New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 113555	57 (1.480)	6 (0.170)	5/296	NT	10.3%	coding (32/1386 nt)	hofB	T2SE secretion family protein; P‑loop ATPase superfamily protein
	?	CP009273	= 113694	51 (1.410)					coding (343/441 nt)	ppdD	putative prepilin peptidase‑dependent pilin

TCCAGCAGGTGATCTCAATACGTTTGGTGGTAGCGAAATGCAATGCGTCCAGTAGCTCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTGCGGCTTTGCGCAGGTAGTTTTGATAAGCGGG  >  CP009273/113424‑113955                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                      tCCAGCAGGTGATCTCAATACGTTTGGTGGTAGCGAAATGCAATGCGTCCAGTAGCTCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCCTTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCAAGCCGGTGACGCCGTTtgcg                                                                                                                                                                                                                                                                   <  1:580987‑M2/275‑5 (MQ=255) accgtcaagggatctcaatgcTTTTGGTGGTAGCGAAATGCAATGCGTCACGTAGCGCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcg                                                                                                                                                                                                                                                                   >  2:284199‑M2/11‑271 (MQ=255)              atcAATACGTGTGGTGTGAGCGAAATGCAATGCGTCCAGTAGCTCATGCGAAAGTGCATCGACTACCGAAACATGAACCACCTCTGCGCTGGCATCCAGCAAGACGCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCATTTGCGCGTCCAGCCGGTGAGGCCGTTTGCGTTATCCCAACCCg                                                                                                                                                                                                                                                      <  2:236091/274‑1 (MQ=255)                  agaCGTTTGGTGGTAGCGAAATGCAATGCTTCCAGTAGCTCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATNCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTCTCGCCGTTTGCGTGATCCCAACCCGgtgt                                                                                                                                                                                                                                                  <  1:493358/273‑1 (MQ=255)                                aGCGAAATGCAATGCGTCCAGTAGCTCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTa                                                                                                                                                                                                                                    >  1:230654/1‑275 (MQ=255)                                                       agaaaagacagggTGCATCGACGCCCCCAACATGACCCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCg                                                                                                                                                                                                             <  2:681470/264‑1 (MQ=255)                                                                     gCATCGACTACCGCAACAGGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTTGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAANCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGAcaccac                                                                                                                                                                                               <  1:617417/275‑1 (MQ=255)                                                                      cATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTGGAATATTGCAGTTGCGCGNCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGAcaccac                                                                                                                                                                                               >  1:525781/1‑274 (MQ=255)                                                                       aTCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGATTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACACCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGCCTTTCTTGCCCGGTCAGCGACACCACg                                                                                                                                                                                              >  1:689022/1‑274 (MQ=255)                                                                             tACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCCACCCGGTGTCATGACGACGCTTAGCCCATTGAGCCTTTCTTg                                                                                                                                                                                                                 >  1:86987/1‑249 (MQ=255)                                                                             tACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTAGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGAcacctgtccctta                                                                                                                                                                                        >  1:681479/1‑265 (MQ=255)                                                                                                         gCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATTGCTGAAACAAAGCGggt                                                                                                                                                           >  1:147211/1‑275 (MQ=255)                                                                                                          cATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCCACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCGTGGCCACACTCATGTCTGAAACATATCGggtc                                                                                                                                                          >  2:706521/1‑274 (MQ=255)                                                                                                                         cATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCTGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGATCAGCTCCACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTTGTAGgagacagc                                                                                                                                           >  1:278285/1‑271 (MQ=255)                                                                                                                         cATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTg                                                                                                                                                                        >  2:53334/1‑246 (MQ=255)                                                                                                                           tGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCCTGGCTGAAACAAAGCGGGGGGTGGgcggcgcgtgga                                                                                                                                          >  2:249181/1‑268 (MQ=255)                                                                                                                             aTAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAAc                                                                                                                                                                    <  1:53334/246‑1 (MQ=255)                                                                                                                                 cGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGtt                                                                                                                                                                                                                                                                       >  2:79543/1‑143 (MQ=255)                                                                                                                                     gACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcg                                                                                                                                                                                                                                                                   >  1:79544‑M2/1‑139 (MQ=255)                                                                                                                                                gTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCATTGCGCTGTCACTTTGCATATTGCAGTTGCGCTCCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggctgccaggcaagaggtggtgcatgttccggtagtcgaggcaccttcgcatgagctactggccgccttgacttgcgctaccacaaaacgaattgggatcaccggcgggacgcgccaagacgcg                                                                                                                     <  2:121779‑M2/274‑147 (MQ=255)                                                                                                                                                gTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggattcccgcgacgaggtggttcatgtttcggtagtcgctgcaccttcgcctgagctactggactcattgcatttcgctacaaccccacttatttagatcacctactggacgcgccaacccccg                                                                                                                     <  1:48538‑M2/274‑147 (MQ=255)                                                                                                                                                  gAGCTGTGGAATATTCATCGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACCTAGCGGGTGGTGGTAGGCGAGGGAATGCCCTTGATGCCaatgtaaccg                                                                                                                   >  1:229820/1‑265 (MQ=255)                                                                                                                                                      tgtgGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggatgccagcgaagaggtggttcatgttgc                                                                                                                                                                                                                   <  1:591389‑M2/174‑53 (MQ=255)                                                                                                                                                          gAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggatgccagcgaagaggtggttcatgttgcggta                                                                                                                                                                                                               >  2:591380‑M2/1‑118 (MQ=255)                                                                                                                                                           aaTATTCTTTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTa                                                                                                            <  1:249186/272‑1 (MQ=255)                                                                                                                                                                 cATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCNCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACt                                                                                                                                                                                <  1:610273/198‑1 (MQ=255)                                                                                                                                                                  aTTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGcc                                                                                                                                                                                                               >  1:50843/1‑166 (MQ=255)                                                                                                                                                                  aTTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTAAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACAGTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATg                                                                                                  >  1:674198/1‑275 (MQ=255)                                                                                                                                                                    tGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCg                                                                                                                                                >  2:133014/1‑227 (MQ=255)                                                                                                                                                                      ccGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGt                                                                                                                                                                                                           <  2:50843/166‑1 (MQ=255)                                                                                                                                                                        gCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAggg                                                                                                                                            <  1:133015/227‑1 (MQ=255)                                                                                                                                                                                gTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggatgccagcgaagaggtggttcatgttgcggtagtcgatgcaccttcgcatgagctactggacgcattgcatttcgctaccaccaaacgtattgagatcacctgctggacgcgccaacaaatggaaggtcacaccagtcgcacccaacagacaagt                                                                                    <  2:184379‑M2/275‑180 (MQ=255)                                                                                                                                                                                   ggCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCAt                                                                                                                                                                                                                              >  2:212622/1‑134 (MQ=255)                                                                                                                                                                                      gTCATCAAAGTGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGc                                                                                                                                                                                                                                       >  1:713540/1‑122 (MQ=255)                                                                                                                                                                                      gTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTt                                                                                                                                                                                                                                                                      <  1:378996‑M2/91‑2 (MQ=255)                                                                                                                                                                                      gTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCAt                                                                                                                                                                                                                              >  1:594041/1‑131 (MQ=255)                                                                                                                                                                                       tcatcaAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTgag                                                                                                                                                                                                                          <  1:212626/134‑1 (MQ=255)                                                                                                                                                                                          tcaAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTtgcgt                                                                                                                                                                                                                                                                  >  2:378990‑M2/1‑86 (MQ=255)                                                                                                                                                                                          tcaAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAg                                                                                                                                                                                                                                   <  2:713530/122‑1 (MQ=255)                                                                                                                                                                                          tcaAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTgag                                                                                                                                                                                                                          <  2:594032/131‑1 (MQ=255)                                                                                                                                                                                                   attccATCTTCGCGGTCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCTGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGcggtacggta                                                                 <  1:124675/271‑1 (MQ=255)                                                                                                                                                                                                   aaGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                                                                                               >  2:335434/1‑165 (MQ=255)                                                                                                                                                                                                    aGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGcggtacggta                                                                 <  1:59449/274‑1 (MQ=255)                                                                                                                                                                                                       cATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATgg                                                                                                                                                                           <  1:335440/165‑1 (MQ=255)                                                                                                                                                                                                        aTCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCa                                                                                                                                                                                                                                                >  2:455106/1‑95 (MQ=255)                                                                                                                                                                                                        aTCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGGCCAGCCGGTGACGCCGTTtgcgttatcatggagtcttgctggatgccagcgaagaggtggttcatgttgcggtagtcgatgcaccttcgcatgagctactggacgcattgcatttcgctaccaccaaacgtattgagatcacctgctggacgcgccaacaaatggaaggtcacgccagtcgcacacaacagacattgcccgtagctgttcaggagaagcat                                                            >  1:121780‑M2/1‑72 (MQ=255)                                                                                                                                                                                                          cTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCACGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGGGGGCGGCGAGGGAATGCCATTGCTGCAACCGTCGCAGGTATCTAATCGACCAAGTTCAAGAGCGCACACCTCACAGGaggtacggggagcaggc                                                          >  2:124674/1‑266 (MQ=255)                                                                                                                                                                                                          attCGAACGCTTGCNCCACTGCGTTGTCACTTTTAATTTTGCCGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGcaca                                                          <  2:525774/274‑1 (MQ=255)                                                                                                                                                                                                            tCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATgac                                                                                                                                                                                                                                            <  1:455113/95‑1 (MQ=255)                                                                                                                                                                                                                            aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGac                                                                                                                                                                                                    >  1:576916/1‑119 (MQ=255)                                                                                                                                                                                                                                gcTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGAcacca                                                                                                                                                                                                <  2:576907/119‑1 (MQ=255)                                                                                                                                                                                                                                  tGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATg                                                                                                                                                                            >  2:46975/1‑137 (MQ=255)                                                                                                                                                                                                                                   gtcctgttGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATCGCGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTg                                 <  2:674189/269‑1 (MQ=255)                                                                                                                                                                                                                                      aCTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTg                                                                                                                                                                        <  1:46975/137‑1 (MQ=255)                                                                                                                                                                                                                                            aaTATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGGCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGGGAGTGCGGCTTGgc                        >  1:289908/1‑275 (MQ=255)                                                                                                                                                                                                                                              tatTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGt                                                                                                 >  1:375692/1‑200 (MQ=255)                                                                                                                                                                                                                                              tatTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGCGGGCGGCTTTgcgc                      >  1:81974/1‑275 (MQ=255)                                                                                                                                                                                                                                                 tGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGNGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGTCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTGCGGCTTTGCGCAgg                   >  1:608164/1‑275 (MQ=255)                                                                                                                                                                                                                                                  gCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCa                                                                                             <  2:375686/200‑1 (MQ=255)                                                                                                                                                                                                                                                      ttGCGCGTCCAGCCGGTGACGCCGTTTGCTTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACCCTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGAGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCAAgcgcgc                                                                                       >  1:722181/1‑202 (MQ=255)                                                                                                                                                                                                                                                             tCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGCCTTTCTGGCCCGGTCAGCGACACCACGCGCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAGTGCCATGGCTGCCACCGTCGCAGGGAGGTAGTCCACCCTGTACAAGCGGGCACAACTATAAGGCGGACCGGTCAGGCACACAGGAGTGTAGCGTGGCAGGGCGTTCGACTTGGCGCGCGTGNGTTTGATa        >  2:262191/1‑274 (MQ=255)                                                                                                                                                                                                                                                                  ccGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGATGCTTAGCCCATTGATACTTTCTTGCCCGGTCACCGACACCACGCCCTTTGCCACACTCAGAGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCAACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTGCGGCTTTGCGCAGGTAGTTTTGATAAGCggg  <  1:589406/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  caggagACGCCGTTTGCGTTCGCCCACCCCGGTGTCATGAGGACGCTTCGCCCATTGGGACTTGCTTGCCCGGTCAGCGACACCACGCCCTTGGCCACACTCATGGCTGAAACATAGCGGGGGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTGCGGCTTTGCGCAGGTAGTTTTGATAAGCggg  <  2:230649/270‑1 (MQ=255)                                                                                                                                                                                                                                                                            cGTTTGCGTTATCCCAACCCGGTGTCATGACGACGc                                                                                                                                                                                                                                       >  2:332858/1‑36 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                      TCCAGCAGGTGATCTCAATACGTTTGGTGGTAGCGAAATGCAATGCGTCCAGTAGCTCATGCGAAGGTGCATCGACTACCGCAACATGAACCACCTCTTCGCTGGCATCCAGCAAGACTCCATGATAACGCAGACACAGGGCAGTGAGCTGTGGAATATTCATTGCCGCTCCTTAGTTGGCGTCATCAAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGCGGTACGGTAAGGCACAAAGGTTTGTAGCATGTCGGTGAGTGCGGCTTTGCGCAGGTAGTTTTGATAAGCGGG  >  CP009273/113424‑113955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.