New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	18493 =	61 (1.590)	8 (0.210)	6/304	NT	12.5%	coding (1005/1167 nt)	nhaA	sodium‑proton antiporter
	?	CP009273	18830 =	53 (1.420)					coding (116/906 nt)	nhaR	transcriptional activator of nhaA

GATTAACTGGGCGAAACTCGGTATCCTGGTCGGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGTCAGTAGCGTACTTAACGCCGCAGTGGTAGAAGGCGAGCCCATTCATCTTC  >  CP009273/18559‑19093                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                        gATTAACTGGGCGAAACTCGGTATCCTGGTCGGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACa                                                                                                                                                                                                                                                                      >  1:102847/1‑275 (MQ=255)             aaaccgcgggcgccTGTTCGGTGTTATTGCTTCGGCTGTAATTGGATATAGCTGGGTACGCGTTCGTTTTCGTCCATCATTTTGACAGGACGGTTTACCGTGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCt                                                                                                                                                                                                                                                          <  2:646340/263‑1 (MQ=255)                             tgcgggtttATCTCGTCTGCGGTTGTTGGTTTCTCCTGGTTTCGCGTTCTTTTTCGTCCATCAGTTTGACAGGACGGTTTACCGGGTAGCCATAAACGGCTCCCTTTTCATTTTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCaa                                                                                                                                                                                                                                          <  2:710433/267‑1 (MQ=255)                             gTCGGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGc                                                                                                                                                                                                                                            <  2:651844/273‑1 (MQ=255)                                  ttCTATCTCTCCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTCGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCaa                                                                                                                                                                                                                                     >  1:710443/1‑275 (MQ=255)                                    cTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACNGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCaaa                                                                                                                                                                                                                                    <  1:536302/274‑1 (MQ=255)                                     tATCGCTGCGGGGGTAATTGGATACAGGTGGTTACGCGTTCGTTTGCGTCCATTAGTTTGACATGACGGGTTAGCGGGAAGCCTTAAACGCCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCGGGGATGTCTATAAAGAAGGGTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAat                                                                                                                                                                                                                                   <  2:709788/274‑1 (MQ=255)                                            tCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTaaa                                                                                                                                                                                                                           >  1:163707/1‑275 (MQ=255)                                                                               tttGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTgg                                                                                                                                                                                         <  2:163704/274‑1 (MQ=255)                                                                                    gTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAAc                                                                                                                                                                                   <  1:348866/275‑1 (MQ=255)                                                                                                   aaaagtcctggcaaaatgatggacacaaacccacccgtaaccagctgtatccaattaccgccgaagagatagaaccgaccaggataccgagtttcgcccagttaatcagttctggatctacgctaccaaaggccaggctggcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATg                                                                                                                                                                    <  2:620367‑M2/102‑1 (MQ=255)                                                                                                      cgtcctgtcaaactgatggacgcaaacgaacgcgtaaccagctgtatccaattaccgccgaagagatagaaccgaccaggataccgagtttcgcccagttaatcagttctggatctacgctaccaaaggccaggctggcaataaagatagacntagtaaaaccgataccgGACAGATTCGAGCGCTGGACGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATg                                                                                                                                                                    >  1:620376‑M2/171‑272 (MQ=255)                                                                                                                       ggacgcaaacgaacgcgtaaccagctgtatccaattaccgccgaagagatagaaccgaccaggataccgagtttcgcccagttaatcagttctggatctacgctaccaaaggccaggctggcaataacgatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGACCGCCTGCAAGGCAAATTATTTAAACACACGGAGAGTGGTCTTGAAACCCACGAGCCGGGAGAACTGGTCTCTCGCTACGACGATAACATGTTCATCTTa                                                                                                                                                >  2:131738‑M2/154‑275 (MQ=255)                                                                                                                                                        gagaAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCGGGAAGAGCGCCTGCAAGGCAAATTATTAAAACGCAAGGGACTTGGTCTCGAACCCAGCGAGCTGGGAGACATGGTCTATCGCTATGCAGAGAAAATGTTCACCTTAAGCCAGGAACGGATGGatataacgaagtatagt                                                                                                               >  2:47984/1‑262 (MQ=255)                                                                                                                                                           acttGAGCTTGTATCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCaaa                                                                                                            <  2:102846/272‑1 (MQ=255)                                                                                                                                                               tatcATGTCTCATATCAATTACAACCACTGTTATTACTGCTGGCAGGTCTATAAAGAAGGTTCCGGGTTTGGCGCAGCGGAGGCGCTTTATTTAACTTCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAAt                                                                                                        <  1:407434/272‑1 (MQ=255)                                                                                                                                                                           tatCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCACCGAGATGGGAGAACTGGTCTATGGCTATGCCAGTAAAATGTTCACCTTAAGCCAGGAAAAGCTGGATAATGGGAACGATGCCAAAGAATCCAATGTCTTgg                                                                                            >  2:631986/1‑274 (MQ=255)                                                                                                                                                                               gaccaggataccgagtttcgcccagttaatcagttctggatctacgctaccaaaggccaggctggcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGc                                                                                                                                                                        >  1:316861‑M2/98‑195 (MQ=255)                                                                                                                                                                                   aggataccgagtttcgcccagttaatcagttctggatctacgctaccaaaggccaggctggcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATg                                                                                                                                                                    <  2:316855‑M2/102‑1 (MQ=255)                                                                                                                                                                                            tGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGga                                                                                                                                                                                       >  1:269082/1‑167 (MQ=255)                                                                                                                                                                                                ttACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAAc                                                                                                                                                                                   <  2:269077/167‑1 (MQ=255)                                                                                                                                                                                                  aCTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACa                                                                                                                                                                                                                                                                      >  2:29350/1‑82 (MQ=255)                                                                                                                                                                                                   cTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCa                                                                                                                                                                                                                       >  1:271060/1‑128 (MQ=255)                                                                                                                                                                                                      cTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGAtt                                                                                                                                                                                                                                                                  <  1:29350/82‑1 (MQ=255)                                                                                                                                                                                                      cTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGcc                                                                                                                                                                                                                                               >  1:468085/1‑101 (MQ=255)                                                                                                                                                                                                       tGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAggg                                                                                                                                                                                                                   <  2:271055/128‑1 (MQ=255)                                                                                                                                                                                                        ggCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAat                                                                                                                                                                                                                                   >  2:582280/1‑111 (MQ=255)                                                                                                                                                                                                          cATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCa                                                                                                                                                                                                                                           <  2:468078/101‑1 (MQ=255)                                                                                                                                                                                                            tGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAattatt                                                                                                                                                                                                                               <  1:582289/111‑1 (MQ=255)                                                                                                                                                                                                             gTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTTTTTGACGTTGGCGTGGCTGATGCACtt                                                                  >  1:51777/1‑267 (MQ=255)                                                                                                                                                                                                              tCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAatta                                                                                                                                                                                                                                 >  1:310795/1‑107 (MQ=255)                                                                                                                                                                                                               agaannnnaagGTTACGTGGTTGGCGCGGCGGAGGCGCTTTATTTAACTACACAAACCATTACCGGACAGATTCGAGGGCTGGAAGGGCGGCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTGGAAGCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCa                                                              <  2:51777/261‑1 (MQ=255)                                                                                                                                                                                                                  taAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTa                                                                                                                                                                                                                             <  2:310789/107‑1 (MQ=255)                                                                                                                                                                                                                   aaaGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAg                                                                                                                                                                                                 >  2:642759/1‑134 (MQ=255)                                                                                                                                                                                                                       aagGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAg                                                                                                                                                                                             <  1:642768/134‑1 (MQ=255)                                                                                                                                                                                                                        agGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAGAATGTTCACCTTAAGCCAGGAAATGCTGGatat                                                                                                                            >  2:204923/1‑198 (MQ=255)                                                                                                                                                                                                                        agGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACATTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTGGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGtaattt                                               >  2:617821/1‑270 (MQ=255)                                                                                                                                                                                                                          gTTCCGTGGTTGGCGCAGCGGAGGCGTTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCGCCTTAAGCCAGGNAATGCTGGNTATTGTGAACTATCGCAAAGAATCCAATTTCTTGTTTGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGTCAGTAGc                                             >  1:466659/1‑275 (MQ=255)                                                                                                                                                                                                                          gTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAatta                                                                                                                                                                                                                                 >  2:617452/1‑95 (MQ=255)                                                                                                                                                                                                                          gTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTACGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTAATGTTTGACGTTCGCTTTGCTGATGCACTTTCCAACCGCCTCTTCAgcat                                              >  2:708388/1‑271 (MQ=255)                                                                                                                                                                                                                          gTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATg                                                                                                                                    >  1:308820/1‑188 (MQ=255)                                                                                                                                                                                                                          acgctaccaaaggccaggctggcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGc                                                                                                                                                                        >  2:712376‑M2/55‑152 (MQ=255)                                                                                                                                                                                                                            tCCATGGTTGGCGCAGCGGAGGCACTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAGAATGTTCACCTTAAGCCAGGAAATGCTGGATATtgtg                                                                                                                        <  1:204927/198‑1 (MQ=255)                                                                                                                                                                                                                              taccaaaggccaggctggcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATg                                                                                                                                                                    <  1:712386‑M2/102‑1 (MQ=255)                                                                                                                                                                                                                              cGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGAtt                                                                                                                                                                                                                                                                  >  1:333057/1‑58 (MQ=255)                                                                                                                                                                                                                              cGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTa                                                                                                                                                                                                                             <  1:617461/95‑1 (MQ=255)                                                                                                                                                                                                                              cGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTgg                                                                                                                                <  2:308814/188‑1 (MQ=255)                                                                                                                                                                                                                                  gTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAg                                                                                                                                                                                                                                                              <  2:333051/58‑1 (MQ=255)                                                                                                                                                                                                                                          aagaggcaggcTTTATTTAACTCCACAAAACATTACAGGAGAGAGTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATGATTTAAACGGAAGGGACGTGGTCTCGAACCCAGCGAGNGGGGAGAACTGTTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCACACGCCTGGTCAGTAGCGTACTTAACGCCGCa                              <  1:654576/265‑1 (MQ=255)                                                                                                                                                                                                                                               gcaataaagatagacatagtaaaaccgataccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGTCAGTAGCGTACTTAACGCCGCAGTGGTa                        <  1:131739‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                                                 gcgcTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCt                                                                                                                                                  >  2:583924/1‑151 (MQ=255)                                                                                                                                                                                                                                                     tttatttaACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAg                                                                                                                                              <  1:583933/151‑1 (MQ=255)                                                                                                                                                                                                                                                             aCTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTAt                                                                                                                  >  2:75544/1‑171 (MQ=255)                                                                                                                                                                                                                                                              cTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACTAGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCGATCGCTATGCCGATAAAATGTTGACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTAACGTTGCCGTGGCTGATGAACTTCCCAACCGCCGGTTCATGAGCGTACTTACCGCCGCAGTCGTAGACGGctttctcttc         >  2:654567/1‑266 (MQ=255)                                                                                                                                                                                                                                                                 cacaAACCATTACCGGACAGATTCGAGCGCTGGaa                                                                                                                                                                                                                                                      >  2:429897/1‑35 (MQ=255)                                                                                                                                                                                                                                                                 cacaAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAgg                                                                                                                                                                                                                    >  2:148177/1‑69 (MQ=255)                                                                                                                                                                                                                                                                 cacaAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGga                                                                                                                                                                                       >  2:534019/1‑98 (MQ=255)                                                                                                                                                                                                                                                                 cacaAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCa                                                                                                              <  1:75545/171‑1 (MQ=255)                                                                                                                                                                                                                                                                   caAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGc                                                                                                                                             >  1:558967/1‑138 (MQ=255)                                                                                                                                                                                                                                                                     aaCCATTACCGGACAGATTCGAGCGCTGGAAGAgc                                                                                                                                                                                                                                                  <  1:429904/35‑1 (MQ=255)                                                                                                                                                                                                                                                                     aaCCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAat                                                                                                                                                                                                                                   <  1:658406/50‑1 (MQ=255)                                                                                                                                                                                                                                                                     aaCCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACg                                                                                                                                                                                                                <  1:148178/69‑1 (MQ=255)                                                                                                                                                                                                                                                                     aaCCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAAc                                                                                                                                                                                   <  1:534027/98‑1 (MQ=255)                                                                                                                                                                                                                                                                      aCCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGCTAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGTCAGTAGCGTACTTAACGCCGCAGTTGTAGAAGGCAAGCCCTTTCATCTTc  >  2:286828/1‑274 (MQ=255)                                                                                                                                                                                                                                                                       ccATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAgg                                                                                                                                         <  2:558958/138‑1 (MQ=255)                                                                                                                                                                                                                                                                         aTTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGc                                                                                                                                                                                                                                       >  1:700214/1‑42 (MQ=255)                                                                                                                                                                                                                                                                           taccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGc                                                                                                                                             >  1:112638‑M2/6‑130 (MQ=255)                                                                                                                                                                                                                                                                             ccgGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAat                                                                                                                                                                                                                                   <  2:700205‑M2/39‑1 (MQ=255)                                                                                                                                                                                                                                                                               gGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAgg                                                                                                                                         <  2:112637‑M2/129‑1 (MQ=255)                                                                                                                                                                                                                                                                                gACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGaaa                                                                                                                                      >  2:663748/1‑132 (MQ=255)                                                                                                                                                                                                                                                                                gACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGaaa                                                                                                                                      >  2:125567/1‑132 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                        GATTAACTGGGCGAAACTCGGTATCCTGGTCGGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTTATTTAACTCCACAAACCATTACCGGACAGATTCGAGCGCTGGAAGAGCGCCTGCAAGGCAAATTATTTAAACGCAAGGGACGTGGTCTCGAACCCAGCGAGCTGGGAGAACTGGTCTATCGCTATGCCGATAAAATGTTCACCTTAAGCCAGGAAATGCTGGATATTGTGAACTATCGCAAAGAATCCAATTTATTGTTTGACGTTGGCGTGGCTGATGCACTTTCCAAACGCCTGGTCAGTAGCGTACTTAACGCCGCAGTGGTAGAAGGCGAGCCCATTCATCTTC  >  CP009273/18559‑19093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.