                  ctTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCCGTTTTTCGCGGCGATTTCTCCGTTCATCGTTAAAATCAATAGCCTCCTTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGTTTACTCTAAATTCACCTTTCAATTTACCGTATATAAAGAGACAGATCgg                                                                                                                                       >  1:166008/1‑208 (MQ=255)                                                                                                    tCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTa                                                                                                                                                         >  2:392219/1‑188 (MQ=255)                                                                                                    tCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTGTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAAttt                                                                                                                                                               >  2:366724/1‑182 (MQ=255)                                                                                                        gCAACTGGTCTGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATa                                                                                                                                                     <  1:392225/188‑1 (MQ=255)                                                                                                        gCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCg                                                                                                                                                           <  1:366730/182‑1 (MQ=255)                                                                                                                        aTGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTGCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTaataaata                                               <  1:583098/274‑1 (MQ=255)                                                                                                                             ctcagatgggagagtggacgttggcttgtgtcgcgatcatcgtcgtattggcctttgctacccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTATAAACtcatt                                                                                                 <  2:670768‑M1/72‑3 (MQ=255)                                                                                                                                 gatgggagagtggacgttggcttctgtcgcgatcatcgtcgtattggcctttgctacccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTttat                                                                                             >  1:670777‑M1/144‑219 (MQ=255)                                                                                                                                                             tGCTGACGTAGTGCCGCCAGTTTTTCGCGGTGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATAGAAACt                                                                                 >  2:18253/1‑203 (MQ=255)                                                                                                                                                             tGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAaga                                                                                                                                                 >  2:480957/1‑139 (MQ=255)                                                                                                                                                             tGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATc                                                                                                                         >  1:647268/1‑163 (MQ=255)                                                                                                                                                              gCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTACCTAAATTAATATTATCGAAACAAACGCTTACCTCAAGTTGATATCACTAATAAATAACACTCAAAATTGATAAAATGACTTATAAAATTCGAtta        >  2:32767/1‑274 (MQ=255)                                                                                                                                                                 gACGTAGTGCCGCCAGTTTTTCGCGGTGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACg                                                                             <  1:18253/203‑1 (MQ=255)                                                                                                                                                                 gACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACa                                                                                                                                             <  1:480964/139‑1 (MQ=255)                                                                                                                                                                 gACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGcc                                                                                                                     <  2:647259/163‑1 (MQ=255)                                                                                                                                                                    gTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCt                                                                                                                        >  2:120619/1‑157 (MQ=255)                                                                                                                                                                    gTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAgt  >  1:164611/1‑275 (MQ=255)                                                                                                                                                                      aGTGCCGCCAGTTNTTCGCGGAGAGTTCTCAGTGCATCGTTAAAATCAATAGCCTCATTGGCTTCCCGTGTTTCTTGTTCAGACAGTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTaa                                                                                                       <  1:658262/172‑1 (MQ=255)                                                                                                                                                                       tcgtattggcctttgctacccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCttt                                                                                                                                                                     >  2:501749‑M1/106‑109 (MQ=255)                                                                                                                                                                        tGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCt                                                                                                                    <  1:120620/157‑1 (MQ=255)                                                                                                                                                                                   ttgtttatcgATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGt                                                                                                 >  1:239281/9‑165 (MQ=255)                                                                                                                                                                                       ttatcgATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTttat                                                                                             <  2:239276/161‑1 (MQ=255)                                                                                                                                                                                        acccgttttctgtttagcacgccgacgaatatgatacaggagagcaacgattaactgtcgtaaaaacaattggttatgaataaattaaCttt                                                                                                                                                                     >  1:546493‑M1/89‑92 (MQ=255)                                                                                                                                                                                                        cATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGGACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCTAAACTAACGCTTACCTCAAGTTTATATCACTAATACATAACCATCaa                                       >  2:100160/1‑202 (MQ=255)                                                                                                                                                                                                          tCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTaa                             >  2:707043/1‑210 (MQ=255)                                                                                                                                                                                                            gTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCCATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATg                                   <  1:100161/202‑1 (MQ=255)                                                                                                                                                                                                              tAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGa                         <  1:707053/210‑1 (MQ=255)                                                                                                                                                                                                                aaaTCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGata                                                            >  1:186408/1‑173 (MQ=255)                                                                                                                                                                                                                    cAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAaga                                                                                                                                                 >  1:279830/1‑84 (MQ=255)                                                                                                                                                                                                                    cAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCAc                                                        <  2:186405/173‑1 (MQ=255)                                                                                                                                                                                                                     aaTAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGc                                                                            >  1:675246/1‑152 (MQ=255)                                                                                                                                                                                                                      aTAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATaaa                                                                                                                                                   >  1:134308/1‑80 (MQ=255)                                                                                                                                                                                                                        aGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGTTTCCTCTAAAACCAGCTTTCAATTTAGCGTATATAAAGAGACa                                                                                                                                             <  2:279825/84‑1 (MQ=255)                                                                                                                                                                                                                         gCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTAc                                                                        <  2:675237/152‑1 (MQ=255)                                                                                                                                                                                                                          ccTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAgaga                                                                                                                                               <  2:134307/80‑1 (MQ=255)                                                                                                                                                                                                                            tCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGatat                                                           >  1:187381/1‑162 (MQ=255)                                                                                                                                                                                                                               ttGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATaaa                                                                                                                                                   >  1:428191/1‑71 (MQ=255)                                                                                                                                                                                                                                tGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACt                                                       <  2:187378/162‑1 (MQ=255)                                                                                                                                                                                                                                 ggCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCtt                                                                                                                                                                      <  2:541638/50‑1 (MQ=255)                                                                                                                                                                                                                                   cTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAgaga                                                                                                                                               <  2:428184/71‑1 (MQ=255)                                                                                                                                                                                                                                        cGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGcc                                                                                                                     >  2:543969/1‑92 (MQ=255)                                                                                                                                                                                                                                            tttCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACTGATCGGTACACTGTATTATCTGCCTCGa                                                                                                                 <  1:543978/92‑1 (MQ=255)                                                                                                                                                                                                                                                    tCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATaaa                                                                                                                                                   >  1:569858/1‑50 (MQ=255)                                                                                                                                                                                                                                                        aCATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAgaga                                                                                                                                               <  2:569849/50‑1 (MQ=255)                                                                                                                                                                                                                                                            tttGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCgg                                                                                                                                       >  2:525388/1‑54 (MQ=255)                                                                                                                                                                                                                                                                gTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTaca                                                                                                                                   <  1:525395/54‑1 (MQ=255)                                                                                                                                                                                                                                                                    ctctAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGatat                                                           >  1:384924/1‑122 (MQ=255)                                                                                                                                                                                                                                                                     tctAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTttatc                                                                                            >  1:85067/1‑88 (MQ=255)                                                                                                                                                                                                                                                                        aaaTCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACt                                                       <  2:384918/122‑1 (MQ=255)                                                                                                                                                                                                                                                                         aaTCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTttatcttat                                                                                        <  2:85066/88‑1 (MQ=255)                                                                                                                                                                                                                                                                              aGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCt                                                                      >  2:189362/1‑101 (MQ=255)                                                                                                                                                                                                                                                                               gCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTg                                                               >  2:386686/1‑107 (MQ=255)                                                                                                                                                                                                                                                                                CTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGata                                                            <  2:181211‑M1/109‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                       GAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGGTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCGGCGATTTCTCAGTTCATCGTTAAAATCAATAGCCTCATTGGCTCCCCGTGTTTCTTGTTCAGACATTTTGGTTCCTCTAAATCCAGCTTTCAATTTAGCGTAGATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGT  >  CP009273/4344284‑4344721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.