New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4598317	29 (0.750)	6 (0.160)	6/300	NT	16.7%	coding (316/447 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
	?	CP009273	= 4598396	32 (0.870)					coding (395/447 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase

ACGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAG  >  CP009273/4598137‑4598669                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  aCGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTcgcg                                                                                                                                                                                                                                                                     >  1:424796/1‑274 (MQ=255)                                              cttgttggaGCTACATTGTTTCATATTGCTGGCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAATATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAgg                                                                                                                                                                                                                        <  1:671043/266‑1 (MQ=255)                                                      aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTACAGAGGCGACGATTCGCCGCACTTACTACCCCACCAAGGACGGTCGCGAAGACCGCATCCTCATGGGGTTTCCAATCCATATTTAAtggctgtctcg                                                                                                                                                                                                                    >  2:378919/1‑260 (MQ=255)                                                      aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGc                                                                                                                                                                                                                                                  >  2:560457/1‑240 (MQ=255)                                                          aCATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTg                                                                                                                                                                                                                                              <  1:560466/240‑1 (MQ=255)                                                          aCATTGTGCAATAGTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATATGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCa                                                                                                                                                                                                                                       <  1:378925/247‑1 (MQ=255)                                                                 tCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGAGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATAc                                                                                                                                                                                                                            >  1:121056/1‑251 (MQ=255)                                                                  cAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATCCGCCGCAATTACTACCCCACACCAGACGGTCGCGAAGACGCCAGCATCATGGCGTTGCCACTCAGTATGTAATACATGGGGAAAGAATTAAGTggtgatg                                                                                                                                                                                                   >  2:4957/1‑270 (MQ=255)                                                                                   cTGACTATNAGTGTCAGNGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCca                                                                                                                                                                                                                                                            <  1:484041/201‑1 (MQ=255)                                                                                                              gggCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTTACTCAt                                                                                                                                                       >  1:68521/1‑275 (MQ=255)                                                                                                                                tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCACTTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACCAGGTGGAATAATGAAGTGGGAATGGATTTTCTTGACTGCCGATGACACGCAGGTTACATTGGACTCGTTCACCGGCCtgctgctc                                                                                                                                      >  2:212303/1‑272 (MQ=255)                                                                                                                                tGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGAAGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCCGAGACGCCATCNTACTGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGGTTACCATGCACTAATTAACCGGCTTGAATCGGa                                                                                                                                     >  1:649934/1‑275 (MQ=255)                                                                                                                                                                      tGGCTGGAAGTCCGTGCTTTAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGCAGAt                                                                                               >  1:583678/1‑275 (MQ=255)                                                                                                                                                                                tCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGCCTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGCCCCCTTTACCGCCTAATAtttttttttc                                                                                      >  2:586776/1‑268 (MQ=255)                                                                                                                                                                                               cggccgccANTGCCCTGTACGAAAGGTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATGTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCGTTACGGCTGAAGATTTTCAGGACTATCAGGCCGTTaa                                                                        <  2:63373/271‑1 (MQ=255)                                                                                                                                                                                                 gccgccATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcgatcagatgttccagcagcgcccttcccaatccctgacgctg                                                                                                                                                                                        <  2:193994‑M2/159‑92 (MQ=255)                                                                                                                                                                                                     ccATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcgatcagatgttccagcagcgcccttcccaatccctgacgctgatag                                                                                                                                                                                    >  1:193997‑M2/1‑64 (MQ=255)                                                                                                                                                                                                       aTTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcgatcagatgttccagcagc                                                                                                                                                                                                               <  2:317957‑M2/130‑69 (MQ=255)                                                                                                                                                                                                           cccTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcgatcagatgttccagcagcgccc                                                                                                                                                                                                           >  1:317963‑M2/1‑58 (MQ=255)                                                                                                                                                                                                              tGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcg                                                                                                                                                                                                                                 <  2:1547‑M2/105‑51 (MQ=255)                                                                                                                                                                                                                  cGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACcacggacttccagccatagtgtcgccacgccgcgtttttccagttcgtcgatca                                                                                                                                                                                                                             >  1:1547‑M2/1‑51 (MQ=255)                                                                                                                                                                                                                     aaGTTTAGGCTTTAACGAGGCGACGAGTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGc                                                                                                                                                                                                                                             >  1:460992/1‑86 (MQ=255)                                                                                                                                                                                                                         ttAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAAt                                                                                                                                                                                                                                         <  2:460985/86‑1 (MQ=255)                                                                                                                                                                                                                          tAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCcatcatcat                                                                                                                                                                                                                                                     >  2:399/1‑73 (MQ=255)                                                                                                                                                                                                                          tAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCcatcatcat                                                                                                                                                                                                                                                     >  2:150989/1‑73 (MQ=255)                                                                                                                                                                                                                          tAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGc                                                                                                                                                                                                                                             >  2:491994/1‑81 (MQ=255)                                                                                                                                                                                                                          tAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTACAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGAttt                                                                                             >  1:361847/1‑225 (MQ=255)                                                                                                                                                                                                                              cTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCg                                                                                                                                                                                                                                                 <  1:399/73‑1 (MQ=255)                                                                                                                                                                                                                              cTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCg                                                                                                                                                                                                                                                 <  1:150992/73‑1 (MQ=255)                                                                                                                                                                                                                              cTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAAt                                                                                                                                                                                                                                         <  1:492001/81‑1 (MQ=255)                                                                                                                                                                                                                                 tAACGAGGGGACGATTCGCCGCAATTACTACCCCCCCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGAt                                    <  1:586785/275‑1 (MQ=255)                                                                                                                                                                                                                                   aggagaaaatggttCGCCGCAATTACTACCCCACCTCGTACGGTCGCGAAGACTCCATCATCATGGCGTTGCCAATCAATATGTAATACAAGGAGGAATAATGAAGTGGGACTGGATTTTCTTTGATGACGATGAAACGCTGTTTATCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGAATACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGAt                                    <  2:583669/261‑1 (MQ=255)                                                                                                                                                                                                                                       ggCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACaa                                                                                                                                                                                                                          >  2:286032/1‑87 (MQ=255)                                                                                                                                                                                                                                       ggCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACa                                                                                                                      >  2:336682/1‑187 (MQ=255)                                                                                                                                                                                                                                        gCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTc                              >  1:322508/1‑274 (MQ=255)                                                                                                                                                                                                                                           acgaTTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTg                                                                                                                                                                                                                      <  1:286037/87‑1 (MQ=255)                                                                                                                                                                                                                                           acgaTTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGt                                                                                                                  <  1:336688/187‑1 (MQ=255)                                                                                                                                                                                                                                                          tactacCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACggg           <  2:322502/275‑1 (MQ=255)                                                                                                                                                                                                                                                                   accacGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATa                                                                                                                                                                                                                             >  2:167831/1‑56 (MQ=255)                                                                                                                                                                                                                                                                   accacGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGGTAACAAGCCACTGGGGGTGGATTATAAAAACGGCGCGATCACTTAATTACCGCTTCAGCACGGGGGGTATgcg  >  2:327600/1‑273 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  ACGCAAAACGGCAAAATGGCGGCGTTTGCGATTACGCAAGTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCGTGCTTCAAACGCTGCCGCCATTGCCCTGTACGAAAGTTTAGGCTTTAACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTTGCCAATCAGTATGTAATACAAGGTGGAATAATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGCAGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAG  >  CP009273/4598137‑4598669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.