New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1282930 =	37 (0.960)	6 (0.160)	6/298	NT	17.9%	intergenic (‑146/+64)	tyrV/tyrT	tRNA‑Tyr/tRNA‑Tyr
	?	CP009273	1283010 =	20 (0.550)					noncoding (69/85 nt)	tyrT	tRNA‑Tyr

CTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGGGGAAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTAACGGATTAAAGGTAACCAGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGC  >  CP009273/1282770‑1283277                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                            cTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGGGGAAGGATTATTCGTCTCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACGTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTAc                                                                                                                                                                                                                                           <  1:97626/275‑1 (MQ=255) cTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGGGGAAGGATTATTCGTAGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGAGGCAACGCTCTCTCGCTTTCGCTCGAATCGAACCCTAGTCGAAGGTTCGCACCCTTCCCCGCTGAGTGCAAACGTTCACAATCTAACCGAAGTTACAACCTCGCTGCTGTGAATAATGGTGGGGGGGGAAGGGTTGGAACCTTCGAAGTCGTTgcaggcggttcga                                                                                                                                                                                                                                            >  2:97625/1‑262 (MQ=255)            tactatgggTATTTCAAATTTTGCTGTAATGCTTGAGATGGTTGTGGGTGAATGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTcc                                                                                                                                                                                                                                 <  1:18944/268‑1 (MQ=255)                    gTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGGGGAAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGcc                                                                                                                                                                                                                         >  1:133548/1‑274 (MQ=255)                                       gttggttGGGATGGTGGTGGGGGGATGATTATTCGGCGCTTCGCTCCTCACCCGTCGGGCCGTTGCCTGTGGCAACGTTCTGTCGCTTTCGCTCGAATCGAACATTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGAAAACTTTCACAATATCACCGGAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACg                                                                                                                                                                                                      <  1:451900/269‑1 (MQ=37)                                                     tggtggGGGAAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGACGGa                                                                                                                                                                                                                                                                             >  2:530691/1‑189 (MQ=255)                                                         gggggNAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGCTACCACATCGCTGTGCTGAATTATGGTGGTGGGGGAAGGATTCg                                                                                                                                                                                                                                                                         <  1:530699/189‑1 (MQ=255)                                                                                cgctCCTCACCTTTCGGGCCGTGGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCNGATGAGTGCAAACTTTCACCATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGGGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAg                                                                                                                                                               <  1:554161/272‑1 (MQ=255)                                                                                      ccaaccTTCGGGGCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGca                                                                                                                                                      <  2:133547/271‑1 (MQ=255)                                                                                                                  cGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGGCGCTGTAAAg                                                                                                                          >  1:182612/1‑275 (MQ=255)                                                                                                                        ctcGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACTGCAGATNTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCCCCCTTATCGGACAGCCGGGCGACTCCTATCAAATGACCCCCCGCTTTAAATGGTTAc                                                                                                                    >  1:597148/1‑275 (MQ=37)                                                                                                                                                                           tGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGt                                                                                                                                                                                                                                                             >  2:398010/1‑87 (MQ=255)                                                                                                                                                                               tGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGAt                                                                                                                                                                                                                                                         <  1:398017/87‑1 (MQ=255)                                                                                                                                                                                 taattcaccacagcgatgtggtaacttcggtgagattgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACgg                                                                                                                                                                                                     >  1:70431‑M2/65‑137 (MQ=255)                                                                                                                                                                                   attcaccacagcgatgtggtaacttcggtgagattgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGa                                                                                                      >  1:152870‑M2/63‑230 (MQ=255)                                                                                                                                                                                     tcaccacagcgatgtggtaacttcggtgagattgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTa                                                                                                                                                                                                 <  2:70430‑M2/77‑1 (MQ=255)                                                                                                                                                                                       accacagcgatgtggtaacttcggtgagattgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTg                                                                                                  <  2:152867‑M2/172‑1 (MQ=255)                                                                                                                                                                                             aTCTCACCGAAGTTACCACATTGCTGTGGTGAATTATGGTTGTGGGGGAAGGCTTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCg                                                                                            <  1:399525/230‑1 (MQ=255)                                                                                                                                                                                              tctcACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGAt                                                                                                                                                                                                                                               >  1:258173/1‑82 (MQ=255)                                                                                                                                                                                                  aCCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTAc                                                                                                                                                                                                                                           <  2:258168/82‑1 (MQ=255)                                                                                                                                                                                                  aCCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTAc                                                                                                                                                                                      >  1:491711/1‑135 (MQ=255)                                                                                                                                                                                                      aaGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGc                                                                                                                                                                                  <  2:491704/135‑1 (MQ=255)                                                                                                                                                                                                        gTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGAtt                                                                                                                                                                                                                                              >  2:390712/1‑73 (MQ=255)                                                                                                                                                                                                            ccACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACa                                                                                                                                                                                                                                          <  1:390718/73‑1 (MQ=255)                                                                                                                                                                                                                gagattgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCt                                                                                                                                                                         >  1:295954‑M2/34‑134 (MQ=255)                                                                                                                                                                                                                    ttgtgaaagtttgcactcatcggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATc                                                                                                                                                                     <  2:295948‑M2/105‑1 (MQ=255)                                                                                                                                                                                                                       tggtgAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCgggg                                                                                                                                                          >  2:220260/1‑142 (MQ=255)                                                                                                                                                                                                                           gAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGca                                                                                                                                                      <  1:220265/142‑1 (MQ=255)                                                                                                                                                                                                                                      gtggGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATcc                                                                                >  1:591647/1‑201 (MQ=255)                                                                                                                                                                                                                                         ggggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTNAAGTGTTAAGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTAACGGATTAAAGGTAACCAGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTCACTTAAACAAAGa       >  1:595043‑M2/9‑271 (MQ=255)                                                                                                                                                                                                                                          gggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAAccc                                                                                                                                                                                                             >  2:638347‑M2/8‑72 (MQ=255)                                                                                                                                                                                                                                          gggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTaa                                                                            <  2:591638‑M2/194‑1 (MQ=255)                                                                                                                                                                                                                                           ggaaggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATcc                                                                                >  1:76877‑M2/7‑196 (MQ=255)                                                                                                                                                                                                                                           gccaggATTCGAACCTTCGCAGTCGATGACGGCAGATTTACAGTCTGCTCCCTGTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTAACGGATTAAAGGTAACCAGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACgcgc  <  2:182609‑M2/268‑1 (MQ=255)                                                                                                                                                                                                                                             aaggATTCGAACCTCCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTc                                                                                                                                                                                                                     <  1:124841‑M2/57‑1 (MQ=255)                                                                                                                                                                                                                                              aggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCccacc                                                                                                                                                                                                         <  1:638356‑M2/69‑1 (MQ=255)                                                                                                                                                                                                                                               ggATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTaa                                                                            <  2:76876‑M2/194‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                            CTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGGGGAAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAGGTTCTCACCCTTCCCCGATGAGTGCAAACTTTCACAATCTCACCGAAGTTACCACATCGCTGTGGTGAATTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTTTTACTGGCCTGCTCCCTTATCGGGAAGCGGGGCGCATCATATCAAATGACGCGCCGCTGTAAAGTGTTACGTTGAGAAAAATGAACTGGTTGCGTAATTTTCATCCGTAACGGATTAAAGGTAACCAGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGC  >  CP009273/1282770‑1283277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.