New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2038723 =	15 (0.390)	8 (0.230)	7/290	NT	37.3%	coding (305/7077 nt)	yeeJ	putative adhesin
	?	CP009273	2038836 =	13 (0.370)					coding (418/7077 nt)	yeeJ	putative adhesin

GCCGCAACCCAACAACCAGTTCCTGCACAAATTGCCATTGCAAATGCCAATACGGTGCCCTACACCCTTGGAGCGTTGGAATCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGCCTGATAATCTCTTTTTCAGTCAGCATACTCTCCATCGTACTGACGA  >  CP009273/2038569‑2039104                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                             gccgcAACCCAACAACCAGTTCCTGCACAAATTGCCATTGCAAATGCCAATACGGTGCCCTACACCCTTGGAGCGTTGGAATCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTAAGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAAATGGATGTCCAGGGACAAGTTAGTGAAAAAAAATTAACCCGGCCGCCGGGAAATAGAAGTGACAACCTAGAGCAACAGATAGc                                                                                                                                                                                                                                                                       >  2:171050/1‑275 (MQ=255)     cAACCCAACAACCCGTTCCTGCACAAATTGCCATTGCAAATGCCAATACGGTTCCCTACACCCTGGGAGCGTTGGAATCGGCCCAAAGCGTGGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAg                                                                                                                                                                                                                                                                    <  1:722055/274‑1 (MQ=255)          caacacCCTGTTCCTTCACAAATTGCCATTGCAAATGCCAAGACGGTGCCCTACACCCTTGGAGCGTTGGAATCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACtt                                                                                                                                                                                                                                                               <  1:171053/274‑1 (MQ=255)                                                                            ttGGAATCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACa                                                                                                                                                                                                                                                                             >  2:423403/1‑194 (MQ=255)                                                                                aaTCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATa                                                                                                                                                                                                                                                                         <  1:423410/194‑1 (MQ=255)                                                                                                                                                                               tattacccggcggcggggttaattttttttcactaacttgtgccgggacatccagttcatcaccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGc                                                                                                                                                                                                                                                         >  1:149171‑M2/94‑115 (MQ=255)                                                                                                                                                                                   gCCAGGGTGATGAACTGGATTTCCCGGCACACGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAACCCGCTTCGGt                                                                                                                                     <  1:722325/227‑1 (MQ=255)                                                                                                                                                                                   acccggcggcggggttaattttttttcactaacttgtgccgggacatccagttcatcaccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAAt                                                                                                                                                                                                                                                     <  2:149170‑M2/26‑1 (MQ=255)                                                                                                                                                                                             tgaACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCa                                                                                                                                                                      >  1:428448/1‑184 (MQ=255)                                                                                                                                                                                                 cTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGgcg                                                                                                                                                                  <  2:428441/184‑1 (MQ=255)                                                                                                                                                                                                         ttttcactaacttgtgccgggacatccagttcatcaccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTc                                                                                                                                                                                                                                        >  2:226730‑M2/68‑106 (MQ=255)                                                                                                                                                                                                            ggCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTc                                                                                                                                                                                                                                        >  2:104725/1‑103 (MQ=255)                                                                                                                                                                                                             gCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGCTAATAGAAGTGACAACCTCGAGCAACAg                                                                                                                                                                                                                                                                            <  1:510958/66‑1 (MQ=255)                                                                                                                                                                                                             cactaacttgtgccgggacatccagttcatcaccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCg                                                                                                                                                                                                                                    <  1:226735‑M2/43‑1 (MQ=255)                                                                                                                                                                                                                caAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCg                                                                                                                                                                                                                                    <  1:104726/103‑1 (MQ=255)                                                                                                                                                                                                                        tGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGata                                                                                                                                                                                                                              >  2:335850/1‑101 (MQ=255)                                                                                                                                                                                                                            aaaaaaTTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGaa                                                                                                                                                                                                                          <  1:335856/101‑1 (MQ=255)                                                                                                                                                                                                                                       tcatcaccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTc                                                                                                                                                                                                                                        >  2:230053‑M2/38‑76 (MQ=255)                                                                                                                                                                                                                                           ccgccgGGTAATAGCAGTGCCAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGCCTGATAATCTCTTTTtca                              >  1:577679/1‑274 (MQ=255)                                                                                                                                                                                                                                           caccctggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCg                                                                                                                                                                                                                                    <  1:230058‑M2/43‑1 (MQ=255)                                                                                                                                                                                                                                                tggcggacattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGaa                                                    >  1:318159‑M2/29‑247 (MQ=255)                                                                                                                                                                                                                                                  gTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGCCTGATAATCTCTTTTTCAGTCAGCAt                      <  1:401443/275‑1 (MQ=255)                                                                                                                                                                                                                                                    ggccattatcaaaacctcgagcaaCAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGc                                                <  2:318153‑M2/223‑1 (MQ=255)                                                                                                                                                                                                                                                                      gagcaaAAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGAAATGACAGACTGGTTAAGCCGCTACGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGCCTGATAATCCATTTTTCAGTCAGAATACTCTCCACCGAACTgactc  >  1:49186‑M2/7‑273 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                             GCCGCAACCCAACAACCAGTTCCTGCACAAATTGCCATTGCAAATGCCAATACGGTGCCCTACACCCTTGGAGCGTTGGAATCGGCCCAAAGCGTTGCCGAACGTTTCGGTATTTCGGTGGCTGAGTTACGCAAACTCAACCAGTTTCGTACGTTTGCTCGAGGTTTTGATAATGTCCGCCAGGGTGATGAACTGGATGTCCCGGCACAAGTTAGTGAAAAAAAATTAACCCCGCCGCCGGGTAATAGCAGTGACAACCTCGAGCAACAGATAGCCAGTACTTCACAGCAAATCGGGTCTCTGCTCGCCGAAGATATGAACAGCGAGCAAGCGGCAAATATGGCGCGTGGATGGGCCTCTTCTCAGGCTTCAGGCGCAATGACAGACTGGTTAAGCCGCTTCGGTACCGCAAGAATCACGCTGGGCGTGGATGAAGATTTTAGCCTGAAGAACTCCCAGTTCGATTTTCTCCATCCGTGGTATGAAACGCCTGATAATCTCTTTTTCAGTCAGCATACTCTCCATCGTACTGACGA  >  CP009273/2038569‑2039104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.