New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4565134 =	46 (1.200)	4 (0.110)	4/296	NT	8.4%	pseudogene (1399/2937 nt)	yjiV	pseudogene; conserved hypothetical protein
	?	CP009273	4565298 =	44 (1.210)					pseudogene (1563/2937 nt)	yjiV	pseudogene; conserved hypothetical protein

TTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACC  >  CP009273/4564871‑4565390                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                 ttCTGCAATATATCCATTATCTTAAGCCTGAAGTGGTTAACGAAAACGGCGGCCCCCTTAAGGTTTCTGAAATGTTGTTGTGCCGGGAAGTCATGCGTCGCCCTAAACGGACTAACAGCCGGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTcaca                                                                                                                                                                                                                                                       <  1:420199/275‑1 (MQ=255)           taACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGgatg                                                                                                                                                                                                                                             >  1:105333/1‑275 (MQ=255)                   aTCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGACCCCTTAAGCTTTCTGAAATGTTGTTGTTCC‑GGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTAGCAGGAAAAAGGNTTAACGCTNGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGa                                                                                                                                                                                                                                    >  1:466179/1‑275 (MQ=255)                              gAAGTGTTTAATGAAAACGGCGGCACCCAGAAGCTTTCTGAAATGTTGTTGATCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGNATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGATAGCAACTTCACACAGCTGGATGATGAACTGAAAAACAGGa                                                                                                                                                                                                                           >  1:506123/1‑274 (MQ=255)                                                            aaGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAANAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCg                                                                                                                                                                                            <  1:658167/275‑1 (MQ=255)                                                                 ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTAAGTTCGCGAGAGCAACTTAACACAGCTGGATGATGATCTGAAAAACTGGATGGGTAGCCNTTTTTCTCCAANNATCGTcctcacc                                                                                                                                                                                        >  2:486988/1‑269 (MQ=255)                                                                  tCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACAGACTAACAGCCTGGAAACACAGGGGCTGGTTCCGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCACCTTCACACAGCTGGCTGATGAGATGAAAAAATGGAGTGGTAGACGTTTTTGATCAAAAttgcacctttaacc                                                                                                                                                                                      >  2:93008/1‑263 (MQ=255)                                                                   cTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGGCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGCAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGCTTACGTTGGATCNTTACGTTCNCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTAGTCCGTAACCCg                                                                                                                                                                                     >  1:466066/1‑275 (MQ=255)                                                                                      actctacgtGCGTAACCCTAAACGGAATAACAGCCTGGAAAAACAGGGGTTGGTTTATGGTGGTGACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACGGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGAGGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAg                                                                                                                                                                  <  2:105332/267‑1 (MQ=255)                                                                                        aaTTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGGGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGa                                                                                                                                                                 >  1:47169/1‑274 (MQ=255)                                                                                                 ccgtgattaaagaaatagtcaaaggctcggtcggtaaataaaaacggttgccatcgggtttcagtactgcaagcggtccggtaagttgggcccatgcttctttcagccatgtattgataatatcaatagttgccgcattgacggttttgaatccagcccccagcatcAGCAACtt                                                                                                                                                                                                                                                           <  1:496959‑M1/8‑1 (MQ=255)                                                                                                     cccTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGgat                                                                                                                                                                                                                                              >  1:315759/1‑184 (MQ=255)                                                                                                         aaaCGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGatgatg                                                                                                                                                                                                                                          <  2:315753/184‑1 (MQ=255)                                                                                                                             gacacATGGGGTGGTGCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGGGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCa                                                                                                                           <  2:47169/274‑1 (MQ=255)                                                                                                                             aaaacaTGGGTTGGTGCAGGTTGGTTACCAGGGGCTGGAGAAAATACTTACGTGCCCCTTTCCCGTGAATGAACAAGGATTAACTCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCCCCCAGCTGGATGATGAGCTGAAAATCTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCa                                                                                                                           <  2:506116/272‑1 (MQ=255)                                                                                                                                 caGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAAAGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTAGAGAGAGCAACTTCACACAGCTGGATTCTGAGCTGAAAAACTGGTTTGGTAGCCGTTTTTCATCAAAGTTAGTCCGAAACACGTAACGAACAGCTCCTGAAGATAAGCAGAACAGCCGCATTCCTCaacatccttnta                                                                                                                              >  2:255188/1‑258 (MQ=255)                                                                                                                                          gTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACtt                                                                                                                                                                                                                                                           >  1:122409/1‑134 (MQ=255)                                                                                                                                              aGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTcaca                                                                                                                                                                                                                                                       <  2:122408/134‑1 (MQ=255)                                                                                                                                                  taagagacAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACATTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCg                                                                                                       <  1:405610/267‑1 (MQ=255)                                                                                                                                                     ttACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGt                                                                                                   >  1:262562/1‑275 (MQ=255)                                                                                                                                                                      acctACATANGGGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCt                                                                                  <  2:262557/272‑1 (MQ=255)                                                                                                                                                                                   ccccTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAAt                                                                                                                                                                                 >  2:349126/1‑167 (MQ=255)                                                                                                                                                                                       ttGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCaaa                                                                                                                                                                             <  1:349132/167‑1 (MQ=255)                                                                                                                                                                                           cccatgcttctttcagccatgtattgataatatcaatagttgccgcattgacggttttgaatccagcccccagcatcAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCaaa                                                                                                                                       <  2:317715‑M1/124‑1 (MQ=255)                                                                                                                                                                                             tGGCAGGAAAAAGGATTAACGCTTGATGACTGTCGCGATTTTCTCAAGGTTACGTTTGATCATTACGTTCGCGAGAGCAACTGCACACAGCNGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGTGGGCAGGATTCACAACCGTCAATGCGGc                                                           <  1:502895/275‑1 (MQ=255)                                                                                                                                                                                              atgcttctttcagccatgtattgataatatcaatagttgccgcattgccggttttgaatccagcccccagcatcAGCAACTTCACACAGCTGGATGATGAGCTGAAAAAc                                                                                                                                                                                                                               <  1:675681‑M1/36‑1 (MQ=255)                                                                                                                                                                                               tgcttctttcagccatgtattgataatatcaatagttgccgcattgacggttttgaatccagcccccagcatcAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCg                                                                                                                                   >  1:317721‑M1/74‑201 (MQ=255)                                                                                                                                                                                               gctgtcgacagaaTTAACGCTGTATGACTGTCGCGATTTTCTCAAGGTTAAGTTGGGTAATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTTGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCa                                                          <  2:107052/262‑1 (MQ=255)                                                                                                                                                                                               gCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTCTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCAACGTTTAACGAAGTTGCGGATGCGGGGGGCTTGATTCAAAACCTTAAATACgtc                                                           >  2:502888/1‑271 (MQ=255)                                                                                                                                                                                               gCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTAACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCaa                                                         >  1:107053/1‑275 (MQ=255)                                                                                                                                                                                                cAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCt                                                                                                                                                                      >  2:359505/1‑165 (MQ=255)                                                                                                                                                                                                  ttctttcagccatgtattgataatatcaatagttgccgcattgacggttttgaatccagcccccagcatcAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGa                                                                                                                                                                                                                           >  2:675672‑M1/71‑110 (MQ=255)                                                                                                                                                                                                    aaaaaGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAg                                                                                                                                                                  <  1:359511/165‑1 (MQ=255)                                                                                                                                                                                                       aaGGATTAACGCTGGATGACGGGGGCGATTTTCTCAATGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCGGGAGGAGGAGCTGAAAAACTGGAGTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGat                                                 <  1:255193/275‑1 (MQ=255)                                                                                                                                                                                                         ggATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCt                                                                                                                                           >  1:495962/1‑183 (MQ=255)                                                                                                                                                                                                             tAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCaaa                                                                                                                                       <  2:495955/183‑1 (MQ=255)                                                                                                                                                                                                                    ggATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCaaa                                                                                                                                       >  2:418332/1‑176 (MQ=255)                                                                                                                                                                                                                        gACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCg                                                                                                                                   <  1:418339/176‑1 (MQ=255)                                                                                                                                                                                                                          cttgcgtGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTg                               <  1:93009/271‑1 (MQ=255)                                                                                                                                                                                                                          cTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCACAGTTGCTGATGCGGGGGGCTGGATTCAAAAACGTCAATGCGGGAACTATTGGTATTATCAATACactagcc                               >  2:175871/1‑268 (MQ=255)                                                                                                                                                                                                                              cgcgATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                <  1:175874/253‑1 (MQ=255)                                                                                                                                                                                                                                             gttaatgtgatacATTACGGTCGGCAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAAGTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAAc            <  2:78536/262‑1 (MQ=255)                                                                                                                                                                                                                                                      gATCATTACGTTCGCGAGAGCAACTTTACACAGCTGGATGATGAGCTGAAAAACTGGTTTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTAGCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGAcc  <  1:419652/275‑1 (MQ=255)                                                                                                                                                                                                                                                      gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTANCCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATTGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGCAAGATGCATGGGCCCAACTTACCGGAcc  <  1:486995/275‑1 (MQ=255)                                                                                                                                                                                                                                                      gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAg                                                                                                                                                                           >  1:711397/1‑106 (MQ=255)                                                                                                                                                                                                                                                      gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGc                                                                                                                                                 >  1:224557/1‑132 (MQ=255)                                                                                                                                                                                                                                                      gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                >  1:14041/1‑229 (MQ=255)                                                                                                                                                                                                                                                          aTTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATcc                                                                                                                                                                       <  2:711387/106‑1 (MQ=255)                                                                                                                                                                                                                                                          aTTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGc                                                                                                                                             <  2:224552/132‑1 (MQ=255)                                                                                                                                                                                                                                                                  cgcgAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCt                                                                                                                                           >  2:666668/1‑126 (MQ=255)                                                                                                                                                                                                                                                                  cgcgAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                >  1:404147/1‑217 (MQ=255)                                                                                                                                                                                                                                                                     gagaGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGa    >  1:233388/1‑258 (MQ=255)                                                                                                                                                                                                                                                                      agagCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCaaa                                                                                                                                       <  1:666677/126‑1 (MQ=255)                                                                                                                                                                                                                                                                      agagCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGAtattat                                            <  2:404140/217‑1 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                 TTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACC  >  CP009273/4564871‑4565390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.