New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	256752 =	29 (0.750)	8 (0.220)	4/292	NT	24.6%	coding (654/1104 nt)	proB	gamma‑glutamate kinase
	?	CP009273	257524 =	22 (0.620)					coding (311/1254 nt)	proA	gamma‑glutamylphosphate reductase

CGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGATAATCCTGACCGTGCGCTGGTCAGTGAAATGCTGCGTATGGATAAAT  >  CP009273/257263‑257790                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                           cgcAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGcgtcgt                                                                                                                                                                                                                                                               >  1:218905/1‑275 (MQ=255) cgcAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGAGGCCTGCGTCTTGAGcgtcgt                                                                                                                                                                                                                                                               >  1:67954/1‑275 (MQ=255)                gcgAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGACCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCACGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGGGCAACCTCGCCGAACCGGTGGGGCAGGTAATCGAGGGCGGGGGACTGGAGAGCGGCGTGCGGCCGGGGCGGCGGCGCTGACCGCCgggg                                                                                                                                                                                                                                                >  2:629314/1‑275 (MQ=255)                         aTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTATGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGc                                                                                                                                                                                                                                       <  1:629323/275‑1 (MQ=255)                             ggTGCAGGAAAAAAGCGCCGATGAACTGGAAGCAACACGAGAAAGCATCGTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGGGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGt                                                                                                                                                                                                                                     <  2:218900/272‑1 (MQ=255)                                           cgttccagaatggcggcatttgccccttcatctaccgtgatttcacccgccggcggcgcaccgaaaatccagcgtttacagttttcaagcggagtcgcctgggcatggaacagcgtaccgactgaaatgccttccatcacatcaccaataacgcccggcttgctgcccgcggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAgcgcgc                                                                                                                                                                                                                     <  1:674945‑M2/56‑1 (MQ=255)                                                                            tcCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGAAGGTAATCGATGGCGGCGAACTGGACAGCGGCCTGAGTCTTGAGCGGCGTCGCGTACCGCTGGGGGTTAt                                                                                                                                                                                                                                           >  1:406978/1‑220 (MQ=255)                                                                                              cggATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCACACGGCTGAAAGGCATTGCCGACGACGTACGTCAGGTGTGCAACCTCGCCGATCCGGAGGAGCAGGTAATCTATGGCGGGGTACTGGCAAGCGGCCTGCGTCTTGAGCGTACTCGCGTa                                                                                                                                                                                                                                                         >  2:361345/2‑188 (MQ=255)                                                                                                  tGTTGCTGAGCCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGc                                                                                                                                                                                                                                                     <  1:361351/188‑1 (MQ=255)                                                                                                                            ttAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACgggt                                                                                                                                    >  1:45963/1‑275 (MQ=255)                                                                                                                                                                ccGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGt                                                                                                                                                                                                                                     <  1:238951/142‑1 (MQ=255)                                                                                                                                                                                                      gtgtGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCATGCGTCTTACCGGCGTGTGGCGTGc                                                           >  1:164571/1‑274 (MQ=255)                                                                                                                                                                                                           cAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACACCGCCCTGCGTCTTGAGCGGCGTCGCGTACCGCTGGGGGTTATTGGCGTCATTTATGAAGCCCGCCCGACCGTGTCGTTTGTTGTCGCTCGGCAGTGCTCTAAAACCGAGAATGCGGAGATCCTGCGCGGTCGCAAAGAAACGTCTCAAAATAACGCTGCCCACGTGGGGGTGACTCAGGAACGCCTGAAATCTTGCGGCTTAGCGGTGGGTGGCGttgaggggt                                                     >  2:7605/1‑267 (MQ=255)                                                                                                                                                                                                               cgcGCCGGTCCGGTGGGGCAGGTGATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGa                                                 <  1:210523/273‑1 (MQ=255)                                                                                                                                                                                                                 ccgcggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGt                                                                                                                                                                                                             >  1:452332‑M2/54‑117 (MQ=255)                                                                                                                                                                                                                 ccgcggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGt                                                                                                                                                                                                             >  1:630211‑M2/54‑117 (MQ=255)                                                                                                                                                                                                                 ccgcggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAAc                                                                                                                                        >  1:648624‑M2/54‑186 (MQ=255)                                                                                                                                                                                                                 cGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCg                                                                                                                                                                                                                                                                            >  1:604303/1‑54 (MQ=255)                                                                                                                                                                                                                   ccGATCCGGTGGGGCAGGTAATCGATTGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTCATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCACAGAAACGTGTCGCACTAACGCCTCAACGGTTGCGGTGATTCAGGACGCCCTGAAATCCCACGGCTGACCGGCGGGTGGCGTGCAAGGGAATGACaaa                                             >  2:599877/1‑274 (MQ=255)                                                                                                                                                                                                                     gggaataatggtgtcgatacccgcacggcaagctacgtcagcggccttcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTCATCCTGCGCGGTGGCAAAGAAACgtgt                                                                                                                                    <  1:426231‑M2/137‑1 (MQ=255)                                                                                                                                                                                                                     ggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACg                                                                                                                                                                                                         <  2:452325‑M2/68‑1 (MQ=255)                                                                                                                                                                                                                     ggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACg                                                                                                                                                                                                         <  2:630202‑M2/68‑1 (MQ=255)                                                                                                                                                                                                                     