New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 472791	39 (1.010)	5 (0.140)	5/300	NT	12.9%	coding (1283/1551 nt)	ylaB	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
	?	CP009273	= 472983	30 (0.820)					coding (1091/1551 nt)	ylaB	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase

CGCATCAACGAAAGATTTATCGATCTTCAGAATGTCGACATCCAGATCCTGTAAATAACTTAAACTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTAAGGAGACAATCGGCTGATAGTGCA  >  CP009273/472721‑473217                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           cgcATCAACTAAAGATTTATCTATCTTCAGAATGTCGACATCCAGATCCTGTAAATAACTTAAACTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCATCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGa                                                                                                                                                                                                                                <  1:172756/275‑1 (MQ=255)                        tCTTCAGAATGTCGACATCCAGATCCTGTAAATAACTTAAACTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGTATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGCGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGCGCACGGGGGATTCAAGATAGATAGAAAAATGCAGATGTGGATGc                                                                                                                                                                                                         >  1:448668/1‑275 (MQ=255)                                        aTCCAGATCCTGTAAATAACTTAAACTTGAATACCCCGTACCAAAATCATCAANATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCTAGGTGAGCACGGCGGATTCAAGATTGAt                                                                                                                                                                                                                               <  1:499705/237‑1 (MQ=255)                                              aTCCTTTAAATAATTTAAACTTTAATACCCCGTACCAAATTAAGCAAGATAAATTTCATGGCCCGCTTCCAGGTAGCGAGANATTATCGGNGCGCTGGTTTTCTGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATTCTGCTGTAGATGCTGACGCCGCCAGTCGCCCata                                                                                                                                                                                    <  1:484624/274‑1 (MQ=255)                                                           cTTAAACTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTCTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGct                                                                                                                                                                      >  1:588516/1‑275 (MQ=255)                                                              aaaCTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGcttct                                                                                                                                                                   >  1:398539/1‑275 (MQ=255)                                                                        aCCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGt                                                                                                                                                         <  1:77920/275‑1 (MQ=255)                                                                                            aGTTAATTGTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCTCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGCGGTattcaagtttaagttatttacaggatctggatgtcgacattctgaaga                                                                                                                                                                                            >  1:71497‑M2/1‑172 (MQ=255)                                                                                                       aTGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCGGGTTTTCGGATCGGCAAACTCGCGCTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAAACTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATGGATCGCAAGATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGATTCTTATATTCACTAGCGTCAATGGCTCACAAAGACCCGTTTGCt                                                                                                                          >  1:448943/1‑275 (MQ=255)                                                                                                                   ccGGTTGCGAGAAATTATCGGGGCTCTTGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGTGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGTGATTTTTTCCGTGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGaa                                                                                                              <  1:674974/275‑1 (MQ=255)                                                                                                                                      ggggggGTGGTTTTAGGATCTGTAATGACGCTTTCAGTGGTTTCANGGGCGGT‑TGTGTTGGGATTTATCTGATAGTGATTGATCATGTGACGAAGCAATTGCGGGATTTTTTACGGGGTGAGCACGGGGGATTCAAGATTGATCGCAATATGCTGCTGTGGATCCTGACGCAGCCAGTCGCCCATATCTTCCAAGGCACGTCTTATAATCAGTAGCGTAAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGAca                                                                                            <  2:448936/274‑1 (MQ=255)                                                                                                                                      ggctcgcTGTTTTTCGTATTGTCAAACTCGAGTTCAGTGGTTTCAAGCGCGATCTTT‑CTGGGAGTCACCTGATAGTGAGTGATCATGTCACGCAGCAATTGCGGGATGTGTTCCGAGGTGAGCACTGGGGATTCAAGATTGATCGAACTATGCTGCTGTGTATGCTGACGCAGCCAGTCGGCCATATCTTCAAAGACGCTTCTTATCATCAGTAGCGTCAATGGCTCAGAACGGCGCGTTTGCTGTCCCAGCGGAATAAAACGATCTGGTGAcaa                                                                                           <  2:180237/271‑1 (MQ=255)                                                                                                                                        ggCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGAATGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCGCATATCTTCAAAg                                                                                                                                                                           >  1:698701/1‑193 (MQ=255)                                                                                                                                            cTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGAcaaccaac                                                                                      <  1:409493/274‑1 (MQ=255)                                                                                                                                                  ttCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGCTTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCTTTTGCTGTGCCAGCGGAATAAAAANATCTTTTTACAACCAACTAcgttc                                                                               >  2:409486/1‑271 (MQ=255)                                                                                                                                                       aTCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGc                                                                                                                                                                                         >  2:443767/1‑164 (MQ=255)                                                                                                                                                         cGGCAAACTCGCTCTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTTCTCATGTCACGCAGCAATTGCGGGATTGTTTCCGCGGTGAGCACGGGGGattcaagtttaagttatttacagcatctggatgtcgactgtctgaagatcgataaatcttttgttgatgcgctggactataaaaat                                                                                                                                                      <  2:392461‑M2/197‑87 (MQ=255)                                                                                                                                                           gCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCat                                                                                                                                                                                     <  1:443774/164‑1 (MQ=255)                                                                                                                                                             aaaCTCGCGTTCAGTGGGTACAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGattcaagtttaagttatttacaggatctggatgtcgacattctgaagatcgataaatctttcgttgatgcgctggaatataaaaatgtca                                                                                                                                                  >  1:392467‑M2/1‑107 (MQ=255)                                                                                                                                                                               ttCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCCCCAgcggcgca                                                   >  2:102456/1‑267 (MQ=255)                                                                                                                                                                                         aTCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTg                                                                                                                                                                                                       >  2:617441/1‑116 (MQ=255)                                                                                                                                                                                             gt‑ctgGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGc                                                                                                                                                                                                   <  1:617450/116‑1 (MQ=255)                                                                                                                                                                                                 tgGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGTCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCa                                 <  1:621660/275‑1 (MQ=255)                                                                                                                                                                                                         cggtGATAGNGGTTGATCATGTCACGCAGCAAGTGCGGGATTTTTTCCGGGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTATGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTaa                         <  2:264001/272‑1 (MQ=255)                                                                                                                                                                                                              aTAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAg                                                                                                                                                                           >  1:173916/1‑124 (MQ=255)                                                                                                                                                                                                                  tgattgatCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc                                                                                                                                                                       <  2:173913/124‑1 (MQ=255)                                                                                                                                                                                                                    attgatCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAatat                                                                                                                                                                                                                       >  2:242947/1‑74 (MQ=255)                                                                                                                                                                                                                    attgatCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTTTCTGCgg                                                                      >  1:199344/1‑219 (MQ=255)                                                                                                                                                                                                                        gtaaTGTCACGCAGGAATTGCGGGAGTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAg                                                                  <  2:199341/216‑1 (MQ=255)                                                                                                                                                                                                                        atCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATAtgctg                                                                                                                                                                                                                   <  1:242952/74‑1 (MQ=255)                                                                                                                                                                                                                            tGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGattc                                                                                                                                                                                                                                        <  2:53430‑M2/49‑5 (MQ=255)                                                                                                                                                                                                                             gTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTCTCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTAAGGAGACAACCGGCTGATAg      >  1:368177/1‑274 (MQ=255)                                                                                                                                                                                                                                aCGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGa                                                                                                                                                                                                                                    <  1:53430/49‑1 (MQ=255)                                                                                                                                                                                                                                aCGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAgcgcg                                                              >  2:34206/1‑215 (MQ=255)                                                                                                                                                                                                                                 cGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTAAGGAGACAATCGGCTGATAGTGCa  <  1:102457/274‑1 (MQ=255)                                                                                                                                                                                                                                    agcaATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAg                                                          <  1:34206/215‑1 (MQ=255)                                                                                                                                                                                                                                                aTTTTTTCCGAGGTGAGCACGGGGGattcaagtttaagttatttacaggatctggatgtc                                                                                                                                                                                                         <  1:683479‑M2/60‑36 (MQ=255)                                                                                                                                                                                                                                                    tttCCGAGGTGAGCACGGGGGattcaagtttaagttatttacaggatctggatgtcgaca                                                                                                                                                                                                     >  2:683470‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                                                      gggATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTAAGGAGACAATCgg             >  2:613620/1‑226 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           CGCATCAACGAAAGATTTATCGATCTTCAGAATGTCGACATCCAGATCCTGTAAATAACTTAAACTTGAATACCCCGTACCAAAATCATCAAGATAAATTTCATGGCCCGCCTCCCGGTAGCGAGAAATTATCGGGGCGCTGGTTTTCGGATCGGCAAACTCGCGTTCAGTGAGTTCAAGCGCGATCTGT‑CTGGGATTAACCTGATAGTGATTGATCATGTCACGCAGCAATTGCGGGATTTTTTCCGAGGTGAGCACGGGGGATTCAAGATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTATAATCAGTAGCGTCAATGGCTCAGAAAGGCCCGTTTGCTGTGCCAGCGGAATAAAACTATCTGGTGACAACCAACTACCGTCTGTCTGCGGCCAGCGCGCCAGTGCCTCAGCACCGACAATTTTGCCATTGGCTAAGGAGACAATCGGCTGATAGTGCA  >  CP009273/472721‑473217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.