New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 77191	63 (1.640)	4 (0.110)	4/300	NT	6.2%	coding (161/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit
	?	CP009273	= 77375	61 (1.660)					coding (1071/1092 nt)	leuB	3‑isopropylmalate dehydrogenase, NAD(+)‑dependent

CGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGTTCATACAGTCCAAAACCTTGCTCGTTCAG  >  CP009273/77115‑77632                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                  cgcCATTTCACCGCAGGCATTAATGTCTTTGGTATGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGGCCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAACCATGATTACACCCCTTCTGCAACAAAACGGGCAATAATATc                                                                                                                                                                                                                                                     >  1:37713/1‑275 (MQ=255)                                      agagatgcGTTATGATCCATGGTAGCAAAGTTGTTGCCCGCCTGACGGTCCCGGCGACCGTTGGTGCGCAGACTAGCTAACGCCTGCGGTGATGTCACTTCATGCTCCAGGTGGCGGTCGAGAGATAACAGTGGGGTTTCGTTTTCGGCTTCTTACACAACGTGAGCGTCGAACAATTTATCGTATAACGTATTAGCCATCATTACACCCCTTCTGCTACATTGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACgg                                                                                                                                                                                                                <  2:37713/268‑1 (MQ=255)                                          gtcgcccggtacgtcagccgggcaaaaccttcgctaccatggatcacaacgtctctacccagaccaaagacattaatgcctgcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTa                                                                                                                                                                                                            >  1:262260‑M2/89‑275 (MQ=255)                                                  tgacacaggggaGNGAAGGTTTGGCACGGCGGCCGTACCGGTCAACCGTGGGCGCGCAGACCATCGAACGCCTGCTGGGAGGTCACTGCATGCACCAGGGGGCGGTCGATATATAACAGTTGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATcccc                                                                                                                                                                                                     <  2:531203/263‑1 (MQ=255)                                                      ccATGGTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAACGGGAAATGAAATAGCCCATTTCATAGATATTAAGGGCGGCAGCGCCACGGGCTAAATCCCCAGTg                                                                                                                                                                                                 >  2:170700/1‑274 (MQ=255)                                                         tGGTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCgtgctggca                                                                                                                                                                                                                                            >  1:67394/1‑220 (MQ=255)                                                          ggTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTACGTTTTCGGCTTCGTACACAACGTGAGCGTCGCACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATATCAGGCAATGATATCGCCCCTTACATATGAACTAACGGCGGCAGCGACCCGGGCTAACTGCCCgttccggg                                                                                                                                                                                             >  2:596295/1‑267 (MQ=255)                                                             aGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAg                                                                                                                                                                                                                                                                   <  2:30952/201‑1 (MQ=255)                                                              gCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATc                                                                                                                                                                                                                                         >  2:35762/1‑226 (MQ=255)                                                                  aGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTa                                                                                                                                                                                                                                     <  1:35762/226‑1 (MQ=255)                                                                      aaaaccttcgctaccatggatcacaacgtctctacccagaccatcgaacgcctgcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCgg                                                                                                                                                                                                                                                                <  2:572130‑M2/135‑1 (MQ=255)                                                                          cctaccatgcctcacaacgtctctacccataccaaagacattaatgtctgcgatgaGGTTACTTCAGGCACCAGGTGGCGGCCGATACATAACAGTGGGGTTTCGATTTCGGCGTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACAAACCTTCTGCTACATAGCGGGCAATGATATCGCCCATGTCATCGATACTAACGGCGGCAGCTCCACGGGGGAATTCCACGCGCCGAATGCCTTcttctaccacg                                                                                                                                                                            >  2:218207‑M2/57‑270 (MQ=255)                                                                                     tACCGGGCGACTGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTGCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGgc                                                                                                                                                                 <  1:404576/275‑1 (MQ=255)                                                                                         gggCGACCGTGGGCGCGCAGACCAGCGAGCGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCACTGANATCTCCCATTTCATCGGTACTCACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGAGCGGTTAATGGcgcg                                                                                                                                                              >  1:511330/1‑274 (MQ=255)                                                                                                                         ctgcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCTCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTACTGCGCGGTTAATGGCGCGTTCCATTGCGCAAGCCGCATCCTCCGCATCCa                                                                                                                              >  1:10268‑M2/10‑274 (MQ=255)                                                                                                                         cTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGcgggcaaaaccttcgctaccatggatcacaacgtctctacccagac                                                                                                                                                                                                                     <  2:530068‑M2/187‑47 (MQ=255)                                                                                                                           gcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCCCGGGCTAAATCCCCGGTGCGAATGCCTTGTTCGAATGACCGGTTACTGTCGCGTTCCATGGCGCACGCCCACTCACTGGCATCCAgg                                                                                                                            >  1:153145‑M2/8‑274 (MQ=255)                                                                                                                             ggTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGcgggcaaaaccttcgctaccacggatcacaacgtctctacccagaccaaa                                                                                                                                                                                                                 >  1:530076‑M2/1‑137 (MQ=255)                                                                                                                                             gCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTGGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTa                                                                                                                                                                                 >  1:225936/1‑203 (MQ=255)                                                                                                                                              tcaaaGGGGGAGGTTGATATATGACATTGGGGTTTCGTTTTCGGCTGCGTACACAACGTTAGCGTCGAACAATTATTCGTATAACGTCTTAGCCATGATTACACCCCTTCGGCGACAGAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTACATCCCCGGTGCGAATGCCTGCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGc                                                                                                        <  2:10268/271‑1 (MQ=255)                                                                                                                                                 cAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTGGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATgc                                                                                                                                                                             <  2:225931/203‑1 (MQ=255)                                                                                                                                                           tCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGGGCGAATGCCTTCTTATAATGCGCGGTTAATGGCGCGTTCAATGTCGCAAGCCGCATCATCCGCATCCAGCCGTGAACCCAGCAGCAGTTCCAGCGaaatgctt                                                                                           >  2:628184/1‑270 (MQ=255)                                                                                                                                                                   taACGGTGGGNNTTCCGTTTCGTCCTCGTCCACAACGTGGGCGTCGACCAAGTTTTCGGATAACGTCTTAGCCATGATGACACCCCGTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACGAACGGCGGCAGCGCCACGGGCTAAAGCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAAt                                                                                   <  2:73913/275‑1 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCTTGTACAGCGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGNTAATGTCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCAAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGCATTGTGCAATCGGGt                                                                              >  1:504064/1‑274 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCTGGCAATGATATCGCCCATTTCAGCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCACCGGTGCGAATGCCTTCTTCTAATTCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGAATCCAGGCGGTCACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGtt                                                                             >  1:770/1‑275 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCCGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCCATGTCGCAAGCCGCAGCATCGGCATCCAGGCTGTAACGACACAGCACGGCCGGCGCAAGGATGTATTGAATCggg                                                                               >  2:324819/1‑273 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCg                                                                                                                                                                                               >  2:397433/1‑161 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCa                                                                                                                                  >  2:139491/1‑222 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTGAATGGCGCGTACAATGGCGCAAGCCGCACCATCGGCATCCCGGCTGAAACGCAGCAGCAGTGCAGGCGGAAGGATTGGGGCacacgcg                                                                               >  2:84033/1‑267 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGAGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGACATACAGGCTGTAACGCAGCAGCAGCGACAGCGAAAGGATTTGCGCACGCGGGt                                                                              >  1:73914/1‑274 (MQ=255)                                                                                                                                                                         tGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTCTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCGCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTACAATGGCGCAAGcc                                                                                                                                              >  1:673533/1‑210 (MQ=255)                                                                                                                                                                           gggTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGatat                                                                                                                                                                                                                                                      >  1:527752/1‑104 (MQ=255)                                                                                                                                                                             gTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGcg                                                                                                                                                                                                                                                                 >  2:464784‑M2/1‑89 (MQ=255)                                                                                                                                                                             gTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATg                                                                                                                                                                                           <  1:397440/161‑1 (MQ=255)                                                                                                                                                                             gTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCa                                                                                                                              <  1:139492/222‑1 (MQ=255)                                                                                                                                                                             gTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAAAAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGaa                                                                                                 <  1:67679/251‑1 (MQ=255)                                                                                                                                                                               ttCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGcc                                                                                                                                                                                                                                                  <  2:527744/104‑1 (MQ=255)                                                                                                                                                                                tCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGAAATCGGGTTGGCGATg                                                                      >  1:95209/1‑275 (MQ=255)                                                                                                                                                                                      tCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGACTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTg                                                                >  1:691410/1‑275 (MQ=255)                                                                                                                                                                                             cGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGGGCGAATGCGTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCACCATCGGCATCCAGGCCATGACGGAGCCGCAATGCCCGCGAAAGGACTTGTCAAATAGGGTTGGCGATGTGTTTGCCTGGGa                                                         >  2:668838/1‑275 (MQ=255)                                                                                                                                                                                                    aaCGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCCTCGGTACTAACGGCGGCAgcg                                                                                                                                                                                                                      >  1:334444/1‑111 (MQ=255)                                                                                                                                                                                                      cGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGc                                                                                                                                                                                                                                                   >  2:581757/1‑80 (MQ=255)                                                                                                                                                                                                      cGTGAGCGGCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAGTGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTg                                                >  1:638275/1‑275 (MQ=255)                                                                                                                                                                                                        ttaGCGTCTATCAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCACTGATATCGCCCATTTCATCGCTACTAACGGCGGCAGCGCCAc                                                                                                                                                                                                                  <  2:334438/109‑1 (MQ=255)                                                                                                                                                                                                         gAGCGTCCAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATCTCATCGGTACTAACGGCCGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCTCGGTTAATGACTCGt                                                                                                                                                             >  2:659408/1‑163 (MQ=255)                                                                                                                                                                                                          aGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCAt                                                                                                                                                                                                                                               <  1:581766/80‑1 (MQ=255)                                                                                                                                                                                                           gCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGccc                                                                                                                                                                                                                                                 >  1:307118/1‑77 (MQ=255)                                                                                                                                                                                                             gTCGNACAATTTTTCGGATAACGTCTTAGCCATGATTACGCCCCTGCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCaa                                                                                                                                                         <  1:659417/163‑1 (MQ=255)                                                                                                                                                                                                              tCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGa                                                         >  1:403618/1‑258 (MQ=255)                                                                                                                                                                                                               cGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCAttt                                                                                                                                                                                                                                             <  2:307112/77‑1 (MQ=255)                                                                                                                                                                                                                  aCAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTATTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGCGccgcccg                                    <  1:628193/275‑1 (MQ=255)                                                                                                                                                                                                                     aTTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCTTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGccgcccg                                    <  1:568377/272‑1 (MQ=255)                                                                                                                                                                                                                     aTTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTTATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGccgcccg                                    <  1:422637/272‑1 (MQ=255)                                                                                                                                                                                                                              ataagggacaggCCATGATTCCCCCCCTTCTGCTACAGAGCGGGCAATGATACCGCCCATTTCATCGGTACTAACTGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAAGGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGTTCATa                          <  2:310188/262‑1 (MQ=255)                                                                                                                                                                                                                               taACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCg                                                                         <  1:143217/225‑1 (MQ=255)                                                                                                                                                                                                                                             tGATTACACCCCTTCTGCTACATAGcgggcaaaaccttcgctaccatggatcacaacgtctctacccaga                                                                                                                                                                                                                      <  1:640394‑M2/70‑46 (MQ=255)                                                                                                                                                                                                                                                ttACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGTTCATACAGTCCAAAACCTTGCTCGt      <  1:144267/275‑1 (MQ=255)                                                                                                                                                                                                                                                 tACACCCCTTCTGCTACATAGcgggcaaaaccttcgctaccatggatcacaacgtctctacccagaccaa                                                                                                                                                                                                                  >  2:640385‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                                    acCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTa                                                                                                                                                                                 >  1:616592/1‑100 (MQ=255)                                                                                                                                                                                                                                                    acCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCCGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGTTCATACAGTCCAAAACCTTGccatttcat  >  2:504408/1‑267 (MQ=255)                                                                                                                                                                                                                                                    acCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGtt                              >  1:310194/1‑247 (MQ=255)                                                                                                                                                                                                                                                        cTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATgc                                                                                                                                                                             <  2:616583/100‑1 (MQ=255)                                                                                                                                                                                                                                                         ttCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGaa                                                                                                                                                                                             >  1:406107/1‑83 (MQ=255)                                                                                                                                                                                                                                                         ttCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATgg                                                                                                                                                                  >  1:52178/1‑110 (MQ=255)                                                                                                                                                                                                                                                         ttCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGc                                                                                                                                            >  1:11833/1‑132 (MQ=255)                                                                                                                                                                                                                                                          tCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGaa                                                                                                                                                                                             >  2:272089/1‑82 (MQ=255)                                                                                                                                                                                                                                                           cTGCTACATAGCGGGCAATGATATCGCCTATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGaa                                                                                                                                                                                             >  2:27149/1‑81 (MQ=255)                                                                                                                                                                                                                                                             gCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGcc                                                                                                                                                                                         <  2:406100/83‑1 (MQ=255)                                                                                                                                                                                                                                                             gCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGcgcg                                                                                                                                                              <  2:52178/110‑1 (MQ=255)                                                                                                                                                                                                                                                             gCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGcatca                                                                                                                                        <  2:11833/132‑1 (MQ=255)                                                                                                                                                                                                                                                              cTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGcc                                                                                                                                                                                         <  1:272094/82‑1 (MQ=255)                                                                                                                                                                                                                                                               tACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGcc                                                                                                                                                                                         <  1:27149/81‑1 (MQ=255)                                                                                                                                                                                                                                                                  aTAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTg                                                                                                                                                                                                 >  2:39796/1‑70 (MQ=255)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                  CGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGTTTTGCCCGGCTGACGTACCGGGCGACCGTGGGCGCGCAGACCATCGAACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGGCTGTAACGCAGCAGCAGTGCCAGCGAAAGGATTTGTGCAATCGGGTTGGCGATGTTTTTGCCTGCGATATCTGGTGCCGAGCCGCCCGCCGGTTCATACAGTCCAAAACCTTGCTCGTTCAG  >  CP009273/77115‑77632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.