Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	CP009273	481,433	IS5 (+) +4 bp	100%	coding (217‑220/648 nt)	acrR →	transcriptional repressor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	269666 =	NA (NA)	26 (0.590)	23/302	NT	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	CP009273	481433 =	0 (0.000)					coding (217/648 nt)	acrR	transcriptional repressor
*	?	CP009273	= 481436	0 (0.000)	40 (0.910)	32/302	NT	100%	coding (220/648 nt)	acrR	transcriptional repressor
	?	CP009273	= 571241	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

TTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCTTTAGATTGCAGGTAAGCAACGGACGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGAAGTTTTGGGCTTTATTAGCAACGAAGTGATCAGCAAATACAGTCATATTCTGGGTTTC  >  CP009273/570999‑571504                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                         tttCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCAATGTCGACGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGAt                                                                                                                                                                                                                                         >  1:715105/1‑275 (MQ=255)                gTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGa                                                                                                                                                                                                                           <  2:219514/274‑1 (MQ=255)                  ctccGGCCATTACCATCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTTCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGTTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAg                                                                                                                                                                                                                        <  1:45314/273‑1 (MQ=255)                  cGCCGGCCCTTTAAAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAg                                                                                                                                                                                                                        <  2:715097/275‑1 (MQ=255)                    ccGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTTTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTGCAGATGACAAACATGATCTCATATCAGGGACTTGGTCTGACCTTCCTTAGTGAAGTAATTTTTGAAAAGAAG‑GTTGATTTTGTAAACAAAGAAAGTa                                                                                                                                                                                                                      >  1:436748/1‑275 (MQ=14)                       gCCATTACCAGCCGTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGACGGTAAGTTGATGACTACTTATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCATGGACTTGTTCGCACCTACCTTAGTGCAGTCATTTTTGTCAAGCAGTCGTGA‑TTTGTAATCAACGAACGTacaa                                                                                                                                                                                                                   >  2:6073/1‑272 (MQ=14)                                       gggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTg                                                                                                                                                                                                                                           >  1:471138/1‑235 (MQ=255)                                       gggTAAAAAGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTg                                                                                                                                                                                                                                           <  2:471133/235‑1 (MQ=255)                                        ggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTa                                                                                                                                                                                                  <  1:41487/275‑1 (MQ=255)                                                 gCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAACGTAGACATATTTTTGTTGCAGTAATAGAtt                                                                                                                                                                                           >  2:180244/1‑273 (MQ=255)                                                     gATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGtt                                                                                                                                                                                           <  1:180246/269‑1 (MQ=255)                                                                   tGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttttt                                                                                                                                                                                                           >  2:702889/1‑239 (MQ=255)                                                                      tttGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGAc                                                                                                                                                                    <  1:250863/275‑1 (MQ=255)                                                                       ttGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTttgttg                                                                                                                                                                                                       <  1:702897/239‑1 (MQ=255)                                                                       ttGCAAGGGCAGAANCTGCTCCATGAGGGACCAGAAAAGCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACt                                                                                                                                                                   <  2:609699/275‑1 (MQ=255)                                                                                 aGAATCTGCTCCATTCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGAGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGa                                                                                                                                                          <  1:203404/274‑1 (MQ=255)                                                                                     tCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGcc                                                                                                                                                     <  1:6073/275‑1 (MQ=255)                                                                                              tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttttt                                                                                                                                                                                                           >  1:290570/1‑212 (MQ=255)                                                                                              tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTAACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAATAGACATATTTTTGTTAAATTAATAGGTTGCAACTACATAAACATATTTTACTACTTCCTGCTCGTCCCAttnn                                                                                                                                              >  2:203401/1‑270 (MQ=18)                                                                                                  ggACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGCACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTttgttg                                                                                                                                                                                                       <  2:290566/212‑1 (MQ=255)                                                                                                        gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGt                                                                                                                                                                                            >  1:6296/1‑217 (MQ=255)                                                                                                            aTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCa                                                                                                                                                                                        <  2:6296/217‑1 (MQ=255)                                                                                                                                   cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGAttt                                                                                                                                                                                                                                       >  2:169402/1‑147 (MQ=255)                                                                                                                                       ctgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTa                                                                                                                                                                                                                                   <  1:169402/147‑1 (MQ=255)                                                                                                                                                         gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAg                                                                                                                                                                                                                        >  2:411947/1‑140 (MQ=255)                                                                                                                                                             aGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGa                                                                                                                                                                                                                    <  1:411952/140‑1 (MQ=255)                                                                                                                                                                            tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTAATATCAGGGACTTGTTCGCACCTTCCTTAGTGaa                                                                                                                                                                                                                                                                  <  1:533208/80‑1 (MQ=21)                                                                                                                                                                             cATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAg                                                                                                                                                                                                                                                   <  1:495083/94‑1 (MQ=255)                                                                                                                                                                                   gtaaccTTTTCTATGGCTCCAGATTACAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCTTATTGAAGTCATTTTTGTCAAGCAG‑GTTGAATTTGTAATCAACGAAAGTAGACATATGTTTGTTGAAGTAATAGGTTGCACATACATCAACAGATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCGTTAGATTGCAGGTAAGCAACGGAAGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGAAGttt                                                       <  2:793741/271‑1 (MQ=255)                                                                                                                                                                                      cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTaa                                                                                                                                                                                                                                  >  1:247726/1‑101 (MQ=255)                                                                                                                                                                                          gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCaa                                                                                                                                                                                                                              <  2:247722/101‑1 (MQ=255)                                                                                                                                                                                          gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAAc                                                                                                                                                                             >  1:374170/1‑150 (MQ=255)                                                                                                                                                                                              tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACatat                                                                                                                                                                         <  2:374165/150‑1 (MQ=255)                                                                                                                                                                                                     ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttttt                                                                                                                                                                                                           >  2:632373/1‑109 (MQ=255)                                                                                                                                                                                                     ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGc                                                                                                                                                      >  2:143858/1‑162 (MQ=255)                                                                                                                                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTttgttg                                                                                                                                                                                                       <  1:632380/109‑1 (MQ=255)                                                                                                                                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCa                                                                                                                                                  <  1:143858/162‑1 (MQ=255)                                                                                                                                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTATTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttt                                                                                                                                                                                                             >  2:249393/1‑98 (MQ=255)                                                                                                                                                                                                                  aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTATTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTttgt                                                                                                                                                                                                         <  1:249397/98‑1 (MQ=255)                                                                                                                                                                                                                            atCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCttt                                                                                                                             >  1:232413/1‑164 (MQ=255)                                                                                                                                                                                                                                gggACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACatat                                                                                                                                                                                                               >  2:730806/1‑78 (MQ=255)                                                                                                                                                                                                                                gggACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCTTTAGAt                                                                                                                         <  2:232409/164‑1 (MQ=255)                                                                                                                                                                                                                                gggACTTGTTCGCACATTCCTTAGTGAATGCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCTTTAg                                                                                                                           >  1:555507/1‑162 (MQ=255)                                                                                                                                                                                                                                 ggACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGa                                                                                                                                        >  1:669475/1‑148 (MQ=255)                                                                                                                                                                                                                                    cTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttttt                                                                                                                                                                                                           <  1:730814/78‑1 (MQ=255)                                                                                                                                                                                                                                     ttGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCt                                                                                                                                    <  2:669468/148‑1 (MQ=255)                                                                                                                                                                                                                                      tGTTCGTACCTTCCTTAGTTAATTCATTTTTTTCAAGCAG‑TTTGATTTTGTAATCAACTAAAGTAGACATATTTTTGTTGAATTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCCATATCCTTACCTTTAGATTGCAGGTAAGCAACGGACGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGAAGTTTTGGGCTTTATTAGCAACGAAGTGATCAGCAAATACAGTCATATTCTGGGtt    <  1:171507/275‑1 (MQ=255)                                                                                                                                                                                                                                      tGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCAc                                                                                                                                                                                       >  2:309596/1‑96 (MQ=255)                                                                                                                                                                                                                                       gTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATAttttt                                                                                                                                                                                                           >  2:449221/1‑75 (MQ=255)                                                                                                                                                                                                                                        ttCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTTATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGNACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCTTTAGATTGCAGGTAAGCAACGGACGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGAAGTTTTGGGCTTTATTAGCAACGAAGTGCGCAGCGAATACAGTCATATTCTGGGTTTc  <  1:564771/275‑1 (MQ=255)                                                                                                                                                                                                                                          cGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTAc                                                                                                                                                                                   <  1:309600/96‑1 (MQ=255)                                                                                                                                                                                                                                           gCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTttgttg                                                                                                                                                                                                       <  1:449226/75‑1 (MQ=255)                                                                                                                                                                                                                                             aCCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAAt                                                                                                                                                                                                                                 >  1:710444/1‑47 (MQ=255)                                                                                                                                                                                                                                              ccttctttAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTNGACATATTTTTGTTGAAGTCATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACGCCAAGATCCTTACCTGTAGATTGCAGGTAAGCAACGGACGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGACGTTTTGGGCTTTATTAGCAACGAAGTGa                               <  1:629527/240‑1 (MQ=255)                                                                                                                                                                                                                                                 tccttAGTGAAGTCATTTTTGTCAAGCAG‑GTTGAttt                                                                                                                                                                                                                                       >  2:10902/1‑37 (MQ=255)                                                                                                                                                                                                                                                 tccttAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAAc                                                                                                                                                                                                                             <  2:710436/47‑1 (MQ=255)                                                                                                                                                                                                                                                  ccttAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTaa                                                                                                                                                                                                                                  >  2:459553/1‑41 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                         TTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAAGTCATTTTTGTCAAGCAG‑GTTGATTTTGTAATCAACGAAAGTAGACATATTTTTGTTGAAGTAATAGGTTGCACCTACATCAACATATTTGACTAAGTCCTGATCGCCCCATACTCCAAGATCCTTACCTTTAGATTGCAGGTAAGCAACGGACGGACGCAGACCGAAATCGAACTGATATTGTGCAACAGCTTCGAAGTTTTGGGCTTTATTAGCAACGAAGTGATCAGCAAATACAGTCATATTCTGGGTTTC  >  CP009273/570999‑571504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.