New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4565134 =	46 (1.200)	4 (0.110)	4/296	NT	8.4%	pseudogene (1399/2937 nt)	yjiV	pseudogene; conserved hypothetical protein
	?	CP009273	4565298 =	44 (1.210)					pseudogene (1563/2937 nt)	yjiV	pseudogene; conserved hypothetical protein

AAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATC  >  CP009273/4565036‑4565530                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                         acctACATANGGGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCt                                                                                                                                                                                                                              <  2:262557/272‑1 (MQ=255)                        tGGCAGGAAAAAGGATTAACGCTTGATGACTGTCGCGATTTTCTCAAGGTTACGTTTGATCATTACGTTCGCGAGAGCAACTGCACACAGCNGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGTGGGCAGGATTCACAACCGTCAATGCGGc                                                                                                                                                                                                       <  1:502895/275‑1 (MQ=255)                          gctgtcgacagaaTTAACGCTGTATGACTGTCGCGATTTTCTCAAGGTTAAGTTGGGTAATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTTGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCa                                                                                                                                                                                                      <  2:107052/262‑1 (MQ=255)                          gCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTCTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCAACGTTTAACGAAGTTGCGGATGCGGGGGGCTTGATTCAAAACCTTAAATACgtc                                                                                                                                                                                                       >  2:502888/1‑271 (MQ=255)                          gCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTAACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCaa                                                                                                                                                                                                     >  1:107053/1‑275 (MQ=255)                                  aaGGATTAACGCTGGATGACGGGGGCGATTTTCTCAATGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCGGGAGGAGGAGCTGAAAAACTGGAGTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGat                                                                                                                                                                                             <  1:255193/275‑1 (MQ=255)                                                     cttgcgtGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTg                                                                                                                                                                           <  1:93009/271‑1 (MQ=255)                                                     cTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCACAGTTGCTGATGCGGGGGGCTGGATTCAAAAACGTCAATGCGGGAACTATTGGTATTATCAATACactagcc                                                                                                                                                                           >  2:175871/1‑268 (MQ=255)                                                         cgcgATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                                                                                                                                                            <  1:175874/253‑1 (MQ=255)                                                                        gttaatgtgatacATTACGGTCGGCAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAAGTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAAc                                                                                                                                                        <  2:78536/262‑1 (MQ=255)                                                                                 gATCATTACGTTCGCGAGAGCAACTTTACACAGCTGGATGATGAGCTGAAAAACTGGTTTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTAGCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGAcc                                                                                                                                              <  1:419652/275‑1 (MQ=255)                                                                                 gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTANCCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATTGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGCAAGATGCATGGGCCCAACTTACCGGAcc                                                                                                                                              <  1:486995/275‑1 (MQ=255)                                                                                 gATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                                                                                                                                                            >  1:14041/1‑229 (MQ=255)                                                                                             cgcgAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                                                                                                                                                            >  1:404147/1‑217 (MQ=255)                                                                                                gagaGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGa                                                                                                                                                >  1:233388/1‑258 (MQ=255)                                                                                                 agagCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGAtattat                                                                                                                                                                                        <  2:404140/217‑1 (MQ=255)                                                                                                    GCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGc                                                                                                                                            >  2:233383‑M1/1‑258 (MQ=255)                                                                                                                  cTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATTGTTTAGCGAAGTTGCTGATGCTggg                                                                                                                                                                                                                                  >  2:708637/1‑158 (MQ=255)                                                                                                                     gatgatGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATg                                                                                                                                                                                                           >  2:225793/1‑178 (MQ=255)                                                                                                                      atgatgAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATTGTTTAGCGAAGTTGCTGACGCTGGGGGCt                                                                                                                                                                                                                              <  1:708647/158‑1 (MQ=255)                                                                                                                         atgaTCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGc                                                                                                                                                                                                       <  1:225798/178‑1 (MQ=255)                                                                                                                                       cgaatttgaggccagcgtctgttctgattatcttcaggatcttttgattccgggttacggacgaattttgatgaaaaacggctaccaatccagtttttcagctcatcatccagctgtgtgaagttgctGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCa                                                                                                                                                                  >  1:317721‑M2/129‑201 (MQ=255)                                                                                                                                           tttgaggccagcgtctgttctgattatcttcaggatcttttgattccgggttacggacgaattttgatgaaaaacggctaccaatccagtttttcagctcatcatccagctgtgtgaagttgctGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATggg                                                                                                                                                              <  2:317715‑M2/77‑1 (MQ=255)                                                                                                                                           ttGGTAGCCGTTTTTCATCAAAATTCCTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGTGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACa                                                                                                                                                                                 >  1:469162/1‑182 (MQ=255)                                                                                                                                               tAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGTGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGc                                                                                                                                                                             <  2:469155/182‑1 (MQ=255)                                                                                                                                                                                  aaTCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGAt                                                                                                                        >  1:269842/1‑200 (MQ=255)                                                                                                                                                                                      aaaaGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCa                                                                                                                    <  2:269837/200‑1 (MQ=255)                                                                                                                                                                                       aaaGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGa                                                                                                                                                                                                                                         >  1:277271/1‑82 (MQ=255)                                                                                                                                                                                        aaGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATAAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTGTATTTACCGAAAGAGCATATGACTTTTTATTTAATCAAGGATGCCTGGATTTGCCCGGTAACCAATa                                         >  1:14327/1‑273 (MQ=255)                                                                                                                                                                                           aTCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCt                                                                                                                                                                                                                                     <  2:277266/82‑1 (MQ=255)                                                                                                                                                                                             ccTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGtttt                                                                                                            >  1:413467/1‑201 (MQ=255)                                                                                                                                                                                                 aaGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTtttatt                                                                                                        <  2:413460/201‑1 (MQ=255)                                                                                                                                                                                                     tAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCa                                                                                                                                                                  >  1:550873/1‑139 (MQ=255)                                                                                                                                                                                                      aaTCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATg                                                                                                                                                                                                           >  2:357989/1‑97 (MQ=255)                                                                                                                                                                                                         cAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATggg                                                                                                                                                              <  2:550864/139‑1 (MQ=255)                                                                                                                                                                                                          aGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGc                                                                                                                                                                                                       <  1:357995/97‑1 (MQ=255)                                                                                                                                                                                                           gAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAAt                                                                                                                                                                                                            >  1:245498/1‑91 (MQ=255)                                                                                                                                                                                                           gAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGAAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGAACGATTGCAGTACTGAAACCCGATGGAAACCGTTTTTATTTACCGAAAGAGCACATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCATGGAAACGGACTTTa                    >  2:695454/1‑275 (MQ=255)                                                                                                                                                                                                               aGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCgg                                                                                                                                                                                                        <  2:245493/91‑1 (MQ=255)                                                                                                                                                                                                                 aCGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGata                                                                                                                                                                                            >  2:6477/1‑101 (MQ=255)                                                                                                                                                                                                                 aCGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTg                                                                                                                                 >  2:246695/1‑160 (MQ=255)                                                                                                                                                                                                                     tGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGTGCTGGATTCAAAACCGTCAATGCGGCAACTATTGAtattat                                                                                                                                                                                        <  1:6477/101‑1 (MQ=255)                                                                                                                                                                                                                     tGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAAc                                                                                                                             <  1:246700/160‑1 (MQ=255)                                                                                                                                                                                                                      ggCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTAc                                                                                                                                                    >  2:220497/1‑136 (MQ=255)                                                                                                                                                                                                                          tCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGa                                                                                                                                                <  1:220502/136‑1 (MQ=255)                                                                                                                                                                                                                               tccagtttttcagctcatcatccagctgtgtgaagttgctGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAaagaa                                                                                                                                                                     >  2:675672‑M2/41‑110 (MQ=255)                                                                                                                                                                                                                                tCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAGCTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATc  <  1:695463/272‑1 (MQ=255)                                                                                                                                                                                                                                   gtttttcagctcatcatccagctgtgtgaagttgctGATGCTGGGGGCTGGATTCAAAACCGGCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCAt                                                                                                                                                                 <  1:675681‑M2/74‑1 (MQ=255)                                                                                                                                                                                                                                                      cGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCa                                                                                                                                                                                                      >  1:386505/1‑54 (MQ=255)                                                                                                                                                                                                                                                        tttAGCGAAGTTGCTGATGCTGGGGGCTCGATTCAAAACCGTCAATg                                                                                                                                                                                                           >  1:545013/1‑47 (MQ=255)                                                                                                                                                                                                                                                          tAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTa                                                                                                                                                                                                  <  2:386499/54‑1 (MQ=255)                                                                                                                                                                                                                                                           aGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGAGCATATGACTTTTTCTTTAATc                                                                        >  2:496952/1‑175 (MQ=255)                                                                                                                                                                                                                                                            gCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGc                                                                                                                                                                                                       <  2:545004/47‑1 (MQ=255)                                                                                                                                                                                                                                                               aagttgctGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGACCGAGCCTTTGACTATTTCTTTAATCACgg                                                                    <  1:496959‑M2/167‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                         AAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTGGCGCGATTTTCTCAAGGTTACGTTGGATCATTACGTTCGCGAGAGCAACTTCACACAGCTGGATGATGAGCTGAAAAACTGGATTGGTAGCCGTTTTTCATCAAAATTCGTCCGTAACCCGGAATCAAAAGATCCTGAAGATAATCAGAACAGACGCTGGCCTCAAATTCGTAATGGCAACGTATCCCATCGTTTAGCGAAGTTGCTGATGCTGGGGGCTGGATTCAAAACCGTCAATGCGGCAACTATTGATATTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATC  >  CP009273/4565036‑4565530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.