New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4398990	44 (1.270)	15 (0.430)	5/284	NT	25.4%	noncoding (21/98 nt)	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 4399051	NA (NA)					noncoding (82/98 nt)	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

GGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGTTGGCAAACCGCCAATATCTCGACGAGAAAAGCGACGGTGCCGTGCATCAGGGCATTATCGCCCGCGTGAAGCCA  >  CP009273/4398781‑4399319                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                             ggTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAAGCAAATTCAATATATTGCATAGCTCATGTNGACCGGATAAActc                                                                                                                                                                                                                                                                          >  2:532953/1‑273 (MQ=255)                 aGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaaaa                                                                                                                                                                                                                                                          >  1:411990/1‑275 (MQ=255)                           ggcgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAANAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAAAGTAGTGCATCAAGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  1:532961/275‑1 (MQ=255)                           ggcgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTNTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  1:665464/275‑1 (MQ=255)                             ggacgaaagcgatgagcAAAGCGAACATGCCATCGGCGAAAACGCAGAAAATAGCTGAAGCGACCAAAGCGAGGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATAGATTGCAGAGATCCTGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                                                                                                                                                                                                                                              <  2:43777/262‑1 (MQ=37)                             cgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGAAAAACGNAaacaacta                                                                                                                                                                                                                                              >  2:260401/1‑273 (MQ=255)                                                                 cGAAAACGCAGAAATTAGCTGCAGCGACCAAAGCGTAGCGTGCGGCTAAGAAAAAAGTGGCAGAGTGATCAATACCCTTTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTTGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACg                                                                                                                                                                                                          <  1:453257/275‑1 (MQ=255)                                                                                      cAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGt                                                                                                                                                                                                                                                                       >  2:129471/1‑193 (MQ=255)                                                                                        gCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAgcg                                                                                                                                                                                    <  1:260406/274‑1 (MQ=255)                                                                                          gACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                                                                                                                                                                   <  1:129472/193‑1 (MQ=255)                                                                                                  agcagagtgagaggaagaaAAAANGTGCAGAGTGATCAATACCCTCGTTCATAGAATAGGGGTCGAGTGCTTACAAAATGCGCTTTGGTCATGCCTGATGCGGCGTGACCGCCCTAGCCGGCCTACATAATCACGTAAATTCAATATATGGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGaa                                                                                                                                                                          <  2:430242/261‑1 (MQ=255)                                                                                                     agcgTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTACAGGCCCTGCTGGAGAGCGcccc                                                                                                                                                                              >  1:430249/1‑267 (MQ=255)                                                                                                           cggcgAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTANATAATCACGCACATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAgg                                                                                                                                                                <  1:654882/275‑1 (MQ=255)                                                                                                                                  tGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCTAATCACGCAAATTCAATATATTGCAGAGATCATTTAGGCCGGATAAACGTAGTGCCTCCGGCAAAACGTAAACAACGAGTCCATTAATGAGCGAAATGATTTACGGCCTCCACCAAGTCCAGGCCCTGCTGAAGCCCGCCCCTCCACGATTTACGGAAGACTTTTTTTTNAAAGGccag                                                                                                                                         >  2:263125/1‑273 (MQ=37)                                                                                                                                            ccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAgg                                                                                                                                             >  1:428598/1‑261 (MQ=255)                                                                                                                                              tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                                                                                                    >  2:722062/1‑156 (MQ=255)                                                                                                                                              tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGCACATTAATGAGCGAAATGAttt                                                                                                                                                                                                                      >  1:558216/1‑186 (MQ=255)                                                                                                                                                tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca                                                                                                                                                                                                                                                  >  1:80058/1‑156 (MQ=255)                                                                                                                                                  tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTa                                                                                                                                                                                                                                                                         <  1:228343/131‑1 (MQ=255)                                                                                                                                                  tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACgg                                                                                                                                                                                                                  <  2:558207/186‑1 (MQ=255)                                                                                                                                                  tAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGGGCAGCAGGCAAAACGGAaacaac                                                                                                                                                                                                                                                <  1:722072/156‑1 (MQ=255)                                                                                                                                                    aaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                                                                                                                                                                                                                                              <  2:80057/156‑1 (MQ=255)                                                                                                                                                          gagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGTCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTg                                                                                                                 >  1:373200/1‑275 (MQ=255)                                                                                                                                                                        tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                                                                                                    >  1:597509/1‑130 (MQ=255)                                                                                                                                                                        tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAACCAACGAGTACATTAATGAGCGACATGATTTACGGAATCCACGCAGTGCAGGCCCTGCTGGAGCGCAACCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTAAAGAGAAACAGCTGTTAACTCTGATACACGccataga                                                                                                   >  1:673319/1‑270 (MQ=37)                                                                                                                                                                            aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  2:597500/130‑1 (MQ=255)                                                                                                                                                                                                        gcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAAGATATTGCAGAGATCATGTAGGCCGGATaaa                                                                                                                                                                                                                                                                             >  1:92844/1‑73 (MQ=255)                                                                                                                                                                                                                            cTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATc                                                                                                                                                                                                              >  1:165237/1‑116 (MQ=255)                                                                                                                                                                                                                              aCATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGc                                                                                                                                                                                                         >  1:262018/1‑119 (MQ=255)                                                                                                                                                                                                                                aTAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACg                                                                                                                                                                                                          <  2:165234/116‑1 (MQ=255)                                                                                                                                                                                                                                aTAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGtt                                                                                                                        >  2:123307/1‑198 (MQ=255)                                                                                                                                                                                                                                  aaTCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTg                                                                                                                                                                                                     <  2:262013/119‑1 (MQ=255)                                                                                                                                                                                                                                    tCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCg                                                                                                                    <  1:123308/198‑1 (MQ=255)                                                                                                                                                                                                                                       cGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGc                                                                                                                                            >  1:320420/1‑171 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttg                                                                                                                                                                                                                                      <  1:132311‑M2/79‑41 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcatttt                                                                                                                                                                                                                                       <  1:464317‑M2/78‑40 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcatttt                                                                                                                                                                                                                                       <  1:464739‑M2/78‑40 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgtt                                                                                                                                                                                                                                                                        <  1:356142‑M2/45‑7 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                                                                                                    >  2:340158/1‑65 (MQ=255)                                                                                                                                                                                                                                         cAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAg                                                                                                                                                             >  2:508388/1‑152 (MQ=255)                                                                                                                                                                                                                                          aaaTTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttg                                                                                                                                                                                                                                      <  1:662591‑M2/78‑41 (MQ=255)                                                                                                                                                                                                                                          aaaTTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcatttt                                                                                                                                                                                                                                       <  1:279597‑M2/77‑40 (MQ=255)                                                                                                                                                                                                                                          aaaTTCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccccatccggcatgaacaaagcgcattttg                                                                                                                                                                                                                                      <  2:587000‑M2/78‑41 (MQ=255)                                                                                                                                                                                                                                           aaTTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTg                                                                                                                                        <  2:320414/171‑1 (MQ=255)                                                                                                                                                                                                                                            aTTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGt                                                                                                                                                                                                                                                                       >  2:610921/1‑43 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcag                                                                                                                                                                                                                                  >  2:132310‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtca                                                                                                                                                                                                                                   >  2:464732‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtca                                                                                                                                                                                                                                   >  2:464310‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacg                                                                                                                                                                                                                                                                    >  