New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2895803	27 (0.700)	5 (0.140)	5/298	NT	16.5%	coding (549/1479 nt)	ygcE	putative kinase
	?	CP009273	= 2896198	25 (0.690)					coding (944/1479 nt)	ygcE	putative kinase

GGCGGTAATTTCTCTTGGCACTTACATCGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCA  >  CP009273/2895926‑2896440                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                   ggcggTAATTTCTCTTGGCACTTACATCGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATga                                                                                                                                                                                                                                                  >  1:428479‑M2/1‑273 (MQ=255)          ttCTCTTGGCACTTACATCGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGGCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAATAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTgg                                                                                                                                                                                                                                         <  1:676341/275‑1 (MQ=255)                                              cAAATCTCTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCATACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCCCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAAcgcg                                                                                                                                                                                                     <  1:61588/275‑1 (MQ=255)                                                        tggAAAGATCGAGTAGTGTTCGGGGTGATTATGTCTTCTATTCCGGAAACATTGCTGTATGAAGGTTACGGTATTCGGAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGAt                                                                                                                                                                                           <  1:414699/273‑1 (MQ=255)                                                                         gTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgac                                                                                                                                                                                                                                                 >  1:598538‑M2/1‑201 (MQ=255)                                                                          tACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGACGATTTGCTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCAt                                                                                                                                                                         >  1:636603/1‑275 (MQ=255)                                                                              ggCCGGTTTTGGTTTTTATTACGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGAGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGa                                                                                                                                                                      <  1:322616/274‑1 (MQ=255)                                                                              ggCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATga                                                                                                                                                                                                                                                  >  1:637789‑M2/1‑196 (MQ=255)                                                                                   aTTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTAAGGATGCCAGGGCGCCGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGCTGACGGTGCTGGACTGGCTGATCAATCCGTGGGAACAGTACa                                                                                                                                                                                                           >  1:305350/1‑232 (MQ=255)                                                                                       ggTCTGCGATGCCGCAAACAATGCTGTATGAAGGTGACTGTATTCGCAAAGGCATGTGGACGGTGTGCTTGCTGCGCTACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGTGTGCAGGAGCTTTCACCGGAAGATTTACTCAACAAAATAGCTTCTTGGGTGCCGCCAGGCTGTAAGGGGGTGATGACGGTGCTGGATTGTCTTACCAATCCGTGGGAACCGTACAAAcg                                                                                                                                                                                                       <  2:305344/231‑1 (MQ=255)                                                                                         tcttctATCCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAATGCAGGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGGCGGTACTTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTAATCAACAAAAAAGCTTCTAGTGTGCCGCCAGGCTGTAATGGACTGATGACGGTGCAGGACTGGCTGACCAATCCGGTGGAACCGTTCAAAACCGGGATTATGATCGGCATGGATCGCAGCATGCTGTACGCACGGag                                                                                                                                                          >  2:129391/1‑274 (MQ=255)                                                                                                  ccGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCGGGCTGCGCGACATGCTAGGCGGGTCGTTAATTGAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgacggtgccaggcatttgcacatcaaacagcatatgacgggggatattaaacttatccattaccgcagcatcttcgctccatgcccagctcttataat                                                                                                                                                  >  1:210186‑M2/1‑176 (MQ=255)                                                                                                                   tGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTAAGAACgg                                                                                                                                                                                        >  2:110941/1‑219 (MQ=255)                                                                                                                       ggTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAACAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCTGCttt                                                                                                                                                                                    <  1:110942/219‑1 (MQ=255)                                                                                                                           aCGGTATTCGCAGAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGATAATTCAGGATGCGAGGGCGCAGGATCTTTCACCGGAAGATTTACTAAACAAAAAAGCTGCTGGTGTGCCGCCAGGGTGTGATGGTCTGAGGAGGGGGCTGGAGTGGCGGACCAATCCGTGGGAACCGTCCAAACGAGGGATTATGCTCGGCTTGGATTCGAGCATGGATTGAGAAGGGATATATAGTTCGATAATGGAAGGCAAGgcgcatac                                                                                                                         >  2:131998/1‑270 (MQ=255)                                                                                                                           aCGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGNCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgacg                                                                                                                        >  1:617582/1‑275 (MQ=255)                                                                                                                               tagtCGCAAAGGGCTGTGGACGGGGGGCGGGCTGCGCGACATGCTAGGCGATTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCAGCGGAAGATGTACGAAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgacgctg                                                                                                                     <  2:636594/271‑1 (MQ=255)                                                                                                                               tATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCtgat                                                                                                                                                                                                                                                    <  1:445683/147‑1 (MQ=255)                                                                                                                                        aGGGATGTGGGCGGTGTGCTGGCGTCGCGACATGCTAGGCTAGTCGTTAATTCAGGATGCCAGGGGGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGGGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAAtt                                                                                                           <  1:352572/275‑1 (MQ=255)                                                                                                                                           cATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAGCAATTACg                                                                                                        <  1:129392/275‑1 (MQ=255)                                                                                                                                             tgtgGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATga                                                                                                                                                                                                                                                  >  1:71107‑M2/1‑133 (MQ=255)                                                                                                                                                        aGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATga                                                                                                                                                                                                                                                  >  1:449961‑M2/1‑122 (MQ=255)                                                                                                                                                                       aTGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATAGTTAGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATAAAATGAAtacatt                                                                            >  1:40060/1‑270 (MQ=255)                                                                                                                                                                                 aGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACa                                                                                                                                                                                                           >  1:602383/1‑138 (MQ=255)                                                                                                                                                                                     gTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAAcg                                                                                                                                                                                                       <  2:602374/138‑1 (MQ=255)                                                                                                                                                                                        aaTTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACa                                                                                                                                                                                                           >  2:222413/1‑131 (MQ=255)                                                                                                                                                                                            cAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAAcg                                                                                                                                                                                                       <  1:222418/131‑1 (MQ=255)                                                                                                                                                                                             aGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgacggtgccaggcatttgcacatcaaacagcatatgacgggggatattaaacttatccattaccgcagcatcttcgctccatgcccagctcttataatccaccggccactgaccaaactagttggcgatattgtctttaaactcgccggttaagagatgcgtcagatcacccgcaaaagcggtgacatcg                                                      <  2:296396‑M2/275‑191 (MQ=255)                                                                                                                                                                                                 tGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgacggtgccaggcatttgcacatcaaacagcatatgacgggggatattaaacttatccattaccgcagcatcttcgctccatgcccagctcttataatccaccggccactgaccaaaatagttggcgatattgtctttaaactcgccggttaagcgatgcgtcagataacccgaaaaagaggtg                                                            >  1:296402‑M2/1‑81 (MQ=255)                                                                                                                                                                                                             ggATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgacggtgccaggcatttgcacatcaaacagcatatgacgggggatattaaacttatccattaccgcagcatcttcgctccatgcccagctcttacaatccaccggccactgaccaaaatagttgacgatattgtctttacac                                                                                                      <  2:1953‑M2/211‑143 (MQ=255)                                                                                                                                                                                                              gATCGTTCACTGGAAGATTTACGCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGCTCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACa                                      <  1:575709/274‑1 (MQ=255)                                                                                                                                                                                                                 cTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATgacggtgccaggcatttgcacatcaaacagcatatgacgggggatattaaacttatccattaccgcagcatcttcgctccatgcccagctcttataatccaccggccactgaccaaaatagttggcgatattgtctttaaactcgc                                                                                                  >  1:1953‑M2/1‑65 (MQ=255)                                                                                                                                                                                                                                     caacaaAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCAt                                                                                                                                                                         >  1:706137/1‑120 (MQ=255)                                                                                                                                                                                                                                         aaaaaaGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGAt                                                                                                                                                                     <  2:706127/120‑1 (MQ=255)                                                                                                                                                                                                                                                 ttgttGTGTGCCGCCAGGTGGTAATGGTTGGATGACGGTGCTTGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCa  <  1:154938/272‑1 (MQ=255)                                                                                                                                                                                                                                                              ccAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGAt                                                                                                                                                                     >  2:574506/1‑99 (MQ=255)                                                                                                                                                                                                                                                                  gCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACg                                                                                                                                                                 <  1:574515/99‑1 (MQ=255)                                                                                                                                                                                                                                                                                atgaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgac                                                                                                                         >  2:698147/1‑125 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                   GGCGGTAATTTCTCTTGGCACTTACATCGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGATTTACTCAACAAAAAAGCTTCTTGTGTGCCGCCAGGCTGTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCA  >  CP009273/2895926‑2896440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.