New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4368615 =	58 (1.510)	6 (0.170)	5/294	NT	10.1%	coding (147/1134 nt)	ampC	penicillin‑binding protein; beta‑lactamase, intrinsically weak
	?	CP009273	4368733 =	52 (1.440)					coding (29/1134 nt)	ampC	penicillin‑binding protein; beta‑lactamase, intrinsically weak

TCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCA  >  CP009273/4368474‑4368995                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        cccgaaaaaggCGTNGCCACCAAGGCAGCCAGTAAATGGTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGAAGGGCTGTTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcg                                                                                                                                                                                                                                                          <  2:516196/265‑1 (MQ=255)                   acccAGCACGCCAGTAAATGTTTTGCTGATCGAACCTAACTCACACATCGTTTGCTGTGTGACTGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGt                                                                                                                                                                                                                                       <  2:302876/275‑1 (MQ=255)                    ccaAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTGGCTGTGGGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCTTCAttggtcgcgtattcc                                                                                                                                                                                                                                        <  1:148165/274‑14 (MQ=255)                           cccccacctaTGCTTTTCTGACCGGAGCTGACTCAAGTGTCCTTTGGTGTAGTACTGGATGGTTTGTGGCGATGTCAGTATAGACCCAGGTAACGTGATTAGGTTTACCATGTTAAGTGACCGCCACCGCCATACACGGGATCTTTTGTTGCTATATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGGGGGGCGGCAAATGTGGCGCAAGGGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGttt                                                                                                                                                                                                                                <  2:95815/265‑1 (MQ=255)                           cGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACATCGTTTGCGGTGTGACGGGCTGTTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGttt                                                                                                                                                                                                                                <  2:663863/274‑1 (MQ=255)                                         ttGCTGACCGATCCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGTTTTTTGGCGATGTCCGCATAGTCTCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAGTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGAGCAGAGCGTAGGTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGcc                                                                                                                                                                                                                 <  1:147988/275‑1 (MQ=255)                                                    aCCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATNCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAggag                                                                                                                                                                                                      >  1:612212/1‑273 (MQ=255)                                                       tAAATCAAACAACGTTTGCGGTGTGAAGTGCTGCTTTTTGGCGATTTCCGCATAGCCCCAGGAAAAGTAATAAGGTTTACCCTGATATATTACCGCCGCCGCCATACCCGGGATCTTTTGGTGCTCTATAAGCGGGGTAATTGTGCGATGCATAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGc                                                                                                                                                                                                   <  1:371446/275‑1 (MQ=255)                                                                       tgcggtttgtagggTTGCTTTGTGGGTATGTACGCATAGCCCTAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCg                                                                                                                                                                                   <  1:319609/264‑1 (MQ=255)                                                                                                                        aGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGTGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAACACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGAANTGTTAGAGTGTAAAGACAACAATCAGCTTTACAAccttcactatta                                                                                                                                  >  2:439154/1‑264 (MQ=255)                                                                                                                              aaGGTTTACCCGGTAAAATTACCGCCACCGCCATACCCGGGATTTTTTGTTGGTCTATAAGCGGGGTAATTGTGCGATGAACAATATCGTGGATTTGTGGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCa                                                                                                                            <  2:612203/275‑1 (MQ=255)                                                                                                                                    tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGAt                                                                                                                                                                                 >  1:59081/1‑216 (MQ=255)                                                                                                                                    tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATg                                                                                                                                                                                >  2:466532/1‑217 (MQ=255)                                                                                                                                    tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTAGTTTTGAACATA‑gg                                                                                                                                                                                                                                         >  2:76199/1‑160 (MQ=255)                                                                                                                                    tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTCGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCNCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCg                                                                                                                       >  1:522593/1‑274 (MQ=255)                                                                                                                                        cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCt                                                                                                                                                                                                                                     <  1:76200/160‑1 (MQ=255)                                                                                                                                        cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGt                                                                                                                                                                             <  2:59080/216‑1 (MQ=255)                                                                                                                                        cTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGACATAGGAGGGCCGGATTTACATTGGCGATGCGtt                                                                                                                                                                            <  1:466539/217‑1 (MQ=255)                                                                                                                                           aTAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATATGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTGCCATACaaaa                                                                                                                                                                                                                      >  2:705652/1‑172 (MQ=255)                                                                                                                                               ATTACCGCCACCGCCATACCCGGGATCTTTTATTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCACACAAACCGGc                                                                                                                                                                                                                  >  1:705662‑M1/1‑172 (MQ=255)                                                                                                                                                    CGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAgg                                                                                                                                                                                                                                                                   <  1:223663‑M1/119‑1 (MQ=255)                                                                                                                                                        accgccaTACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCa                                                                                                                                                                                                                                                               <  2:223658/119‑1 (MQ=255)                                                                                                                                                                      gATCTTTTGTTGCTCTATAAGCGGGGAAATTGTGGGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAgga                                                                                                                                                                                                       >  1:466034/1‑159 (MQ=255)                                                                                                                                                                        tCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGTACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACaa                                                                                                                                              <  1:378522/215‑1 (MQ=255)                                                                                                                                                                          ttttGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGc                                                                                                                                                                                                   <  2:466027/160‑1 (MQ=255)                                                                                                                                                                            ttgttgCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATGGTAACGACACCAAACAGCGTGACAACTGGCAGGATAGCAGCCAGCCCGTAGAAAACCCAATTGCCCGCAGCAACTTTGATTTTCATATc                                                                              >  2:597300/1‑275 (MQ=255)                                                                                                                                                                                       taAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt                                                                   <  1:580046/275‑1 (MQ=255)                                                                                                                                                                                               gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGtttt                                                                                                                                                                                                                                                   >  2:247486/1‑92 (MQ=255)                                                                                                                                                                                               gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAAc                                                                                                                                                                                                                     >  2:503398/1‑121 (MQ=255)                                                                                                                                                                                                gaaTTGTGGGGTANACTATTTTGTTTTTTTGTGGAGGGGCAGCAAATGGGGAGCAAGGGGATGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACCTA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa                                                           <  2:522586/273‑1 (MQ=255)                                                                                                                                                                                                   ttGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAAc                                                                                                                                                                                                                                               <  1:247491/92‑1 (MQ=255)                                                                                                                                                                                                   ttGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGcc                                                                                                                                                                                                                 <  1:503405/121‑1 (MQ=255)                                                                                                                                                                                                             aattaccccgcttatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTg                                                                                                                                                                                                                                    >  2:511974‑M2/56‑92 (MQ=255)                                                                                                                                                                                                             aattaccccgcttatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGc                                                                                                                                                                                                   >  1:50924‑M2/56‑125 (MQ=255)                                                                                                                                                                                                                aaTATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAg                                                                                                                    >  2:311314/1‑201 (MQ=255)                                                                                                                                                                                                                 accccgcttatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGttt                                                                                                                                                                                                                                <  1:511981‑M2/41‑1 (MQ=255)                                                                                                                                                                                                                 accccgcttatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGa                                                                                                                                                                                               <  2:50924‑M2/74‑1 (MQ=255)                                                                                                                                                                                                                    tCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGaaaa                                                                                                                <  1:311320/201‑1 (MQ=255)                                                                                                                                                                                                                     cGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTg                                                                                                                                                                                                                                    >  1:469173/1‑84 (MQ=255)                                                                                                                                                                                                                     cGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGTATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTAAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACAACAGCg                                     >  1:397839/1‑275 (MQ=255)                                                                                                                                                                                                                       ttGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTGACGACTCCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATc                                                                       >  1:627113/1‑240 (MQ=255)                                                                                                                                                                                                                       ttGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTg                                                                                                                                                                                                                                    >  1:57223/1‑82 (MQ=255)                                                                                                                                                                                                                       ttGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACaa                                                                                                                                              >  2:628356/1‑168 (MQ=255)                                                                                                                                                                                                                         tatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATagga                                                                                                                                                                                                       >  1:107836‑M2/44‑108 (MQ=255)                                                                                                                                                                                                                         gATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGttt                                                                                                                                                                                                                                <  2:469166/84‑1 (MQ=255)                                                                                                                                                                                                                          aTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCag                                                                                                                                                                                                                                                              >  1:28478/1‑54 (MQ=255)                                                                                                                                                                                                                          aTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAAc                                                                                                                                                                                                                     >  2:32075/1‑94 (MQ=255)                                                                                                                                                                                                                          aTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACAtt                                                                                                                                                                                       >  1:276849/1‑124 (MQ=255)                                                                                                                                                                                                                          aTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGGCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAAc                                                                                                                                                                                                                     >  1:189039/1‑94 (MQ=255)                                                                                                                                                                                                                           tttGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGttt                                                                                                                                                                                                                                <  2:57223/82‑1 (MQ=255)                                                                                                                                                                                                                           tttGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGt                                                                                                                                          <  1:628365/168‑1 (MQ=255)                                                                                                                                                                                                                             gagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGc                                                                                                                                                                                                   <  2:107835‑M2/70‑1 (MQ=255)                                                                                                                                                                                                                              gttgAGGGGCAGGAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAAGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGa                            <  1:439161/275‑1 (MQ=255)                                                                                                                                                                                                                              gttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcg                                                                                                                                                                                                                                                          <  2:28478/54‑1 (MQ=255)                                                                                                                                                                                                                              gttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGcc                                                                                                                                                                                                                 <  1:32075/94‑1 (MQ=255)                                                                                                                                                                                                                              gttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCg                                                                                                                                                                                   <  2:276844/124‑1 (MQ=255)                                                                                                                                                                                                                                ggAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGTAGAGCGTCGTTTTGAACATA‑GGGGCTGGTTTCCAGATAAAACGGCCCGCCAGAGGAGGGCGGGATTTACATTGGCGATGCGTTAGATTTTACCGACACCAATCAGCGTGACAACTGt                                                                                                                                          <  1:357319/162‑1 (MQ=255)                                                                                                                                                                                                                                                  gAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATANCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGAAATAca        >  1:602701/1‑274 (MQ=255)                                                                                                                                                                                                                                                    gCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCCGATCGTGCATCGCGTGGTGCATACGGTGGAAACCACACCACAGAGGCAGAACCACCAGCAGNGAAAGGAATagg        >  2:524367/1‑271 (MQ=255)                                                                                                                                                                                                                                                    gCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGAACATCAGGAACAGGAATAc         >  1:67788/1‑272 (MQ=255)                                                                                                                                                                                                                                                       agagGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCg                                                                             >  1:258306/1‑201 (MQ=255)                                                                                                                                                                                                                                                        gagGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATAATCAGGAACAGGAATACGAGACCa  >  1:139141/1‑275 (MQ=255)                                                                                                                                                                                                                                                          ggcggtaattAATAAGGCGCAGAGCGTCGTTTTGaa                                                                                                                                                                                                                                                >  1:254127‑M2/11‑36 (MQ=255)                                                                                                                                                                                                                                                           gcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGAGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCa                                                                         <  2:258301‑M2/192‑1 (MQ=255)                                                                                                                                                                                                                                                            cggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAAc                                                                                                                                                                                                                     >  2:92299‑M2/9‑60 (MQ=255)                                                                                                                                                                                                                                                              gtaattAATAAGGCGCAGAGCGTCGTTTTGAACATa                                                                                                                                                                                                                                            <  2:254122‑M2/30‑1 (MQ=255)                                                                                                                                                                                                                                                                aattAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTGCCATACAAAACGGcc                                                                                                                                                                                                                 <  1:92300‑M2/56‑1 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        TCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATA‑GGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCA  >  CP009273/4368474‑4368995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.