New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2893788	37 (0.960)	5 (0.140)	4/300	NT	14.6%	intergenic (‑156/‑163)	ygcW/yqcE	putative dehydrogenase/MFS transporter family protein
	?	CP009273	= 2893942	23 (0.630)					intergenic (‑310/‑9)	ygcW/yqcE	putative dehydrogenase/MFS transporter family protein

AGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCG  >  CP009273/2893669‑2894149                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                cggatacatcanacgcgagagggaagttacCTTTCTCATTATCTCTGGTAACTGGAGTTAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGGGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGa                                                                                                                                                                                                                >  2:65391‑M2/14‑274 (MQ=255)                         aGTTTCTTTTCTCATGTTCTCTGGTATCTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCata                                                                                                                                                                                        <  1:56739/275‑1 (MQ=255)                                                                               tAACTGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATc                                                                                                                                                                                      >  2:690256/1‑223 (MQ=255)                                                                                   tGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCg                                                                                                                                                                                  <  1:690265/223‑1 (MQ=255)                                                                                          gtgATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATc                                                                                                                                                                                      >  1:723662/1‑212 (MQ=255)                                                                                              tCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCg                                                                                                                                                                                  <  2:723652/212‑1 (MQ=255)                                                                                                      acaGTGTGATATTCGTATTGTCAAATAATTGTAAAAAGCAGAAGTGTGATTACTCTCATACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACGTTTCTCTTTTTGTTGTCGATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATAttt                                                                                                           <  1:334602/275‑1 (MQ=255)                                                                                                              atatTCGTATTGTCAAATAATTGTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGAt                                                                                                                                                                            <  2:172638/202‑1 (MQ=255)                                                                                                                             aataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGa                                                                                                                                                                                                                >  2:372253‑M2/1‑150 (MQ=255)                                                                                                                                           gCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacgaatatcacactgtgattacgatcacattagcagttatgc                                                                                                                                                                    <  1:191001‑M2/181‑46 (MQ=255)                                                                                                                                             aGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATACACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacgaatatcacactgtgattacgatcacattagcagttatgcccttntgctaaaaattatctccagttaccagagataatgagaaaggtaacttccctctcgcgggggaagttacctttctttttttttgcctaacgg                                                                    <  1:507055‑M2/275‑142 (MQ=255)                                                                                                                                             aGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTAAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacgaatatcacactgtgattacgatcacattagcagttatgcccttatgctaaaaattatctccagttaccagagataatgagaaaggtaacttccctcacgcgggggaagttacctttctttttttttgccttac                                                                      <  1:30447‑M2/273‑140 (MQ=255)                                                                                                                                               aaGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacgaatatcacactgtgattacgatcacattagcagttatgccctt                                                                                                                                                                >  2:190998‑M2/1‑132 (MQ=255)                                                                                                                                                    tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTc                                                                                                                                    >  1:679476/1‑204 (MQ=255)                                                                                                                                                        tACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGAcc                                                                                                                                <  2:679467/204‑1 (MQ=255)                                                                                                                                                                         tctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTTGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGAGAAATTTATGGGATTCAGCAATAACGAGATAGGTTTAATAATGAGTACCtt                                        >  1:575264/1‑275 (MQ=255)                                                                                                                                                                               ttCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTAtt                                                                                                                       >  1:364717/1‑190 (MQ=255)                                                                                                                                                                                   aTGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACg                                                                                                                   <  2:364711/190‑1 (MQ=255)                                                                                                                                                                                                   cAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGa                                                                                                                                                                 >  2:137954/1‑128 (MQ=255)                                                                                                                                                                                                   cAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATTATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTTTATTTCTCAAATTCTCATTGCGATATTTATGGGATTCAGCAATACCgag                                                               >  1:184420/1‑226 (MQ=255)                                                                                                                                                                                                   cAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCgag                                                               >  1:287007/1‑226 (MQ=255)                                                                                                                                                                                                       tACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAAt                                                                                                                                                             <  1:137955/128‑1 (MQ=255)                                                                                                                                                                                                       tACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAg                                                           <  2:287002/226‑1 (MQ=255)                                                                                                                                                                                                            gtgacaTGAGAAACGTAATCCACCTGTAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacgaatatcacactgtgattacgatcacattagcagttatgcccttatgctaaaaattatctccagttaccagagataatgagaaaggtaacttccctctcgcgggggaagttacctttctttttttttgccttacggaaattggagctaactatgtcaatcgaatctctcaatgcgttctcaatggattttttctccctg     >  2:507048‑M2/3‑71 (MQ=255)                                                                                                                                                                                                               aCCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGCCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTCTCAAATTCCCCTGGCGAAATTTATGTGATTCAGCAATACCGAGATCGGTTTAATAAANATTACCTTTGGTATTGCGTCCATTATGCTTTAGACCTCCAgcttcc  >  2:451971/1‑271 (MQ=255)                                                                                                                                                                                                                              tCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTGTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAANACCGAGATAGGTTtaataa                                                  >  1:472472/1‑212 (MQ=255)                                                                                                                                                                                                                                  ccTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATCATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCGTATTGACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGAt                                                             <  1:146495/197‑1 (MQ=255)                                                                                                                                                                                                                                  ccTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAg                                              <  2:472465/212‑1 (MQ=255)                                                                                                                                                                                                                                   cTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCatat                                                                                                                                                                                       >  2:457857/1‑74 (MQ=255)                                                                                                                                                                                                                                       aaGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGcc                                                                                                                                                                                   <  1:457864/74‑1 (MQ=255)                                                                                                                                                                                                                                        aGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaatacga                                                                                                                                                                                                          <  1:637792‑M2/50‑8 (MQ=255)                                                                                                                                                                                                                                            cggcTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATg                                                                                                                                                                                                      <  2:637783/50‑1 (MQ=255)                                                                                                                                                                                                                                                                              aTGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGttt                                                                                                                                     >  1:270467/1‑81 (MQ=255)                                                                                                                                                                                                                                                                                  gAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGAc                                                                                                                                 <  2:270462/81‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                AGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCG  >  CP009273/2893669‑2894149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.