New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4598317	29 (0.750)	6 (0.160)	6/300	NT	16.7%	coding (316/447 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
	?	CP009273	= 4598396	32 (0.870)					coding (395/447 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase

TTTCCGTGGAGTGAAAAAACGTTTGCCAGCAACCAGGGCGAGCGTTATCTCAACTTTCAGTTAACGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGAC  >  CP009273/4598074‑4598585                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                             gttcaggggAGTGAAAAATCGTTTGACAGCAACCAGGCCGAGCGTTATTTCAACTTTCAGTTAACTCAAAACAGCAAAATGGCGGCGTGTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGa                                                                                                                                                                                                                                               <  2:247954/268‑1 (MQ=255)                                        gcgcggtcanccAACTGTAAGTTAACGCAAAACGGCAAAATGTCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTTTTCAAGAGTGCGGTCGATCCTGACGATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATta                                                                                                                                                                                                        <  2:258897/264‑1 (MQ=255)                                         aGCGTTATCTCAACTTTCAGTTAACGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATta                                                                                                                                                                                                        >  1:63374/1‑274 (MQ=255)                                                                aCGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTcgcg                                                                                                                                                                                 >  1:424796/1‑274 (MQ=255)                                                                                                             cttgttggaGCTACATTGTTTCATATTGCTGGCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAATATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAgg                                                                                                                                    <  1:671043/266‑1 (MQ=255)                                                                                                                     aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTACAGAGGCGACGATTCGCCGCACTTACTACCCCACCAAGGACGGTCGCGAAGACCGCATCCTCATGGGGTTTCCAATCCATATTTAAtggctgtctcg                                                                                                                                >  2:378919/1‑260 (MQ=255)                                                                                                                     aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGc                                                                                                                                                              >  2:560457/1‑240 (MQ=255)                                                                                                                         aCATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTg                                                                                                                                                          <  1:560466/240‑1 (MQ=255)                                                                                                                         aCATTGTGCAATAGTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATATGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCa                                                                                                                                                   <  1:378925/247‑1 (MQ=255)                                                                                                                                tCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGAGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATAc                                                                                                                                        >  1:121056/1‑251 (MQ=255)                                                                                                                                 cAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATCCGCCGCAATTACTACCCCACACCAGACGGTCGCGAAGACGCCAGCATCATGGCGTTGCCACTCAGTATGTAATACATGGGGAAAGAATTAAGTggtgatg                                                                                                               >  2:4957/1‑270 (MQ=255)                                                                                                                                    tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCAt                                                                                                                                                                                                                                                           >  2:634557/1‑132 (MQ=255)                                                                                                                                       tGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCAt                                                                                                                                                                                                                                                           >  1:672182/1‑129 (MQ=255)                                                                                                                                       tGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTcg                                                                                                                                                                                                                 >  2:131697/1‑171 (MQ=255)                                                                                                                                        gCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGcc                                                                                                                                                                                                                                                       <  1:634566/132‑1 (MQ=255)                                                                                                                                           gTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGcc                                                                                                                                                                                                                                                       <  2:672173/129‑1 (MQ=255)                                                                                                                                           gTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTcgccgc                                                                                                                                                                                                             <  1:131698/171‑1 (MQ=255)                                                                                                                                                  cTGACTATNAGTGTCAGNGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCca                                                                                                                                                                        <  1:484041/201‑1 (MQ=255)                                                                                                                                                      cTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcgtacagggcaatgg                                                                                                                                                                                                              >  1:193997‑M1/1‑95 (MQ=255)                                                                                                                                                          cAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcgtacagggcaatggcggc                                                                                                                                                                                                          <  2:193994‑M1/159‑69 (MQ=255)                                                                                                                                                               tCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGaa                                                                                                                                                                                                                                              >  1:714368/1‑118 (MQ=255)                                                                                                                                                                   ggATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGtt                                                                                                                                                                                                                                          <  2:714358/118‑1 (MQ=255)                                                                                                                                                                             gggCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcgtacaggg                                                                                                                                                                                                                    >  1:317963‑M1/1‑72 (MQ=255)                                                                                                                                                                             gggCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTTACTCAt                                                                   >  1:68521/1‑275 (MQ=255)                                                                                                                                                                                 gctgctGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcgtacagggcaat                                                                                                                                                                                                                <  2:317957‑M1/130‑63 (MQ=255)                                                                                                                                                                                               tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcg                                                                                                                                                                                                                           >  1:1547‑M1/1‑54 (MQ=255)                                                                                                                                                                                               tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCAt                                                                                                                                                                                                                                                           >  2:450220/1‑73 (MQ=255)                                                                                                                                                                                               tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCACTTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACCAGGTGGAATAATGAAGTGGGAATGGATTTTCTTGACTGCCGATGACACGCAGGTTACATTGGACTCGTTCACCGGCCtgctgctc                                                  >  2:212303/1‑272 (MQ=255)                                                                                                                                                                                               tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGAAGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCCGAGACGCCATCNTACTGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGGTTACCATGCACTAATTAACCGGCTTGAATCGGa                                                 >  1:649934/1‑275 (MQ=255)                                                                                                                                                                                                   cgacgaACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGgtggggtagtaattgcggcgaatcgtcgcctcgttaaagcctaaactttcgtaca                                                                                                                                                                                                                       <  2:1547‑M1/105‑56 (MQ=255)                                                                                                                                                                                                   cgacgaACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGcc                                                                                                                                                                                                                                                       <  1:450227/73‑1 (MQ=255)                                                                                                                                                                                                         aCTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGAt                                                                                                                                                                                                                    >  2:530997/1‑102 (MQ=255)                                                                                                                                                                                                             gAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTcgc                                                                                                                                                                                                                <  1:531005/102‑1 (MQ=255)                                                                                                                                                                                                                                     tGGCTGGAAGTCCGTGCTTTAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGCAGAt           >  1:583678/1‑275 (MQ=255)                                                                                                                                                                                                                                               tCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGCCTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGCCCCCTTTACCGCCTAATAtttttttttc  >  2:586776/1‑268 (MQ=255)                                                                                                                                                                                                                                                 cGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTcgc                                                                                                                                                                                                                >  2:135117/1‑66 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                             TTTCCGTGGAGTGAAAAAACGTTTGCCAGCAACCAGGGCGAGCGTTATCTCAACTTTCAGTTAACGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGAC  >  CP009273/4598074‑4598585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.