New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 850003	39 (1.010)	4 (0.110)	4/292	NT	13.3%	coding (901/1119 nt)	ybiR	putative transporter
	?	CP009273	= 851018	16 (0.450)					coding (183/921 nt)	ldtB	L,D‑transpeptidase linking Lpp to murein

CTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGTTGAGAATATTAGAGTATTGGAAGCG  >  CP009273/850759‑851261                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    agtcTTTTTTCCGCTCACTTTTGGTGGTCCATTTTATAGGCGTGTCTTTGCCTAACTGCCCACTGCCGATCGGCAGCACGATAACTGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTcggcgg                                                                                                                                                                                                                                        <  2:667697/270‑1 (MQ=255)              cTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCANCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcg                                                                                                                                                                                                                                            <  1:667706‑M2/256‑10 (MQ=255)                                                                     aTCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATAc                                                                                                                                                                                                                                >  1:454933/1‑213 (MQ=255)                                                                         gcagcaCGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCa                                                                                                                                                                                                                            <  2:454926/213‑1 (MQ=255)                                                                                                            taataaAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTa                                                                                                                                                                                                              >  2:527407/1‑192 (MQ=255)                                                                                                                aaaGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCtt                                                                                                                                                                                                          <  1:527415/192‑1 (MQ=255)                                                                                                                  aGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCGGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTGGGCAGAGGATAAGTTACCGCAGAGGCGGAACTGc                                                                                                                      >  1:375321/1‑274 (MQ=255)                                                                                                                          ctcAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCATAGGATAAGTTACCGCAGAAGCGGTACTGCAAAAGCCGa                                                                                                             >  1:227162/1‑275 (MQ=255)                                                                                                                                   gTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTc                                                                                                                                                                                                         <  1:256933/174‑1 (MQ=255)                                                                                                                                          aCGATGCTGTCATGAACGGTATCCGTAAGTATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGAAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACGCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGc                                                                                             <  1:382816/275‑1 (MQ=255)                                                                                                                                            gATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcggcacgttactgatcacctgcgataaaccgattgccgttaaccataacccgggttcagatagatgactcacgttacccaacacgccttgcaacgctggaagctgggtcagtaaatggacgtcgataaacatcgccataaacacca                                                                                            <  1:264292‑M2/274‑154 (MQ=255)                                                                                                                                                                       gcgcagtNGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTAGCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcggcacgttactgatcacctgcgataaaccgattgccgttaaccataacccgggttcagatagattactcacgttacccaacacgccttgcaacgctggaagctgggtcagtaaatggacgtcgataaacatcgccataaacaccagcagcagcgtccagtccacactgagc                                                                  >  2:264287‑M2/4‑94 (MQ=255)                                                                                                                                                                                                    tacCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGtt                                                                                                                                                        >  1:448342/1‑158 (MQ=255)                                                                                                                                                                                                        gCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCa                                                                                                                                                    <  2:448335/158‑1 (MQ=255)                                                                                                                                                                                                         ccTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcggcacgttactgatcacctgcgataaaccgattgccgttaaccataacccgggttcagatagatgactcacgttacccaacacgccttgcaacgctggaagctgggtcagtaaatggacgtcgataaac                                                                                                            <  2:450174‑M2/197‑138 (MQ=255)                                                                                                                                                                                                         ccTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcggc                                                                                                                                                                                                                                          <  1:539567‑M2/71‑12 (MQ=255)                                                                                                                                                                                                             taagccacagggTTTCAACCCCCCGGTTCGCTTCCCTCATATTGGAAAGCCCTCTCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGtt                          <  2:27985/265‑1 (MQ=255)                                                                                                                                                                                                             tCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCtggtactcggcacgttactgatcacctgcgataaaccgattgccgttaaccataacccgggttcagatagatgactcacgttacccaacacgccttgcaacgctggaagctgggtcagtaaatggacgtcgataaacatcg                                                                                                        >  1:450181‑M2/1‑56 (MQ=255)                                                                                                                                                                                                             tCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCa                                                                                                                                                                                                                                      <  2:539559/71‑1 (MQ=255)                                                                                                                                                                                                                           tCCACCCCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGTTGAGAATATTAGAGt            <  1:391781/275‑1 (MQ=255)                                                                                                                                                                                                                                  ccGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACt                                                                                                                                                                  >  1:287897/1‑118 (MQ=255)                                                                                                                                                                                                                                  ccGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGTTGAGAATATTagctgtctctt      >  1:27985/1‑265 (MQ=255)                                                                                                                                                                                                                                     ggTTCGCTTCCATCATATTGGAAAGCCCTATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCACAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGTTGAGAATATTAGAGTATTGGAAgcg  >  1:130785/1‑275 (MQ=255)                                                                                                                                                                                                                                      gTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCg                                                                                                                                                              <  2:287892/118‑1 (MQ=255)                                                                                                                                                                                                                                                                   tCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCgg                                                                                                                                                          >  1:433566/1‑93 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    CTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGATAAGTTACCGCAGAGGCGGTACTGCAAAAGCCGACAACAGCGAAGGCCGCTGCGAATAATGTTTTCAATTTCATATTCATGTTAAGCGAGATTTTGTGCCTGGCAGGCCATTGGGTTGAGAATATTAGAGTATTGGAAGCG  >  CP009273/850759‑851261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.