New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4368615 =	58 (1.510)	6 (0.170)	5/294	NT	10.1%	coding (147/1134 nt)	ampC	penicillin‑binding protein; beta‑lactamase, intrinsically weak
	?	CP009273	4368733 =	52 (1.440)					coding (29/1134 nt)	ampC	penicillin‑binding protein; beta‑lactamase, intrinsically weak

GCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCG  >  CP009273/4368356‑4368878                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        gaaaTGGAAGGCCGCAAGCAATGTGGACTGAGTGTTGTAATATTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGTGATCTCTTAACTTGATTTCCCCGCGAGCACTAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCGAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCCGATAAATGaccgccaccgcc                                                                                                                                                                                                                                                          <  2:339067/273‑1 (MQ=255)                             tGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATCAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATaa                                                                                                                                                                                                                              >  1:302882/1‑275 (MQ=255)                                              tgATCCCATTCCACTGCTTAGCGGTAAGCTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTGTGGCGATGTCCGCATAGCNCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGa                                                                                                                                                                                                             >  1:516203/1‑275 (MQ=255)                                                aTCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCCTAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACAGCCACCGCCATACCCGGGAACATGTGTTGCTTTATAAGCGGGGTNATTTTGCCATg                                                                                                                                                                                                           >  2:60725/1‑275 (MQ=255)                                                      ttCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTGGCCACCAAGCACGCCAGTAAATGTTTTGCTGCCCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTGGGCGATGTCCGCATAGCTCAAGGTAAAGTCATCAGGTTTCCCCTGATAAATTACCGCCACCCCCATACCCGGGATCTTTTTATACCCTATTAGGTGGGTAATTCTTCGATTCACAat                                                                                                                                                                                                     >  2:317898/1‑275 (MQ=255)                                                       tCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAata                                                                                                                                                                                                    <  1:60726/275‑1 (MQ=255)                                                               ttAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAt                                                                                                                                                                                            <  1:419772/275‑1 (MQ=255)                                                                    tgcacgatctgaaaatccacgtacctgcgggcaaatgggttttctacggtctggctgctatcctgacagttgtcacgctgattggtgtcgttacaatctaacgcatcgccaatgtaaatccggccctcctatggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTaccgc                                                                                                                                                                                                                                                                 <  2:258301‑M1/9‑1 (MQ=255)                                                                        aGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTaa                                                                                                                                                                                                                     <  1:325909/241‑1 (MQ=255)                                                                        aGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTaa                                                                                                                                                                                                                     >  2:325903/1‑241 (MQ=255)                                                                                    tATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAt                                                                                                                                                                                                                    >  1:166085/1‑230 (MQ=255)                                                                                        ttgttgTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                                                                                                                                                <  2:166082/230‑1 (MQ=255)                                                                                         tgttgtGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTaccgccacc                                                                                                                                                                                                                                                             >  2:364446/1‑184 (MQ=255)                                                                                             gtgGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTAccgccaccgcca                                                                                                                                                                                                                                                         <  1:364452/184‑1 (MQ=255)                                                                                                   tCGCGTATCTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGt                                                                                                                                                        <  1:317904/275‑1 (MQ=255)                                                                                                                       cccgaaaaaggCGTNGCCACCAAGGCAGCCAGTAAATGGTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGAAGGGCTGTTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcg                                                                                                                                    <  2:516196/265‑1 (MQ=255)                                                                                                                                         acccAGCACGCCAGTAAATGTTTTGCTGATCGAACCTAACTCACACATCGTTTGCTGTGTGACTGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGt                                                                                                                  <  2:302876/275‑1 (MQ=255)                                                                                                                                          ccaAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTGGCTGTGGGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCTTCAttggtcgcgtattcc                                                                                                                  <  1:148165/274‑14 (MQ=255)                                                                                                                                                 cccccacctaTGCTTTTCTGACCGGAGCTGACTCAAGTGTCCTTTGGTGTAGTACTGGATGGTTTGTGGCGATGTCAGTATAGACCCAGGTAACGTGATTAGGTTTACCATGTTAAGTGACCGCCACCGCCATACACGGGATCTTTTGTTGCTATATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGGGGGGCGGCAAATGTGGCGCAAGGGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGttt                                                                                                           <  2:95815/265‑1 (MQ=255)                                                                                                                                                 cGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACATCGTTTGCGGTGTGACGGGCTGTTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGttt                                                                                                           <  2:663863/274‑1 (MQ=255)                                                                                                                                                               ttGCTGACCGATCCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGTTTTTTGGCGATGTCCGCATAGTCTCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAGTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGAGCAGAGCGTAGGTTTGAACATAGGGTCTGGTTTCCATACAAAACGGcc                                                                                            <  1:147988/275‑1 (MQ=255)                                                                                                                                                                tGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCttt                                                                                                                                                                                                                                           >  1:153977/1‑131 (MQ=255)                                                                                                                                                                 gCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGa                                                                                                                                                                                                             >  1:292129/1‑160 (MQ=255)                                                                                                                                                                    gACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTttgtt                                                                                                                                                                                                                                       <  2:153974/131‑1 (MQ=255)                                                                                                                                                                     aCCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGca                                                                                                                                                                                                         <  2:292123/160‑1 (MQ=255)                                                                                                                                                                          aCCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATNCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAggag                                                                                 >  1:612212/1‑273 (MQ=255)                                                                                                                                                                             tAAATCAAACAACGTTTGCGGTGTGAAGTGCTGCTTTTTGGCGATTTCCGCATAGCCCCAGGAAAAGTAATAAGGTTTACCCTGATATATTACCGCCGCCGCCATACCCGGGATCTTTTGGTGCTCTATAAGCGGGGTAATTGTGCGATGCATAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGc                                                                              <  1:371446/275‑1 (MQ=255)                                                                                                                                                                                         cGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAt                                                                                                                                                                                                                    >  2:225927/1‑129 (MQ=255)                                                                                                                                                                                         cGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg                                                                                                                                                                                                                  >  2:691070/1‑131 (MQ=255)                                                                                                                                                                                          tccggccctcctatggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGt                                                                                                                                                                                                                       <  2:50924‑M1/51‑1 (MQ=255)                                                                                                                                                                                             tgcggtttgtagggTTGCTTTGTGGGTATGTACGCATAGCCCTAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCg                                                              <  1:319609/264‑1 (MQ=255)                                                                                                                                                                                             tGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                                                                                                                                                <  1:225932/129‑1 (MQ=255)                                                                                                                                                                                             tGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCg                                                                                                                                                                                                              <  1:691079/131‑1 (MQ=255)                                                                                                                                                                                              gccctcctatggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGctc                                                                                                                                                                                                                                   <  2:107835‑M1/39‑1 (MQ=255)                                                                                                                                                                                              gccctcctatggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAtt                                                                                                                                                                                                                   >  1:50924‑M1/71‑125 (MQ=255)                                                                                                                                                                                                  tcctatggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCtata                                                                                                                                                                                                                               >  1:107836‑M1/67‑109 (MQ=255)                                                                                                                                                                                                   gtgACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATaa                                                                                                                                                                                                                              >  1:321002/1‑109 (MQ=255)                                                                                                                                                                                                       cGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCgg                                                                                                                                                                                                                          <  2:320996/109‑1 (MQ=255)                                                                                                                                                                                                         ggCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAt                                                                                                                                                                                                                    >  2:695990/1‑113 (MQ=255)                                                                                                                                                                                                            ggccgttttgtatggcaaccagaccctatgttcaaaacgacgctctgcgccttattaatt                                                                                                                                                                                                                                                                      <  1:92300‑M1/4‑1 (MQ=255)                                                                                                                                                                                                             gctTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                                                                                                                                                <  1:695999/113‑1 (MQ=255)                                                                                                                                                                                                                gttttgtatggaaaccagaccctatgttcaaaacgacgctctgcgccttattAATTaccg                                                                                                                                                                                                                                                                  >  2:92299‑M1/53‑60 (MQ=255)                                                                                                                                                                                                                           aaaccagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGt                                                                                                                                                                                                                       <  1:511981‑M1/51‑1 (MQ=255)                                                                                                                                                                                                                               cagaccctatgttcaaaacgacgctctgcgccttattAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAtt                                                                                                                                                                                                                   >  2:511974‑M1/38‑92 (MQ=255)                                                                                                                                                                                                                                    ccccAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg                                                                                                                                                                                                                  >  1:207202/1‑88 (MQ=255)                                                                                                                                                                                                                                      tatgttcaaaacgacgctctgcgccttattAATTac                                                                                                                                                                                                                                                                    <  2:254122‑M1/6‑1 (MQ=255)                                                                                                                                                                                                                                        aGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCg                                                                                                                                                                                                              <  2:207198/88‑1 (MQ=255)                                                                                                                                                                                                                                          ttcaaaacgacgctctgcgccttattAATTaccgcc                                                                                                                                                                                                                                                                >  1:254127‑M1/27‑36 (MQ=255)                                                                                                                                                                                                                                              aGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGTGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAACACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGAANTGTTAGAGTGTAAAGACAACAATCAGCTTTACAAccttcactatta             >  2:439154/1‑264 (MQ=255)                                                                                                                                                                                                                                                   taaGGTTTACCCTGATAAATTACCGCTACCGCCAGACCCGGGAGCTTTTGTTGct                                                                                                                                                                                                                                    >  1:474734/1‑55 (MQ=255)                                                                                                                                                                                                                                                   taaGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCtt                                                                                                                                                                                                                                            >  2:672139/1‑47 (MQ=255)                                                                                                                                                                                                                                                   taaGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGa                                                                                                                                                                    >  2:598962/1‑119 (MQ=255)                                                                                                                                                                                                                                                    aaGGTTTACCCGGTAAAATTACCGCCACCGCCATACCCGGGATTTTTTGTTGGTCTATAAGCGGGGTAATTGTGCGATGAACAATATCGTGGATTTGTGGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCa       <  2:612203/275‑1 (MQ=255)                                                                                                                                                                                                                                                       gTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTttgt                                                                                                                                                                                                                                        <  1:672148/47‑1 (MQ=255)                                                                                                                                                                                                                                                       gTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCtat                                                                                                                                                                                                                                <  2:474727/55‑1 (MQ=255)                                                                                                                                                                                                                                                       gTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCaa                                                                                                                                                                <  1:598971/119‑1 (MQ=255)                                                                                                                                                                                                                                                         ttACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGa                                                                                                                                                                                                             >  1:73486/1‑72 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACGGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg                                                                                                                                                                                                                  >  1:525488/1‑66 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAat                                                                                                                                                                                                     >  1:288882/1‑79 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGAt                                                            >  1:59081/1‑216 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATg                                                           >  2:466532/1‑217 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTAGTTTTGAACATAgg                                                                                                                    >  2:76199/1‑160 (MQ=255)                                                                                                                                                                                                                                                          tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTCGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCNCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCg  >  1:522593/1‑274 (MQ=255)                                                                                                                                                                                                                                                             ccTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGca                                                                                                                                                                                                         <  2:73485/72‑1 (MQ=255)                                                                                                                                                                                                                                                              cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCg                                                                                                                                                                                                              <  2:525481/66‑1 (MQ=255)                                                                                                                                                                                                                                                              cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCg                                                                                                                                                                                                 <  2:288877/79‑1 (MQ=255)                                                                                                                                                                                                                                                              cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCt                                                                                                                <  1:76200/160‑1 (MQ=255)                                                                                                                                                                                                                                                              cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGt                                                        <  2:59080/216‑1 (MQ=255)                                                                                                                                                                                                                                                              cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGACATAGGAGGGCCGGATTTACATTGGCGATGCGtt                                                       <  1:466539/217‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCta                                                                                                                                                                                                                                 >  2:238771/1‑44 (MQ=255)                                                                                                                                                                                                                                                                 aTAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATATGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTGCCATACaaaa                                                                                                 >  2:705652/1‑172 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        GCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCG  >  CP009273/4368356‑4368878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.