New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1120722	23 (0.600)	9 (0.250)	8/294	NT	26.7%	coding (61/1209 nt)	mdtH	multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin
	?	CP009273	= 1121068	28 (0.780)					coding (51/585 nt)	rimJ	ribosomal‑protein‑S5‑alanine N‑acetyltransferase

TTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGT  >  CP009273/1120839‑1121341                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  ttttCCCATCACTTCGGGGAGAATATTTTTTTATCAAAACGTCGCTTTTATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGTTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCg                                                                                                                                                                                                                                      <  1:269403/275‑1 (MQ=255)                                                        attttttATANAAATTATGAATAATGCAGAAAAGGTCTTTTTGTACTTTTCACAGGGTCTGGTTGTGCAGGTATATTAATACTTACAGCGTAGTAAAGACGTTACGGGAATGAGTAGGTATAGAAGGTTTGTCTATCGCAGTAACGTGCCAAAGGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGAGCGTGCTGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGcgac                                                                                                                                                                                <  2:56111/272‑1 (MQ=255)                                                            tttATGAAATTTTTGTATAATGGANTGAATGGCTGTGTGGACTTTTTAAAGGGTCTGGTTGCTCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAg                                                                                                                                                                           <  2:420735/275‑1 (MQ=255)                                                            tttATCAAATATGGGAATAATGCAGAAAAGTGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCATGTATAGTAATACTTACAGCGTATTAAAGACTCTACGGGAAGGAGTAGGTATAGAATGTGTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaattggctgggtcgccgtcatggtcggtattgctctcggtctacg                                                                                                                                                                           >  1:375802‑M2/1‑171 (MQ=255)                                                                       tgtgAATAAGGCATAAAATGGCATTTTTGACTTTGCACAGGGTCTGTTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctacgccaatttat                                                                                                                                                                  >  2:723594‑M2/1‑160 (MQ=255)                                                                              aatGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTCTTAAAGAGGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATAGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgctctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtgtacgctcatttattcagcattg                                                                                                                                                         <  2:218150‑M2/275‑123 (MQ=255)                                                                              aatGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActg                                                                                                                                                                                                                                                                                <  2:191274‑M2/156‑4 (MQ=255)                                                                                tGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtg                                                                                                                                                                                                                                                                          <  1:358454‑M2/160‑10 (MQ=255)                                                                                  cAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcg                                                                                                                                                                                                                                                                            >  1:191277‑M2/1‑149 (MQ=255)                                                                                    gAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTc                                                                                                                                                                                                                                                                      <  2:358448/160‑1 (MQ=255)                                                                                          ggCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGt                                                                                                                                                                                                                                                                  >  1:397083/1‑158 (MQ=255)                                                                                           gaaTTGTGGACTTGTCACAGGGGTTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGcaggccagg                                                                                                                                            <  2:662523/273‑1 (MQ=255)                                                                                              ttttGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCAt                                                                                                                                                                                                                                                              <  2:397076/158‑1 (MQ=255)                                                                                               tttGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcgttctacgccaatttattaagcaagggcagggtattttcggcg                                                                                                                                        <  1:299668‑M2/275‑140 (MQ=255)                                                                                               tttGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAACGActggtcgtgctggggttctttgttgtcatcccgctgatctctatccgnttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctaagccaatttattcagcaaggtctgggtattttcggc                                                                                                                                         <  1:540041‑M2/274‑139 (MQ=255)                                                                                                ttGGAATTTTGTTAGGGTCGGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctacgccaatttattcagcaaggtctgggtattttcggc                                                                                                                                         >  2:579757‑M2/1‑135 (MQ=255)                                                                                                                     tgctcgctgnnNTCGTAATGTTNNGAGCGTATTAGTGACGTTCCGGGCAGTAGTAGGTAGATAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTTCGCTTAACCACAGACCGActgctcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctacgccaatttattcagcaaggtctgggtattttcggcggtgcaattgccgaccgctt                                                                                                                     >  2:540033‑M2/5‑114 (MQ=255)                                                                                                                           cAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtg                                                                                                                                                                                                                                                                          <  1:561867‑M2/117‑10 (MQ=255)                                                                                                                           cAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCNAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATGTCATAAACAAgg                                                                                                            >  1:520818/1‑275 (MQ=255)                                                                                                                               tataGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTc                                                                                                                                                                                                                                                                      <  2:561858/117‑1 (MQ=255)                                                                                                                                    tAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGAc                                                                                                                                                                                                                                                                                  <  1:611648‑M2/100‑2 (MQ=255)                                                                                                                                        aCTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtg                                                                                                                                                                                                                                                                          <  2:145219‑M2/104‑10 (MQ=255)                                                                                                                                        aCTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggt                                                                                                                                                                                                                                                                              >  2:611639‑M2/1‑95 (MQ=255)                                                                                                                                        aCTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTAGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGcaggcc                                                                                                                                               >  1:407304/1‑227 (MQ=255)                                                                                                                                         cTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCg                                                                                                                                                                                                                                                                        >  2:227101/1‑105 (MQ=255)                                                                                                                                            aCAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTc                                                                                                                                                                                                                                                                      <  1:145220/104‑1 (MQ=255)                                                                                                                                             cAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTg                                                                                                                                                                                                                                                                    <  1:227106/105‑1 (MQ=255)                                                                                                                                                  tATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtg                                                                                                                                                                                                                                                                          <  2:677583‑M2/94‑10 (MQ=255)                                                                                                                                                  tATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCagag                                                                                                                                                                                                                       >  1:360457/1‑145 (MQ=255)                                                                                                                                                      aaaGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTc                                                                                                                                                                                                                                                                      <  1:677592/94‑1 (MQ=255)                                                                                                                                                      aaaGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATc                                                                                                                                                                                                                   <  2:360451/145‑1 (MQ=255)                                                                                                                                                            gTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtg                                                                                                                                                                                                                                                                          <  1:248073‑M2/84‑10 (MQ=255)                                                                                                                                                            gTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGaaa                                                                                                                                                                            >  1:231400/1‑178 (MQ=255)                                                                                                                                                            gTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCAGGa                                                                           >  1:589192/1‑275 (MQ=255)                                                                                                                                                            attACGGGAAGGTGNAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGGGCATTATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGa                                                                           <  2:520811/274‑1 (MQ=255)                                                                                                                                                                cGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTc                                                                                                                                                                                                                                                                      <  2:248068/84‑1 (MQ=255)                                                                                                                                                                cGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCa                                                                                                                                                                        <  2:231395/178‑1 (MQ=255)                                                                                                                                                                          tAGGTATAGAATGTTCGGCTATCACAGTAGCGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGNTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGataa                                                             >  1:496679/1‑273 (MQ=255)                                                                                                                                                                                 aGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGcaggc                                                                                                                                                >  1:105556/1‑185 (MQ=255)                                                                                                                                                                                  gAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAgg                                                                                                                                                         >  2:257413/1‑175 (MQ=255)                                                                                                                                                                                    aTGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTc                                                                                                  >  1:243017/1‑228 (MQ=255)                                                                                                                                                                                     tGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGcaggccagg                                                                                                                                            <  2:105555/185‑1 (MQ=255)                                                                                                                                                                                      gTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTgg                                                                                                                                                     <  1:257418/175‑1 (MQ=255)                                                                                                                                                                                       tttGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACaa                                                                                                              >  1:147804/1‑213 (MQ=255)                                                                                                                                                                                       tttGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCGGGGAGCCAGTgcg                                                                                                                                                                                    >  2:337500/1‑143 (MQ=255)                                                                                                                                                                                       ttgtgctatCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActggtcgtgctggggtgctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctacgccaatttattcagcaaggtctgggtattttcggcggtgcaattgccgaccgctttggtgccaaaccgatgattgttaccggtatgctgatgcgcgccgccggattcgccacaatgggtatcg                                                 >  1:218155‑M2/5‑48 (MQ=255)                                                                                                                                                                                        ttGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACt                                                                                              <  2:243012/228‑1 (MQ=255)                                                                                                                                                                                           gCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGActg                                                                                                                                                                                                                                                                                >  1:121455‑M2/1‑44 (MQ=255)                                                                                                                                                                                           gCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGcgac                                                                                                                                                                                <  1:337506/143‑1 (MQ=255)                                                                                                                                                                                           gCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGtt                                                                                                          <  2:147803/213‑1 (MQ=255)                                                                                                                                                                                               tCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTCTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGCCGTTGCCAATTTTTc                                          >  1:309844/1‑273 (MQ=255)                                                                                                                                                                                                   tgTATCGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCACTTCCTCAAGCCCTGTGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAACTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGAccc                                                                              <  1:122482/232‑1 (MQ=255)                                                                                                                                                                                                            ccAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGTCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCGAGCTGGCAGGCNAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCg                              >  1:647940/1‑272 (MQ=255)                                                                                                                                                                                                                   tGCGCTTAACTACAGACCGActggtcgtgctggggttctttgttgtcttcccgctgatctctatccgcttcgttgatcaaatgggctgggccgccgtcatggtcggtattgctctcggtctacgccaatttattcagcaaggtctgggtattttcggcggtgcaattgccgaccgctttggtgccaaaccgatgactgttaccggtatgctgatgcgcgccgccggattcgccacaatgggtatcgcccacgaaccgtggctattgtggttttca                    <  1:714372‑M2/275‑256 (MQ=255)                                                                                                                                                                                                                                  aCCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAgg                                                                                                                                                         >  2:158579/1‑127 (MQ=255)                                                                                                                                                                                                                                      aCTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGTCGTCTTGCGGATTATTACGCagag                                                                                                                                                                                                                       >  1:449039/1‑61 (MQ=255)                                                                                                                                                                                                                                      aCTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCt                                                                                                                                                                                                                                          >  2:665121/1‑42 (MQ=255)                                                                                                                                                                                                                                      aCTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTgg                                                                                                                                                     <  1:158582/127‑1 (MQ=255)                                                                                                                                                                                                                                      aCTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAg                                                                                                       >  1:639771/1‑173 (MQ=255)                                                                                                                                                                                                                                      aCTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAAAGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGAACTGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTGCCATTTGGTTGTTGGCTCTTTGCTTTCCTGCTagcgtggt  >  2:229934/1‑267 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  TTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCCACTGTTATCCATCAGGCTGGCAGGCCAGGCTGGGGATGATTAACGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGT  >  CP009273/1120839‑1121341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.