New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4398990	44 (1.270)	15 (0.430)	5/284	NT	25.4%	noncoding (21/98 nt)	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 4399051	NA (NA)					noncoding (82/98 nt)	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

CGGCAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGA  >  CP009273/4398723‑4399222                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                         cggcAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAGGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatc                                                                                                                                                                                                                                     >  1:398320‑M1/1‑268 (MQ=255) cggcAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                                                                                                                                          >  1:280555/1‑268 (MQ=255) cggcAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCAACCAAAGCGANGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatcc                                                                                                                                                                                                                                    >  1:661919‑M1/1‑268 (MQ=255) cggaAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGAGGTGAGAAAAAAACGAAGCAGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAACGCGAAGCGTGCGGAGAAGAAAAACGTGGCAGAGTGATCAATACCCTCTGTACAAGAAGCGGGTTAGATTGCTGACAAACTGCGCTTAGTTAATGCCGGCTGCGGCGNGCACGCCttctca                                                                                                                                                                                                                                    >  2:532677‑M1/1‑268 (MQ=255)   gaaagcGTCGTCAGGTCGTTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggc                                                                                                                                                                                                                                 <  1:587201‑M1/273‑10 (MQ=255)     aaacgggggcaggccgggaAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGGGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggc                                                                                                                                                                                                                                 <  2:661910‑M1/264‑10 (MQ=255)     aaGCGTCGTCAGGTCGGTAAAAAGGTAAACGTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGNAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTGCATGCCGGATGCGGCGTGAACGCCttat                                                                                                                                                                                                                                      <  1:532685‑M1/268‑5 (MQ=255)                  aagaaaaaaaGGAAAAATTTGACAAAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAATACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc                                                                                                                                                                                                                   <  2:583474/269‑1 (MQ=255)                     gTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAt                                                                                                                                                                                                               >  1:179632/1‑275 (MQ=255)                         cccgggaaaCTTTGAGCCCGACAGAACCTGCCGCTGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCa                                                                                                                                                                                                            <  2:221545/268‑1 (MQ=255)                                  aagttgacaaagtaGCGGCTTTCGGGGGTAGAAAAAAACGAAGACGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGACATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGTCGAAGAAAAAAATGGCAGACTGATCAATACCCTCTTTAAGAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGc                                                                                                                                                                                                   <  1:230501/261‑1 (MQ=38)                                     ttaGCCAGACAGCGCCTACCGCGGTGAGAAAAAAACGAAGCCGAAAGCAGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCagag                                                                                                                                                                                               <  1:168864/273‑1 (MQ=255)                                                      tCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAT                                                                                                                                                                               >  1:453934‑M2/1‑274 (MQ=255)                                                           ggTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAAGCAAATTCAATATATTGCATAGCTCATGTNGACCGGATAAActc                                                                                                                                                                         >  2:532953/1‑273 (MQ=255)                                                                           aGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaaaa                                                                                                                                                         >  1:411990/1‑275 (MQ=255)                                                                                     ggcgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAANAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAAAGTAGTGCATCAAGCAAAACGTAaacaac                                                                                                                                               <  1:532961/275‑1 (MQ=255)                                                                                     ggcgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTNTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                               <  1:665464/275‑1 (MQ=255)                                                                                       ggacgaaagcgatgagcAAAGCGAACATGCCATCGGCGAAAACGCAGAAAATAGCTGAAGCGACCAAAGCGAGGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATAGATTGCAGAGATCCTGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                                                                                                                                             <  2:43777/262‑1 (MQ=37)                                                                                       cgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGAAAAACGNAaacaacta                                                                                                                                             >  2:260401/1‑273 (MQ=255)                                                                                                 gggcgtgaatcagcggtaacagacgtttatcttcacggccttttaaaataaagacttcctgaaaacgttcaggggcgcgctccagcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatata                                                                                                                                                                                                       <  1:355535‑M1/56‑1 (MQ=255)                                                                                                     gtgaatcagcggtaacagacgtttatcttcacggccttttaaaataaagacttcctgaaaacgttcaggggcgcgctccagcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGc                                                                                                                                                                                                   >  2:355529‑M1/148‑207 (MQ=255)                                                                                                                           cGAAAACGCAGAAATTAGCTGCAGCGACCAAAGCGTAGCGTGCGGCTAAGAAAAAAGTGGCAGAGTGATCAATACCCTTTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTTGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACg                                                                                                         <  1:453257/275‑1 (MQ=255)                                                                                                                                                cAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGt                                                                                                                                                                      >  2:129471/1‑193 (MQ=255)                                                                                                                                                  gCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAgcg                                                                                   <  1:260406/274‑1 (MQ=255)                                                                                                                                                    gACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                                                                  <  1:129472/193‑1 (MQ=255)                                                                                                                                                            agcagagtgagaggaagaaAAAANGTGCAGAGTGATCAATACCCTCGTTCATAGAATAGGGGTCGAGTGCTTACAAAATGCGCTTTGGTCATGCCTGATGCGGCGTGACCGCCCTAGCCGGCCTACATAATCACGTAAATTCAATATATGGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGaa                                                                         <  2:430242/261‑1 (MQ=255)                                                                                                                                                               agcgTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTACAGGCCCTGCTGGAGAGCGcccc                                                                             >  1:430249/1‑267 (MQ=255)                                                                                                                                                               agcgTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat                                                                                                                                                                                                      >  1:59944/1‑146 (MQ=255)                                                                                                                                                                   tGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa                                                                                                                                                                                                  <  2:59943/146‑1 (MQ=255)                                                                                                                                                                     cggcgAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTANATAATCACGCACATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAgg                                                               <  1:654882/275‑1 (MQ=255)                                                                                                                                                                                   cagcagggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatata                                                                                                                                                                                                       <  1:222772‑M1/56‑1 (MQ=255)                                                                                                                                                                                       agggcctgcactgcgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGc                                                                                                                                                                                                   >  2:222767‑M1/66‑125 (MQ=255)                                                                                                                                                                                            tGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCTAATCACGCAAATTCAATATATTGCAGAGATCATTTAGGCCGGATAAACGTAGTGCCTCCGGCAAAACGTAAACAACGAGTCCATTAATGAGCGAAATGATTTACGGCCTCCACCAAGTCCAGGCCCTGCTGAAGCCCGCCCCTCCACGATTTACGGAAGACTTTTTTTTNAAAGGccag                                        >  2:263125/1‑273 (MQ=37)                                                                                                                                                                                                    cgtggatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatata                                                                                                                                                                                                       <  2:547973‑M1/56‑1 (MQ=255)                                                                                                                                                                                                      ccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAgg                                            >  1:428598/1‑261 (MQ=255)                                                                                                                                                                                                        tctTTAAAAGAAGAGGGTTAGATTGCTGACAAGATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAACTTCAATATATTGAAGTGTGCATGTAGGCCGGATcaa                                                                                                                                                                            <  2:228338‑M2/131‑4 (MQ=255)                                                                                                                                                                                                        tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctaca                                                                                                                                                                                                                            >  1:555820‑M1/1‑69 (MQ=255)                                                                                                                                                                                                        tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                   >  2:722062/1‑156 (MQ=255)                                                                                                                                                                                                        tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGCACATTAATGAGCGAAATGAttt                                                                                                                     >  1:558216/1‑186 (MQ=255)                                                                                                                                                                                                        gatgccgtaaatcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGc                                                                                                                                                                                                   >  1:547982‑M1/49‑108 (MQ=255)                                                                                                                                                                                                         ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaaa                                                                                                                                                                                                                >  1:385005/1‑94 (MQ=255)                                                                                                                                                                                                          tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca                                                                                                                                                 >  1:80058/1‑156 (MQ=255)                                                                                                                                                                                                          tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCC                                                                                                                                                                                   <  2:646640‑M2/122‑1 (MQ=255)                                                                                                                                                                                                            tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt                                                                                                                                                                                                                        <  2:555811/83‑1 (MQ=255)                                                                                                                                                                                                            tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTa                                                                                                                                                                        <  1:228343/131‑1 (MQ=255)                                                                                                                                                                                                            tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACgg                                                                                                                 <  2:558207/186‑1 (MQ=255)                                                                                                                                                                                                            tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGGGCAGCAGGCAAAACGGAaacaac                                                                                                                                               <  1:722072/156‑1 (MQ=255)                                                                                                                                                                                                             aaaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCa                                                                                                                                                                                                            <  2:384999/94‑1 (MQ=255)                                                                                                                                                                                                              aaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                                                                                                                                             <  2:80057/156‑1 (MQ=255)                                                                                                                                                                                                              aaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAT                                                                                                                                                                               >  1:646649‑M2/1‑122 (MQ=255)                                                                                                                                                                                                                  aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGC                                                                                                                                                                                    <  1:94977‑M2/113‑1 (MQ=255)                                                                                                                                                                                                                   tcatttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCaa                                                                                                                                                                                                           <  2:494433‑M1/52‑1 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatc                                                                                                                                                                                                                                     >  2:110730‑M1/1‑57 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt                                                                                                                                                                                                                                         >  2:515219‑M1/1‑57 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc                                                                                                                                                                                                                       >  2:92597/1‑76 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc                                                                                                                                                                                                                       >  2:232067/1‑76 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc                                                                                                                                                                                                             >  1:465477/1‑86 (MQ=255)                                                                                                                                                                                                                    gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGTCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTg                >  1:373200/1‑275 (MQ=255)                                                                                                                                                                                                                      gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGA                                                                                                                                                                                >  2:94976‑M2/1‑113 (MQ=255)                                                                                                                                                                                                                       ttcgctcattaatgtactcgttgtttacgttttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatata                                                                                                                                                                                                       >  1:494440‑M1/34‑89 (MQ=255)                                                                                                                                                                                                                        gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggc                                                                                                                                                                                                                                 <  1:110731‑M1/62‑10 (MQ=255)                                                                                                                                                                                                                        gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc                                                                                                                                                                                                                   <  1:232072/76‑1 (MQ=255)                                                                                                                                                                                                                        gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc                                                                                                                                                                                                                   <  1:92598/76‑1 (MQ=255)                                                                                                                                                                                                                        gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAata                                                                                                                                                                                                         <  2:465470/86‑1 (MQ=255)                                                                                                                                                                                                                        gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGACttatc                                                                                                                                                                                                                                     <  1:515226‑M1/58‑6 (MQ=255)                                                                                                                                                                                                                            gATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc                                                                                                                                                                                                                       >  1:401585/1‑68 (MQ=255)                                                                                                                                                                                                                                gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGc                                                                                                                                                                                                                   <  2:401578/68‑1 (MQ=255)                                                                                                                                                                                                                                 cTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaa                                                                                                                                                                                                       >  2:132310‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                                 cTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattga                                                                                                                                                                                                        >  1:587009‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                                 cTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattga                                                                                                                                                                                                        >  2:662582‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                                  tGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacataatctctgcaatctattgaa                                                                                                                                                                                                       >  1:61064‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaa                                                                                                                                                                                                       >  2:464310‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaa                                                                                                                                                                                                       >  2:464732‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattga                                                                                                                                                                                                        >  2:279592‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCtta                                                                                                                                                                                                                                       >  1:334324‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatc                                                                                                                                                                                                       >  2:487956/1‑77 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                   >  1:597509/1‑130 (MQ=255)                                                                                                                                                                                                                                  tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAACCAACGAGTACATTAATGAGCGACATGATTTACGGAATCCACGCAGTGCAGGCCCTGCTGGAGCGCAACCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTAAAGAGAAACAGCTGTTAACTCTGATACACGccataga  >  1:673319/1‑270 (MQ=37)                                                                                                                                                                                                                                     cAAAATGCGCTTTGTTCATGCCGGATGGGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaattt                                                                                                                                                                                                    <  2:587000‑M1/78‑39 (MQ=255)                                                                                                                                                                                                                                     cAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaatttg                                                                                                                                                                                                   <  1:132311‑M1/79‑40 (MQ=255)                                                                                                                                                                                                                                     cAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaattt                                                                                                                                                                                                    <  1:662591‑M1/78‑39 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaatttg                                                                                                                                                                                                   <  1:464317‑M1/78‑40 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaatttg                                                                                                                                                                                                   <  1:464739‑M1/78‑40 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccggcctacatgatctctgcaatatattgaattt                                                                                                                                                                                                    <  1:279597‑M1/77‑39 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCttatccg                                                                                                                                                                                                                                   <  2:334318‑M1/46‑8 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                               <  2:597500/130‑1 (MQ=255)                                                                                                                                                                                                                                      aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCCACATTATCACGCGAATTCAATATATTGc                                                                                                                                                                                                   <  1:487963/78‑1 (MQ=17)                                                                                                                                                                                                                                                                  gcgTGAACGCCTTATCCGGCCTACATAATCACGCcaa                                                                                                                                                                                                                >  2:464724/1‑37 (MQ=255)                                                                                                                                                                                                                                                                  gcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAAGATATTGCAGAGATCATGTAGGCCGGATaaa                                                                                                                                                                            >  1:92844/1‑73 (MQ=255)                                                                                                                                                                                                                                                                   cgTGAACGCCttatccggcctacatgatctctgcaatatattgaa                                                                                                                                                                                                       >  2:356136‑M1/1‑10 (MQ=255)                                                                                                                                                                                                                                                                       aaCGCCttatccggcctacatgatctctgcaatatattgaatttg                                                                                                                                                                                                   <  1:356142‑M1/45‑40 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                         CGGCAAGCGTCGTCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGA  >  CP009273/4398723‑4399222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.