2:356136‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  1:340164/65‑1 (MQ=255)                                                                                                                                                                                                                                             ttCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACTTTTTCAGGAAGTCtt                                                                                                                                                         <  1:508395/152‑1 (MQ=255)                                                                                                                                                                                                                                             ttCAATAGATTGCAGAGATTATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcactatgtca                                                                                                                                                                                                                                   >  1:61064‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                              tCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcag                                                                                                                                                                                                                                  >  2:662582‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                              tCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcag                                                                                                                                                                                                                                  >  1:587009‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                              tCAATATATTGCAGAGATCATGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtca                                                                                                                                                                                                                                   >  2:279592‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                                aaTATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                                                                                                                                                                   <  1:610930/43‑1 (MQ=255)                                                                                                                                                                                                                                                  attcttGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGTTGGCAAACCGCCAATATCTCGACGAGAAAAGCGACGGTGCCGTGCATCAgg                         <  2:179629/271‑1 (MQ=255)                                                                                                                                                                                                                                                       tGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATa                                                                                                                                  >  2:637453/1‑165 (MQ=255)                                                                                                                                                                                                                                                        gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                                                                                                    >  1:676589/1‑50 (MQ=255)                                                                                                                                                                                                                                                        gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTg                                                                                                                                                                                                     >  1:669973/1‑97 (MQ=255)                                                                                                                                                                                                                                                           gagaTCATGTAGTCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACg                                                                                                                              <  1:637462/165‑1 (MQ=255)                                                                                                                                                                                                                                                            agaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  2:676580/50‑1 (MQ=255)                                                                                                                                                                                                                                                            agaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAgg                                                                                                                                                                                                 <  2:669964/97‑1 (MQ=255)                                                                                                                                                                                                                                                            agaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTc                                                                                                                                                           >  1:146081/1‑135 (MQ=255)                                                                                                                                                                                                                                                              aTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAgg                                                                                                                                             >  2:577489/1‑147 (MQ=255)                                                                                                                                                                                                                                                              aTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTGGAGGCTCAGGGAGTGGTTATCCAGTTGGCAAACCGCCAATATCTAGACGAGAAAAGCGACGGTGCCGTGCATAAAGGCATTATCGcc              >  1:74161/1‑274 (MQ=255)                                                                                                                                                                                                                                                                cATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca                                                                                                                                                                                                                                                  >  2:407867/1‑44 (MQ=255)                                                                                                                                                                                                                                                                cATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTa                                                                                                                                                       <  2:146080/135‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                                                                                                    >  2:14346/1‑41 (MQ=255)                                                                                                                                                                                                                                                                 aTGTAGGCCGGATAAACGTAGAGCCTCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTNGAGTCTCAGGGCGTGGTTATCCAGTTGGCAAACCGCCAATATCTCGACGAGAAAAGCGACGGTGCCGTGCATCAGGGCATTATCGCCcgc           >  1:488420/1‑274 (MQ=255)                                                                                                                                                                                                                                                                  tGTAGGCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctcttcttttaaaga                                                                                                                                                                                                         >  1:555820‑M2/1‑14 (MQ=255)                                                                                                                                                                                                                                                                  tGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGt                                                                                                                                         <  1:577498/147‑1 (MQ=255)                                                                                                                                                                                                                                                                    tAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                                                                                                                                                                                                                                              <  1:407874/44‑1 (MQ=255)                                                                                                                                                                                                                                                                     aGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaac                                                                                                                                                                                                                                                <  1:14346/41‑1 (MQ=255)                                                                                                                                                                                                                                                                       gCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctcttcttttaaagagggtattgatcactctgccacttttttcttcgccgcacgcttcgctttggtcgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttcttcgccgctttcggcttcgtttttttctccccgcggaaggcgctgtctggctcaaagtttacctttttcccggcctgcccccgttt      <  2:661910‑M2/273‑265 (MQ=255)                                                                                                                                                                                                                                                                       gCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctcttcttttaaagagggtattgatcactctgccacttttttcttcgccgcacgcttcgctttggtcgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttcttcgccgctttcggcttcgtttttttctcaccgcggaaggcgctgtctggctcaaagtttacctttttaacgacctgacgacgctttc    <  1:587201‑M2/275‑267 (MQ=255)                                                                                                                                                                                                                                                                       gCCGGATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaac                                                                                                                                                                                                                         <  1:110731‑M2/62‑54 (MQ=255)                                                                                                                                                                                                                                                                         cGGATAAggcgttcacgccgcatccggcatgaacaaagcgcatttt                                                                                                                                                                                                                                       <  2:334318‑M2/46‑40 (MQ=255)                                                                                                                                                                                                                                                                          tgagaaggcgtgcncgccgcagccggcattaactaagcgcagtttgtcagcaatctaacccgcttcttgtacagagggtattgatcactctgccacgtttttcttctccgcacgcttcgcgttggtcgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttcttcgccgctttctgcttcgtttttttctcacctcggaaggcgctgtctggctcaaagtttacctttttaccgacctgacgacgctttccg  >  2:532677‑M2/2‑6 (MQ=255)                                                                                                                                                                                                                                                                          ggATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctcttcttttaaagagggtattgatcactctgccacttttttcttcgccgcacgcntcgctttggttgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttcttcgccgctttcggcttcgtttttttctcaccgcggaaggcgctgtctggctcaaagtttacctttttaccgacctgacgacgcttgccg  >  1:661919‑M2/1‑6 (MQ=255)                                                                                                                                                                                                                                                                           gATAAgtcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaac                                                                                                                                                                                                                         <  1:515226‑M2/58‑54 (MQ=255)                                                                                                                                                                                                                                                                           gATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctcttcttttaaagagggtattgatcactctgccacctttttcttcgccgcacgcttcgctttggtcgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttcttcgccgctttcggcttcgtttttttctcaccgcggaaggcgctgtctggctcaaagtttacctttttaccgacctgacgacgcttgccg  >  1:398320‑M2/1‑5 (MQ=255)                                                                                                                                                                                                                                                                           gATAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctc                                                                                                                                                                                                                     >  2:110730‑M2/1‑5 (MQ=255)                                                                                                                                                                                                                                                                           gATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTg                                                                                                                                                                                                     >  1:547501/1‑78 (MQ=255)                                                                                                                                                                                                                                                                           gATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCAc                                                                                                           >  1:348385/1‑168 (MQ=255)                                                                                                                                                                                                                                                                            aTAAggcgttcacgccgcatccggcatgcacaaagcgcattttgtcagcaatctaaccctcttcttttaaagagggtattgatcactctgccacttttttcttcgccgcacgcttcgctttggtcgctgcagctattttctgcgttttcgccgatggctttttcgcttttctcgcgtctttctncgccgctttcggcttcgtttttttctcaccgcggaaggcgctgtctggctcaacgtttacctttttaccgacctgacgacgctt      <  1:532685‑M2/268‑265 (MQ=255)                                                                                                                                                                                                                                                                            aTAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTg                                                                                                                                                                                                     >  2:244319/1‑77 (MQ=255)                                                                                                                                                                                                                                                                             tAAggcgttcacgccgcatccggcatgaacaaagcgcattttgtca                                                                                                                                                                                                                                   >  1:334324‑M2/1‑3 (MQ=255)                                                                                                                                                                                                                                                                               aggcgttcacgccgcatccggcatgaacaaagcgcattttgtcagcaatctaaccctc                                                                                                                                                                                                                     >  2:515219‑M2/1‑1 (MQ=255)                                                                                                                                                                                                                                                                               aaCGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAgg                                                                                                                                                                                                 <  2:547492/78‑1 (MQ=255)                                                                                                                                                                                                                                                                               aaCGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGccc                                                                                                       <  2:348379/168‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                             GGTGAGAAAAAAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGTTGGCAAACCGCCAATATCTCGACGAGAAAAGCGACGGTGCCGTGCATCAGGGCATTATCGCCCGCGTGAAGCCA  >  CP009273/4398781‑4399319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.