ggcaataatggtgtcgatacccgcacggcaagccacgtcagcggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACgtgt                                                                                                                                    <  2:648615‑M2/137‑1 (MQ=255)                                                                                                                                                                                                                     gATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCtt                                                                                                                                                                                                                                                                        <  2:604294/54‑1 (MQ=255)                                                                                                                                                                                                                        ccGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCgtcgtc                                                                                                                                                                                                                                                              >  1:53285/1‑61 (MQ=255)                                                                                                                                                                                                                            tGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGt                                                                                                                                                                                                                                                          <  2:53285/61‑1 (MQ=255)                                                                                                                                                                                                                                    gTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGATAATCCTGACCGTGCGCGGGt                            >  1:39122/1‑275 (MQ=255)                                                                                                                                                                                                                                             ggcggcGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCGGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAAc                                                                                                                                                                            >  1:441176/1‑122 (MQ=255)                                                                                                                                                                                                                                              gcggcgTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTAt                                                                                                                                                                                                                                           >  2:559149/1‑58 (MQ=255)                                                                                                                                                                                                                                              gcggcgTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTg                                                                                                                                                                                                                                         >  2:531205/1‑60 (MQ=255)                                                                                                                                                                                                                                                  cgTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTCCCGCTGGGGGTTATTGGc                                                                                                                                                                                                                                       <  1:559158/58‑1 (MQ=255)                                                                                                                                                                                                                                                  cgTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGt                                                                                                                                                                                                                                     <  1:531213/60‑1 (MQ=255)                                                                                                                                                                                                                                                      cTGGACAGCGGCCTTCGTCTTTGGCTTCGTCTCGTACCGGTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGATAATCCTGACCGTGCGCTGGTCAGTGAAATGCTGCGTa           <  1:302530/274‑1 (MQ=255)                                                                                                                                                                                                                                                           cagaggcctgnTTGTTGAGCGTCGGCGTGTTCCGCTGTGGGTTATTGGCGTGATTTATGTAGCGCGCCCGAACGTGACGGTTGATGTCGCGTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGATAATCCTGACCGTGCGCTGGTCAGTGAAATGCTGCGTATGGAt      <  2:67953‑M2/263‑1 (MQ=255)                                                                                                                                                                                                                                                              cggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTAt                                                                                                                                                                                                                                           >  1:103414‑M2/9‑42 (MQ=255)                                                                                                                                                                                                                                                              cggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAGCGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGGGGTGATCCTGCGCGGTGGCCAAGAAACGTGTCGCACTACCGCTGCAACGGTGGCGGTGATGCCTGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTCGCGGGGAGGCGATTGGTAATGATGGCCGTTGGCTTGTCCGAGAAAAGCGTAGTAGGGataagt  >  2:302524‑M2/9‑273 (MQ=255)                                                                                                                                                                                                                                                              cggcctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGtt                                                                                                                                                                                                      >  1:292830‑M2/9‑79 (MQ=255)                                                                                                                                                                                                                                                                gcctgcGTCTTGAGCGTCGTCGCGGACCACGGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGtcgcttc                                                                                                                                                                                           >  1:495219‑M2/7‑88 (MQ=255)                                                                                                                                                                                                                                                                  ctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGc                                                                                                                                                                                                                                       <  2:103413‑M2/38‑1 (MQ=255)                                                                                                                                                                                                                                                                  ctgcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATg                                                                                                                                                                                                  <  2:292824‑M2/75‑1 (MQ=255)                                                                                                                                                                                                                                                                  ctgcGTCGTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACCCTGCAGCGGTGGCTGTGATTCAGGACGcc                                                                                             <  1:490974‑M2/176‑1 (MQ=255)                                                                                                                                                                                                                                                                    gcGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCtg                                                                                                                                                                                       <  2:495212‑M2/86‑1 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                           CGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACTGACGCCCGCACGGCTGAAAGGCATTGCCGACGATGTACGTCAGGTGTGCAACCTCGCCGATCCGGTGGGGCAGGTAATCGATGGCGGCGTACTGGACAGCGGCCTGCGTCTTGAGCGTCGTCGCGTACCGCTGGGGGTTATTGGCGTGATTTATGAAGCGCGCCCGAACGTGACGGTTGATGTCGCTTCGCTGTGCCTGAAAACCGGTAATGCGGTGATCCTGCGCGGTGGCAAAGAAACGTGTCGCACTAACGCTGCAACGGTGGCGGTGATTCAGGACGCCCTGAAATCCTGCGGCTTACCGGCGGGTGCCGTGCAGGCGATTGATAATCCTGACCGTGCGCTGGTCAGTGAAATGCTGCGTATGGATAAAT  >  CP009273/257263‑257790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.