New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4447006 =	NA (NA)	4 (0.110)	4/298	NT	10.5%	noncoding (5/84 nt)	REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	CP009273	4447104 =	34 (0.930)					intergenic (+129/+27)	mpl/yjgA	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein

ATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAACAGCACCACCTGCTGGTTGTGACGGTTTTTCAGC  >  CP009273/4446836‑4447374                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                               aTGGGGATAAGTTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa                                                                                                                                                                                                                                                                           <  1:101676/274‑1 (MQ=255)                         tggtgAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGANAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTAc                                                                                                                                                                                                                                                  >  1:611972/1‑275 (MQ=255)                           gtgAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCCACGCTTGATGCGTCTTATCAGGCCAACAGGTGCACCGTATCCGGCCAACCATACACACCTCAACAGCGaatagtaac                                                                                                                                                                                                                                                 >  2:114288/1‑267 (MQ=255)                                                                 gaGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCa                                                                                                                                                                                                                                                                                >  1:46879/1‑205 (MQ=255)                                                                     aaCGGCGGTTTTGGTGGGACCAATCAGAAACTGCTGGATGGGCTGGAGAAGAAGGCGGAAGCCGCGCAGTAATGCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCGTATCAGGCCTACAGGTGCACCGTATCCGGCAAAcc                                                                                                                                                                                                                                                                            <  2:46879/205‑1 (MQ=255)                                                                                  gttggATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTCTGCGTAGGCCGGATCAGGCGTTCACGCAGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTACGTTCTCCGCTAACTCGCGCAGATACTGGAACATCTGGCGTGCGGATTTcgg                                                                                                                                                                                          <  1:392521/271‑1 (MQ=255)                                                                                   tggGTTCCATCAGAAACTGCTGTATGGGATGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTcggc                                                                                                                                                                                         <  1:253308/274‑1 (MQ=255)                                                                                                                                                  ccTTAGCCAGATATAGTATGCGTAGGCCGGATAAAGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATANTGGAAAATNTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGctg                                                                                                                                                     >  1:484045/1‑245 (MQ=255)                                                                                                                                                            atatAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCACATCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTAACGATCGGCATCGGGcc                                                                                                                >  1:205648/1‑274 (MQ=255)                                                                                                                                                                    tGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTa                                                                                                       >  1:308997/1‑275 (MQ=255)                                                                                                                                                                      cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCtt                                                                                                                                                                                                                                              >  1:120648/1‑138 (MQ=255)                                                                                                                                                                      cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCtt                                                                                                                                                                                                                                              >  2:441906/1‑138 (MQ=255)                                                                                                                                                                      cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTCCGCAGTTGCTGACGATCGGCATCGGGCCACAGCTTTAAt                                                                                                     >  1:172292/1‑275 (MQ=255)                                                                                                                                                                          ggCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGtt                                                                                                                                                                                                                                          <  1:441913/138‑1 (MQ=255)                                                                                                                                                                          ggCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGtt                                                                                                                                                                                                                                          <  2:120647/138‑1 (MQ=255)                                                                                                                                                                           GCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCNGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCt                                                                                                 <  1:522428‑M1/274‑1 (MQ=255)                                                                                                                                                                             CGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCt                                                                                                 >  2:308991‑M1/1‑272 (MQ=255)                                                                                                                                                                                ATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCg                                                                                            <  1:244486‑M1/274‑1 (MQ=255)                                                                                                                                                                                    ggCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATgg                                                                                        <  2:244481/274‑1 (MQ=255)                                                                                                                                                                                          cACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTCGTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGCGTACGCCGTTGCTGATGATCGGCATCAGGCCCAAAATTTAATATCTCAGCGATGGCTtaatc                                                                                 >  1:379345/1‑275 (MQ=255)                                                                                                                                                                                                gcATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTg                                                                           <  1:114289/275‑1 (MQ=255)                                                                                                                                                                                                 gagcgggCAGTTGAGCATAGTGCCGGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACGCACAGCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTga                                                                          <  2:172289/270‑1 (MQ=255)                                                                                                                                                                                                     gataagacgcatcaagcgtcgcatcaggcactatgctcaaatgccggatgcggcgtgaacgccttatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGAtt                                                                                                                                                                                              >  1:646799‑M2/73‑155 (MQ=255)                                                                                                                                                                                                         agacgcatcaagcgtcgcatcaggcactatgctcaaatgccggatgcggcgtgaacgccttatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTcgg                                                                                                                                                                                          <  2:646790‑M2/87‑1 (MQ=255)                                                                                                                                                                                                                cATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTcgg                                                                                                                                                                                          >  2:49913/1‑148 (MQ=255)                                                                                                                                                                                                                 caaatGCCGGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGACCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTAAGCGATGGCGTCATCCCCTTGATNGATCCGACTATctc                                                          >  2:536276/5‑273 (MQ=255)                                                                                                                                                                                                                 attgTGCCTGATGCGACGCTTACTTCGTCTTATCAGTCCTACAGGTGCACCGTATCCGGCTAACCATACTCACTTCAACAACGAAAATTACCCTTCGTTCTCCGCTATCTCGCGCAGGTACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTACTTCGCGTTGCTGATCAGAGGACGCAGTTGCTGACGATCGGTATCGAGCCCCAGATTTAATATCTCATCGATGGCGTCATCACCGTGATCGATCAGACGCTcgc                                                          <  2:205644/272‑1 (MQ=255)                                                                                                                                                                                                                    gTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCggcggc                                                                                                                                                                                      <  1:49913/148‑1 (MQ=255)                                                                                                                                                                                                                      gCCGGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTGTCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTaa                                                                                                      <  1:368828/226‑1 (MQ=255)                                                                                                                                                                                                                       ccTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTtctc                                                                                                                                                                                                                                       >  2:261333/1‑96 (MQ=255)                                                                                                                                                                                                                          gATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATGAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATAGCGCAGGtttt                                                 >  1:370188/1‑275 (MQ=255)                                                                                                                                                                                                                           aTGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCt                                                                                                                                                                                                                                   <  1:261338/96‑1 (MQ=255)                                                                                                                                                                                                                               gACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCag                                                                                                                                                >  2:530629/1‑175 (MQ=255)                                                                                                                                                                                                                                   cTTGATGCGTCTTATCAGGCCTACAGGTGCGCCGTATCCGGCAAACCATa                                                                                                                                                                                                                                                                         <  1:574824/50‑1 (MQ=255)                                                                                                                                                                                                                                   cTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTACTCTTTCTTCGCGTTGCGGATCAGAGTa                                                                                                                                            <  1:530637/175‑1 (MQ=255)                                                                                                                                                                                                                                          caaatgccggatgcggcgtgaacgccttatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCt                                                                                                                                                                                                                                   >  2:233624‑M2/36‑81 (MQ=255)                                                                                                                                                                                                                                              ttATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCTGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGCTTTAATACCTTCGCGATGGCGTCATCACCTTGCTCGATCAGACTATCGACCAGGTTTTCAAGTTTATGGAACCAcacc                             >  1:415848/1‑275 (MQ=255)                                                                                                                                                                                                                                              tgccggatgcggcgtgaacgccttatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACt                                                                                                                                                                                                                               <  1:233629‑M2/50‑1 (MQ=255)                                                                                                                                                                                                                                                          cAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGt                                                                                                                                                          >  2:551375/1‑138 (MQ=255)                                                                                                                                                                                                                                                              tGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCg                                                                                                                                                      <  1:551384/138‑1 (MQ=255)                                                                                                                                                                                                                                                               gCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCCGTTGCTGACGATCGGCATCGGGCCCCAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATAAGACGATCGCGCAGGTTTTCCAGTTTACGGAACAGCACAACCTGCTGATTGTGACg            >  1:282458/1‑275 (MQ=255)                                                                                                                                                                                                                                                               gCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGc                                                                                                                 >  1:109921/1‑174 (MQ=255)                                                                                                                                                                                                                                                               gCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGNTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAACAGCACCACCTgctggctggaagt            >  1:612266/1‑270 (MQ=255)                                                                                                                                                                                                                                                                   cGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCcaca                                                                                                             <  2:109920/174‑1 (MQ=255)                                                                                                                                                                                                                                                                     tatcctgcAAACCATACTCACATCAACAACGATAATTTCCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAAAAGCACCACCTGCTGGTTGTGACGGtttt       <  1:331323‑M2/266‑1 (MQ=255)                                                                                                                                                                                                                                                                     tatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTTGAAAATCAGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTACGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAACAGCACCACCTGCTGGTTGTGACGGtttt       <  1:673373‑M2/266‑1 (MQ=255)                                                                                                                                                                                                                                                                     tatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGGTGCTGACGATCNGCATCGGGCAACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGATTATGGAACAACACCACCTGCTggttgtgaacacatt       >  1:662531‑M2/9‑267 (MQ=255)                                                                                                                                                                                                                                                                     tatccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCAGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAACAGCACCACCTGCTGGTTGTGACGGtttt       <  1:396444‑M2/266‑1 (MQ=255)                                                                                                                                                                                                                                                                       tccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGAtt                                                                                                                                                                                              >  2:659037‑M2/7‑89 (MQ=255)                                                                                                                                                                                                                                                                       tccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGCTCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATAAGACGATCACTCAGGTTTTCCAGTTTCTGGAACAGCACACCCTGCTGGTTGGTACGGttttt      >  2:318947‑M2/7‑273 (MQ=255)                                                                                                                                                                                                                                                                        ccggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTcgcg                                                                                                                                                           >  2:376235‑M2/6‑123 (MQ=255)                                                                                                                                                                                                                                                                          ggcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATGTAATACCTCAGCGATCGCGTCATCACCTTGATCGATTATACGATCGAGCAGGTTTTCCAGTTTATGGAACAGCACAACCTGCTGGTTGTGACGGGTTTTCAGc  >  1:458982‑M2/4‑274 (MQ=255)                                                                                                                                                                                                                                                                           gcAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTcgg                                                                                                                                                                                          <  1:659046‑M2/87‑1 (MQ=255)                                                                                                                                                                                                                                                                            cAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGc                                                                                                                                                       <  1:376241‑M2/122‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                               ATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTGGCGTGCGGATTTCGGCGGCTTATTCCCTTCTTTCTCTTTCTTCGCGTTGCGGATCAGAGTACGCAGTTGCTGACGATCGGCATCGGGCCACAGATTTAATACCTCAGCGATGGCGTCATCACCTTGATCGATCAGACGATCGCGCAGGTTTTCCAGTTTATGGAACAGCACCACCTGCTGGTTGTGACGGTTTTTCAGC  >  CP009273/4446836‑4447374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.