New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1336344	31 (0.810)	4 (0.110)	4/300	NT	13.4%	coding (167/738 nt)	pyrF	orotidine‑5'‑phosphate decarboxylase
	?	CP009273	= 1336657	22 (0.600)					coding (480/738 nt)	pyrF	orotidine‑5'‑phosphate decarboxylase

TCTTGACCTGAAATTCCACGATATCCCCAACACTGCAGCGCACGCTGTCGCTGCTGCAGCTGACTTAGGCGTGTGGATGGTGAATGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAG  >  CP009273/1336384‑1336908                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                            tCTTGTCCTGAAATTCCACGATATCCCCAACACTGCAGCGCACGCTGTCGCTGCTGCAGATGACTTAGGCGTGTGGATGCTGAATGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGTCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAAt                                                                                                                                                                                                                                                            >  1:714001‑M2/1‑274 (MQ=255)                          cccAACTCTGCTGTGTCCGCTGTCGCTGCGGCAGCTGGCTTAGGCGTGTGGTTGGGGAATGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCAGTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGtt                                                                                                                                                                                                                                    <  1:585676/274‑1 (MQ=255)                                              tGTCGCTGCTGCAGCTGACTTAGGCGTGTGGATGGTGAATGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCt                                                                                                                                                                                                               >  1:322278/1‑275 (MQ=255)                                                      gtgcAGGTNTCTTTGGCGGGTGGGTGGGGGATTTTCATTCCTTGGGTGGGGCGGGTATTATGACCTCAGCGCGTGAGGTACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCCGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTaaa                                                                                                                                                                                                          <  2:72093/271‑1 (MQ=255)                                                                                   aaTGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTCTCACCTGCAGANTATGCAGAACGTCTGGCGGTACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAg                                                                                                                                                                                                                        >  1:651457/1‑229 (MQ=255)                                                                                           tGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACTCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCa                                                                                                                                                                  >  1:401442/1‑275 (MQ=255)                                                                                                                        cAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTCAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGAc                                                                                                                                     >  1:92396/1‑275 (MQ=255)                                                                                                                            gcgTGTGTCACTGTGTCCGTTTTGCTAAGATGCATCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAgc                                                                                                                                 <  1:329563/275‑1 (MQ=255)                                                                                                                                        gggtgcGTTTGGCAAGGATGACATGGTTTTGTTTGCTTGGAGAGGGTTTACCAGAATTGAAGCAAGGGAACTGGTCGAGCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACTGATGGGGGCACGGACGAAAAAATGTGGACTTGATGGTGTGGTGTGTTCAGCGCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTAt                                                                                                                       <  2:706929/268‑1 (MQ=255)                                                                                                                                          ttCCGTTTGGAAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAAGTATGCGGTCAGTAGTTCAAACTGGTTACGCCGTGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGcgccgaa                                                                                                                           >  1:706939/1‑265 (MQ=255)                                                                                                                                                                       aTTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGgtgt                                                                                         <  2:322272/272‑1 (MQ=255)                                                                                                                                                                                    tgtTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAg                                                                                                                                                                                                                        >  2:167564/1‑132 (MQ=255)                                                                                                                                                                                        gACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCtgt                                                                                                                                                                                                                    <  1:167567/132‑1 (MQ=255)                                                                                                                                                                                              cATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAAtgtggcccaaacaatgtaaacatctctttgccgaccttcagacgacaatcgcgtgggtcgatcttgtcgacaaaggccagcgcgtcatcacgattatgataatcaagggcaacaaccacaggagaattcgtaaca                                                                                                                      <  2:655739‑M2/220‑136 (MQ=255)                                                                                                                                                                                                  gAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAAtgtggcccaaacaatgtaaacatctctttgccgaccttcagacgacaatcgcgtgggtcgatcttgtcgacaaaggccagcgcgtcatcacgattatgataatcaagggcaacaaccacaggagaattcgtaacagcgc                                                                                                                  >  1:655748‑M2/1‑81 (MQ=255)                                                                                                                                                                                                        aGCGACCTGGTCGATCTTGGCATAACACTCTCACCTGCAGATTATGCCGAACGTCTGGCGGCACTGACGCAACAATGTGGCCTTGATGGAGCGGCGAGTTCTGCTCAGGAAGCTGTTCGCTTTAAACAGGTATTCGGTCCGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTAGTGACCAGCGCCGCAATATGACGCCAGAACAGGCGTTGTCGGCCGGTGGTGATTATATGGTGGTGTGGCGTCCGGTAACGCCATc                                                     >  2:248948/1‑275 (MQ=255)                                                                                                                                                                                                             ccTGGTCGATCTTGGCCTGACACTGTCATCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTg                                                                                                                                                >  1:527736/1‑179 (MQ=255)                                                                                                                                                                                                                 gTCGATCTTTGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTTGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGc                                                                                                                                            <  2:527728/179‑1 (MQ=255)                                                                                                                                                                                                                           gCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAAtgtggcccaaacaatgtaaacatctctttgccgaccttcagacgacaatcgcgtgggtcgatcttgtcgacaaaggccagcgcgtcatcacgattatgataatcaagggcaacaaccac                                                                                                                                      <  2:250837‑M2/175‑120 (MQ=255)                                                                                                                                                                                                                               gACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAAtgtggcccaaacaatgtaaacatctctttgccgaccttcagacgacaatcgcgtgggtcgatcttgtcgacaaaggccagcgcgtcatcacgattatgataatcaagggcaacaaccacagga                                                                                                                                  >  1:250842‑M2/1‑52 (MQ=255)                                                                                                                                                                                                                                          cTGCAGATTATGCATAACGTCGTGCGGCACTTACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTANACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGACGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGTCGCTGAAAGGGATCaa                    <  1:529392/274‑1 (MQ=255)                                                                                                                                                                                                                                           tGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATCTGGTGATTGGTCGCCCGGTAACGCACGCGGTCGATCCAGCGCAGACGCGGAAAGCGATCAACg                  >  2:289290/1‑275 (MQ=255)                                                                                                                                                                                                                                            gtaGATTATGAAGAAGGTCTGGCGGCACTGAGGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACg                  <  1:413648/272‑1 (MQ=255)                                                                                                                                                                                                                                                    tGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGACGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTCTAAACAGGTATCCGGTCAGGAGTTCAAAATGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTCTGACGCAAAAACAGGCGTTGTCGGCTGGTGTGGATTATATGGGGATTGGTGGCCCGGACACGGAGACGGGAGATGGAGCGAAGCAGGTGAAAGCGATCaaggaatacagac         >  2:111067/1‑264 (MQ=255)                                                                                                                                                                                                                                                            gTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAg  <  1:289296/274‑1 (MQ=255)                                                                                                                                                                                                                                                                      aCTGACGCCAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGtt                                                                                        >  1:4879/1‑178 (MQ=255)                                                                                                                                                                                                                                                                          aCGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCGGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGAtt                                                                                    <  2:4879/178‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                            TCTTGACCTGAAATTCCACGATATCCCCAACACTGCAGCGCACGCTGTCGCTGCTGCAGCTGACTTAGGCGTGTGGATGGTGAATGTTCATGCCTCTGGTGGGGCGCGTATGATGACCGCAGCGCGTGAGGCACTGGTTCCGTTTGGCAAAGATGCACCGCTTTTGATTGCTGTGACAGTGTTGACCAGCATGGAAGCCAGCGACCTGGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCAAAAATGTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAG  >  CP009273/1336384‑1336908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.