New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4344555 =	64 (1.670)	4 (0.110)	4/302	NT	9.0%	intergenic (‑21/+216)	lysU/dtpC	lysine tRNA synthetase, inducible/dipeptide and tripeptide permease
	?	CP009273	4344737 =	19 (0.510)					intergenic (‑203/+34)	lysU/dtpC	lysine tRNA synthetase, inducible/dipeptide and tripeptide permease

ATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCAGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAA  >  CP009273/4344572‑4345007                                                                                                                                                                      |                                                                                                                                                                                                                                                                               aTAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATtc                                                                                                                                                                                                                   >  2:628899/1‑227 (MQ=255)     agagACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCACGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATtcgtcg                                                                                                                                                                                                               <  1:628908/227‑1 (MQ=255)         aCAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGANTATcagcac                                                                                                                                                           >  2:267490/1‑270 (MQ=255)             attggTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATcg                                                                                                                                                               <  1:267495/264‑1 (MQ=255)                                              gTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAAGAACCAGCAAAATGGGTTAAATGACTTATTAATNTCGATTTGGTAGTGTTATAGACTGAAAGTTAATTGATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAAt                                                                                                                      <  1:558490/275‑1 (MQ=255)                                                       tttATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGt                                                                                                                                                                                                                                       >  1:398815/1‑153 (MQ=255)                                                           tcttatcGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGct                                                                                                                                                                                                                                   <  2:398808/153‑1 (MQ=255)                                                                  gaggtaagcgttagtttcgctaagataaactgagttactaatagtcgaggcagataatacagtgtaccgatctgtctctttatctacgctaaattgaaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGAAACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGc                                                                                                  >  1:576430‑M2/101‑275 (MQ=255)                                                                   aggtaagcgttaggttcgataagataaactgagtgactaatagtcgaagcagataatacagtgtaccgatctgtctctttctctacgctaaattgaaagTTAATTTATTCATAACCAATTGCTTGTACGACAGTTAAGCGTTGCTCTCCTCCACCATATTCGTCGGCTTGCTAAACCGAAAACGCTTAGCAACGGCCAATACGACAATGATCGCGAAACAAGCCAACGCCCACTCCCCCATACGAGAAAAAAATCGCCGGCCAACTCCAATTGc                                                                                                  >  2:506469‑M2/100‑274 (MQ=255)                                                                              tACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACAGGTAGCAAAGGCAAATACGACGATGATCGCGACACAAGCAAACGTCCACTCTCCCATCAGAGAAAAGAATCGCGGGTAAGCTGCAATTCACAAACCGATaaa                                                                                      >  1:248966/1‑274 (MQ=255)                                                                                 cTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTTTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAAtttt                                                                                   >  1:132525/1‑274 (MQ=255)                                                                                          ataaactgagttactaatagtcgaggcagataatacagtgtaccgatctgtctctttatctacgctaaattgaaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACAGAAGCCAACGTCCACTCTCCCATc                                                                                                                                  >  1:670777‑M2/77‑219 (MQ=255)                                                                                              aatgagtttataatagtcgaggcagataatacagtgtaccgatctgtctctttatctacgctaaattgaaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTgag                                                                                                                              <  2:670768‑M2/147‑1 (MQ=255)                                                                                                                      gTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGtttt                                                                                                                                                                                                                                                       >  2:622850/1‑74 (MQ=255)                                                                                                                         tAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTcc                                                                                                                                                                                                                               >  1:613322/1‑95 (MQ=255)                                                                                                                          aaaTGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACg                                                                                                                                                                                                                                                   <  1:622859/74‑1 (MQ=255)                                                                                                                             tGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTa                                                                                                                                                                                                                           <  2:613313/95‑1 (MQ=255)                                                                                                                                           cGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGttt                                                                                                                                                                                                                                                        >  1:238688/1‑52 (MQ=255)                                                                                                                                             aTTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAAtt                                                                                                    >  1:289636/1‑198 (MQ=255)                                                                                                                                              tttGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCAGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCAACGACGCCTCCCAGCCAGTGGGCGaganagccggctcc                       >  2:69771/1‑261 (MQ=255)                                                                                                                                               ttGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTAc                                                                                                                                                                                                                                                    <  2:238683/52‑1 (MQ=255)                                                                                                                                                 gTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCa                                                                                                <  2:289630/198‑1 (MQ=255)                                                                                                                                                        ttATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCACTTGCCATACCGCTAATTTACAACTCTGTCGTCTACGATGCCACCACCCCTGACCGCCAGTTTGCAACAGCGCCTGttctcctcctttaa             >  2:582511/1‑262 (MQ=255)                                                                                                                                                           taAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCAAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCAGCCATTTGGCGACCGCGCCTGTTGCCAGCATATAAATcc         >  1:353787/1‑275 (MQ=255)                                                                                                                                                                  aaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGt                                                                                                                                                                                         >  1:546493‑M2/5‑92 (MQ=255)                                                                                                                                                                  aaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATacga                                                                                                                                                                        >  2:501749‑M2/5‑109 (MQ=255)                                                                                                                                                                  aaagTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAATCTGCAATTGCCATACCGCTAATTTGCGACTCTGCCGTCTGCTGTTCCCCACCGCCTTCCACCCATTTGGCGACCCCCCACGTTTCCCGCATATACATCCCGTTTaa  >  1:169961‑M2/5‑275 (MQ=255)                                                                                                                                                                      ttAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCa                                                                                                                                                                                     <  2:546484/92‑1 (MQ=255)                                                                                                                                                                      ttAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAATGGCCAATACGACgat                                                                                                                                                                    <  1:501756/109‑1 (MQ=255)                                                                                                                                                                      |                                                                                                                                                                                                                                                                               ATAAAGAGACAGATCGGTACACTGTATTATCTGCCTCGACTATTAGTAACTCAGTTTATCTTATCGAAACTAACGCTTACCTCAAGTTGATATCACTAATAAATAACCATCAAAATGGTTTAAATGACTTATTAATCTCGATTTGTTAGTGTTATAAACTGAAAGTTAATTTATTCATAACCAATTGTTTTTACGACAGTTAATCGTTGCTCTCCTGTATCATATTCGTCGGCGTGCTAAACAGAAAACGGGTAGCAAAGGCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCAGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAA  >  CP009273/4344572‑4345007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.