Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	CP009273	481,433	IS5 (+) +4 bp	100%	coding (217‑220/648 nt)	acrR →	transcriptional repressor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	269666 =	NA (NA)	26 (0.590)	23/302	NT	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	CP009273	481433 =	0 (0.000)					coding (217/648 nt)	acrR	transcriptional repressor
*	?	CP009273	= 481436	0 (0.000)	40 (0.910)	32/302	NT	100%	coding (220/648 nt)	acrR	transcriptional repressor
	?	CP009273	= 571241	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGC  >  CP009273/481164‑481697                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                         gTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGgg                                                                                                                                                                                                                                                                     <  1:397379‑M1/275‑3 (MQ=255)  tacatacaTTCACAAATGGATGTAAATCCAACGCCTGTAACTTCACGACCATATGGAACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGgga                                                                                                                                                                                                                                                                    <  2:745295‑M1/275‑4 (MQ=255)        tgaaagccagatacaaggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggagaacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatatccccgcttattcgaacctaccCTAGAGCTTGAg                                                                                                                                                                                                                                                               >  1:284451‑M2/263‑274 (MQ=255)        tgaaagccagatacaaggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagaactccctacaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggcgaaaaaatcgactcaaacatgaagaaatgaaatgactgagtcagacgagaataatttccccgctnattcgcaacttccccctttcattatt                                                                                                                                                                                                                                                              >  2:532800‑M2/263‑263 (MQ=255)           tCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAANAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaa                                                                                                                                                                                                                                                           >  1:745303‑M1/1‑263 (MQ=255)                  tgtatgtaAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGNGGCTCTACGTCTTTTCTCATAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtcc                                                                                                                                                                                                                                                    <  1:627384‑M1/275‑20 (MQ=255)                        ggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcagctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                                          >  1:459516‑M2/247‑247 (MQ=255)                          ggttgctgaaaaacgataaccaacttgcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactagaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTg                                                                                                                                                                                                                                            <  1:446072‑M2/31‑1 (MQ=255)                            ttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcagagaagaatttccccgcttattcgcaccttccCTATAGCTTTAGAATCAGACAAAATTtcctttc                                                                                                                                                                                                                                          >  2:652651‑M2/243‑272 (MQ=255)                                      acgataaccaaggtgcgatgttattcacgctggccaaccggtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactgtggataacgcatgaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcgtattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc                                                                                                                                                                                                                                 <  1:516694‑M2/42‑1 (MQ=255)                                       tAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                                                                                                                                                <  1:6874‑M1/274‑40 (MQ=255)                                       gagacagcaactggtgatgttattcactcttgccaacctgtttcgggcggaccaaatgatacttaagtgggagagatctcaataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACtctc                                                                                                                                                                                                                               <  1:137233‑M2/44‑1 (MQ=255)                                        gatacccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaaggatacgtcagtgggagagaactcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACtctc                                                                                                                                                                                                                               <  1:295120‑M2/44‑1 (MQ=255)                                                  gggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagag                                                                                                                                                                                                                    <  1:652658‑M2/55‑1 (MQ=255)                                                         gttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataaagccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccatccCTAGAGCATGAGTATCAGGCAAAATTCCCTGACGATCCACTCTCAGTattaagagagtgag                                                                                                                                                                                                              >  2:137233‑M2/214‑270 (MQ=255)                                                            cGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTAAGTGAGATCTGGNAACTGTCANAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                                                                                                                                          >  1:551295‑M1/1‑214 (MQ=255)                                                             gAAAGACCAATAAGGAAGCGCAAGACACGGGCAAACCCATTCTCGATGTGGCTTGACGTCTTTTCTCACAGCAGGGGGTATAAGCCACCTCGCTGGGAGAGATTGCAAAAGCAGCGGGCGGTACGCGGGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                                                         <  2:41828‑M1/275‑63 (MQ=255)                                                                      gccaacctgtttcgggcggaccaagtgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                                                                                                                                         >  2:101273‑M2/201‑202 (MQ=255)                                                                          agaagCGCAAGAAACGCGCCAACTCATCCTCGATGTGGCGCTACGTCTTTTCTGACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                                                                                                                                            <  1:24860‑M1/275‑76 (MQ=255)                                                                                         accaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                                                                                                                                         >  2:311287‑M2/182‑183 (MQ=255)                                                                                                   acgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATc                                                                                                                                                                                                                                      >  1:482994‑M2/172‑208 (MQ=255)                                                                                                       cagtgggagagatctcactaaaaactgnggataacgccttaaatggctaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACtctc                                                                                                                                                                                                                               <  1:630783‑M2/44‑1 (MQ=255)                                                                                                       cagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTag                                                                                                                                                                                                                                                                       <  1:529816‑M2/4‑1 (MQ=255)                                                                                                       cagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCAct                                                                                                                                                                                                                                  <  2:482989‑M2/41‑1 (MQ=255)                                                                                                             gagagatctcactaaaaactggggataacgccttaaatggagaagaaacggtctaaataggctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGAt                                                                                                                                                          <  1:46134‑M2/113‑1 (MQ=255)                                                                                                                agatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                                          >  2:717342‑M2/159‑159 (MQ=255)                                                                                                                agatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGCGCTTGAGTATCAGGCAACATTCCCTGGCGATCCACTCTCAGTATTAAGCGAGATATTAATTCATGTTCTTGAATCCACGGTGACANAAaaacgacgtttattaatcttttat                                                                                                                                                      >  2:533182‑M2/159‑266 (MQ=255)                                                                                                                agatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCAACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGCCAGAAGAACGGCATCAACaattgaatgaa                                                                                                                                                      >  2:46134‑M2/159‑270 (MQ=255)                                                                                                                agatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcccagcttattcgcaccttccCTa                                                                                                                                                                                                                                                                        >  2:539483‑M2/159‑161 (MQ=255)                                                                                                                    ctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTAtt                                                                                                                                                                                                                         >  2:666400‑M2/155‑204 (MQ=255)                                                                                                                        ctaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGTTCCACTCTCAGTATTAaga                                                                                                                                                                                                                     <  1:666407‑M2/54‑1 (MQ=255)                                                                                                                                       aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagag                                                                                                                                                                                                                    >  1:9960‑M2/136‑190 (MQ=255)                                                                                                                                           ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGat                                                                                                                                                                                                                <  2:9960‑M2/59‑1 (MQ=255)                                                                                                                                                   aCCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGTAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcaccagtaagcgccgtcagaccagaaaagagaanttctttgtcc                                                                                                                    >  2:66240‑M1/1‑127 (MQ=255)                                                                                                                                                   aCCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                                                                                                                                       >  1:764735‑M1/1‑127 (MQ=255)                                                                                                                                                       cGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                                                                   <  2:764726‑M1/175‑53 (MQ=255)                                                                                                                                                        gCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcataaacttaccttcgccgacagtgaatttagcagtaagagccgtcagaccagaaaacagaattcctgtttcctccttt                                                                                                              >  2:659412‑M1/1‑122 (MQ=255)                                                                                                                                                        agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcngccgagaanaatttccccgctgattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAAGTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACACATGCGAATTTGTCGGAGAAATGGCtg                                                                                                              <  1:533187‑M2/157‑1 (MQ=255)                                                                                                                                                          tGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                                                                                                                                    >  2:76648‑M1/1‑120 (MQ=255)                                                                                                                                                            ggCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                                                                                                                                             >  2:344184‑M1/1‑118 (MQ=255)                                                                                                                                                              cGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                                                                                                                                                <  1:76648‑M1/155‑40 (MQ=255)                                                                                                                                                                agaTTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                                                         <  1:344188‑M1/176‑63 (MQ=255)                                                                                                                                                                      cAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGTCNTTTTAAAGNAAAGTCGGATTTATTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGgtaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttctccgacagtgaattcagcagtaagcgccgtcagac                                                                                                                                           <  1:540538‑M1/232‑125 (MQ=255)                                                                                                                                                                        aaaGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccct                                                                                                                                                                                                                                                  >  2:712035‑M1/1‑106 (MQ=255)                                                                                                                                                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCa                                                                                                                                                                                                                                                          >  2:342062‑M2/102‑118 (MQ=255)                                                                                                                                                                            cagcTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggca                                                                                           <  1:66240‑M1/274‑173 (MQ=255)                                                                                                                                                                             attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCa                                                                                                                                                                                                                                                      <  1:342066‑M2/21‑1 (MQ=255)                                                                                                                                                                              ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTaa                                                                                                                                                                                                                       >  2:24949‑M2/97‑148 (MQ=255)                                                                                                                                                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagaga                                                                                                                                                                                                                   <  1:24949‑M2/56‑1 (MQ=255)                                                                                                                                                                                                    tCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaa                                                                                                                                                                                                                                                        >  2:84753‑M1/1‑78 (MQ=255)                                                                                                                                                                                                       aCTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctg                                                                                                                                                                                                                                                 >  2:201191‑M1/1‑75 (MQ=255)                                                                                                                                                                                                        cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtcc                                                                                                                                                                                                                                                    <  1:84753‑M1/93‑20 (MQ=255)                                                                                                                                                                                                         tGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgtttta                                                             >  1:470467‑M1/1‑73 (MQ=255)                                                                                                                                                                                                         tGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttagccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatattcttgtccagcagggagcagattctgacatggcaaaacatggtggaagtcatntggcagattta                                                             >  2:83092‑M1/1‑73 (MQ=255)                                                                                                                                                                                                           gCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatat                                                                                                                                                                                                                                             <  1:201194‑M1/97‑27 (MQ=255)                                                                                                                                                                                                             aTTTTAATGACAAGTAGGATTTGTTCAGTTAGATCTGGTAACTGTAAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacctc                                                         <  1:202451‑M1/275‑207 (MQ=255)                                                                                                                                                                                                             aTTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                                                                                                                                          >  2:172433‑M1/1‑69 (MQ=255)                                                                                                                                                                                                                 tAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCTGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                                                                                                                                                      <  1:172433‑M1/114‑50 (MQ=255)                                                                                                                                                                                                                         aatgtaatgactgagtcagcggagaagagtttccccgcttattcgcaccttccCTTGAGCTTGAGTATCAGGCAAAATTCCNTGGCGATCNATTCTCAGTATTTAGAGAGATATTAAGTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTaaa                                              <  1:545963‑M2/221‑1 (MQ=255)                                                                                                                                                                                                                         aGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGgga                                                                                                                                                                                                                                                                    >  2:807029‑M1/1‑57 (MQ=255)                                                                                                                                                                                                                          gTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccacaaggctggaaac                                             >  1:389845‑M1/1‑56 (MQ=255)                                                                                                                                                                                                                             ggATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAATTAGggaaggt                                                                                                                                                                                                                                                                <  1:807038‑M1/60‑8 (MQ=255)                                                                                                                                                                                                                                      agtcagccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACa                                                                                                    >  1:252451‑M2/41‑207 (MQ=255)                                                                                                                                                                                                                                          agccgagaagaatttccccgcttattcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGca                                                                                                <  2:252447‑M2/171‑1 (MQ=255)                                                                                                                                                                                                                                             atttgggAATTGTCAGAATCTAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacnttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgct                         <  1:682710‑M1/272‑239 (MQ=255)                                                                                                                                                                                                                                              tCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggaggaagtcatcgaaccggtttaacccaaggctggtaatggccggcgaccttatccatg                         >  2:214635‑M1/1‑36 (MQ=255)                                                                                                                                                                                                                                                  ggAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg                                       <  1:214639‑M1/256‑225 (MQ=255)                                                                                                                                                                                                                                                   gAACTGTCAGAATCAAATATTGTTTAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgccgaccttatccgctggaaa                    <  1:659419‑M1/274‑244 (MQ=255)                                                                                                                                                                                                                                                       tGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaaccat                >  1:665501‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                                       tGTCAGAATCCAATATTGCTGAACTAGggaaggttcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                                                                                                                                           >  1:528420‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                                         tCAGAATCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                                                                                                                                       >  2:109138‑M1/1‑25 (MQ=255)                                                                                                                                                                                                                                                           aGAATCCAATATTAGTGAACTAGggaaggtgctaacaagtccctgatatcagatcatgtttgtcatctggagctatagaacagggttcatcatgagtcatcaacttaccttagacgaca                                                                                                                                                                       <  2:528415‑M1/119‑97 (MQ=255)                                                                                                                                                                                                                                                             aaTCCAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                                                                   <  1:109138‑M1/73‑53 (MQ=255)                                                                                                                                                                                                                                                                 cAATATTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                                                                                                                                                    >  2:751909‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                                                                    aattGGTGAAATAAggaaggtgcgaaaaagtccctgatatgagatcatgtttgtcatctggagccagagaacaggggtcatcatgagtcatcaacttaccttagccgacagtgaattcagcaggaagcgccgtcagaccagaaaagagattttcctgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaaccatgctacgcattcact  <  2:665494‑M1/274‑262 (MQ=255)                                                                                                                                                                                                                                                                     atTGGTGAACTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                                                                                                                                <  1:751918‑M1/116‑104 (MQ=255)                                                                                                                                                                                                                                                                            ccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGc                                                                                                                                    >  1:159445‑M2/3‑137 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                         GTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATATGGCACGAAAAACCAAACAAGAAGCGCAAGAAACGCGCCAACACATCCTCGATGTGGCTCTACGTCTTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGC  >  CP009273/481164‑481697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.