New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1196562 =	41 (1.020)	4 (0.110)	3/278	NT	11.0%	intergenic (‑74/‑391)	xisE/ymfI	e14 prophage; putative excisionase/e14 prophage; uncharacterized protein
	?	CP009273	1196651 =	28 (0.780)					intergenic (‑163/‑302)	xisE/ymfI	e14 prophage; putative excisionase/e14 prophage; uncharacterized protein

TTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTCGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGTCAGCCTCAACCTTAACCCGCGTGCGCTGAGCCGCATTCACCA  >  CP009273/1196295‑1196835                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                   tttttCTTGATTACAGTTGTTACCAACTCCCCAACTAACTCGTCGTCCTCACGCACTCGCCATAACCGGCCTTGTTTCACGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACa                                                                                                                                                                                                                                                                             <  1:689249/275‑1 (MQ=255)                      aCCAACTCCCCAACTAACTCGGCGTCCTCACGCACTCGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCcac                                                                                                                                                                                                                                                        <  1:606237/275‑1 (MQ=255)                                                                         tGTTTAAGGGCCGGTGGACAAAATCAATTTTGTTTATCATTACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtctt                                                                                                                                                                                                       <  2:355013/273‑1 (MQ=255)                                                                           tttCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTAATCCGGGGATAc                                                                                                                                                                                                           >  1:355019/1‑267 (MQ=255)                                                                           tttCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTNAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTctct                                                                                                                                                                                                   >  1:563752/1‑275 (MQ=255)                                                                                       gantgcggctcagcgcacgcgggttaaggttgaggctgacaatcgaccttctgtggatacccacccgcctggtgtgcaaccttcgccaggcaccgggggcacccgacaccacaactttatgctgtgtgtagtcttggcggtaccagttttttcctttttcctttctggtaccgccctttttACaaa                                                                                                                                                                                                                                                                                >  1:523826‑M1/182‑186 (MQ=255)                                                                                          aCAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACTCACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCGTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg                                                                                                                                                                                    <  1:311994/275‑1 (MQ=255)                                                                                                        gCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATActc                                                                                                                                                                                                         >  2:292245/1‑240 (MQ=255)                                                                                                            aGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttct                                                                                                                                                                                                     <  1:292250/240‑1 (MQ=255)                                                                                                                  ggttgaggcgaacaatcgaccttctgtggatacccacccgcctggtgtgcaaccttcgccaggcaccgggggcacccgacaccacaactttatgctgtgtgtagtcttggcggtaccagttttttccttagtcctttctggtaccgccctttttACa                                                                                                                                                                                                                                                                                  >  1:670680‑M1/155‑157 (MQ=255)                                                                                                                                              ttACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTg                                                                                                                                                                                                  >  1:612121/1‑209 (MQ=255)                                                                                                                                              ttACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGAGTTACCAGAAAGGACTAAGGAAAAAANTACTACGTCCAACACTAca‑cccat                                                                                                                               >  2:434744/1‑274 (MQ=255)                                                                                                                                                  ttCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGtttt                                                                                                                                                                                              <  2:612108/209‑1 (MQ=255)                                                                                                                                                                 cagcCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGCAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGGTATTAACCCGTCATcc                                                                                                                                                                                                                   >  1:135121/1‑173 (MQ=255)                                                                                                                                                                   gcCCATTTGTCAAGATTTAACATTTGTAGCTTATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGt                                                                                                          <  1:367880/275‑1 (MQ=255)                                                                                                                                                                     ccATTCTTCCAGAGTTATCATTTGAAGCATAGGCGATCACTTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCATGTACGGTCGGTTAGTTTCTCCACAGAACAGAGTAGAGCACCTGAGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgggg                                                                                                                                                                                                               <  2:135120/173‑1 (MQ=255)                                                                                                                                                                                     aaCATTTGAAGCATATGCGATGAGGTTACTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATg                                                                                                                                                                                                                                           >  1:515485/1‑129 (MQ=255)                                                                                                                                                                                     aaCATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATgg                                                                                                                                                                                                                                          >  1:635528/1‑130 (MQ=255)                                                                                                                                                                                         tttGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTc                                                                                                                                                                                                                                       <  2:515476/129‑1 (MQ=255)                                                                                                                                                                                         tttGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCg                                                                                                                                                                                                                                      <  2:635514/130‑1 (MQ=255)                                                                                                                                                                                                  tatGCGCTCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATc                                                                                                                                                                                                                                                 >  2:493416/1‑110 (MQ=255)                                                                                                                                                                                                      cGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAACCAGAGAACAGCACATGTGGCCACAGCTAACAGGa                                                                                                                                                                                                                                             <  1:493425/110‑1 (MQ=255)                                                                                                                                                                                                          cACCTTATTACTACACTAACTGCACAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAACACCtg                                                                                                                                                                                                                                                               >  1:510815/1‑88 (MQ=255)                                                                                                                                                                                                           aCCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTATGTTTTGTAAAACGGGAGGTACCAGAAAGGACTACGGAAAAAACTGGTACCGCCAAGCCTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGACCCCGGTGGCTGGCAAAGGTTGCAAACCAGGCgggggg                                                                  >  1:208286/1‑275 (MQ=255)                                                                                                                                                                                                              ttattaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAACACCTGTGGc                                                                                                                                                                                                                                                           <  2:510806/88‑1 (MQ=255)                                                                                                                                                                                                               tattaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGc                                                                                                                                                                                                                                                           >  1:322286/1‑87 (MQ=255)                                                                                                                                                                                                               tattaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCggagtgagat                                                              >  2:80106/1‑267 (MQ=255)                                                                                                                                                                                                               tattaCTACACTAACAGCTTAATCTCAGAATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAAc                                                                                                                                                                                                                            >  1:502927/1‑118 (MQ=255)                                                                                                                                                                                                                attaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGAGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGCTGCCTGGCGAAAGTTGCACACCAATCggggggtgatc                                                             >  2:653293/1‑270 (MQ=255)                                                                                                                                                                                                                   actacACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCcaca                                                                                                                                                                                                                                                       <  2:322280/87‑1 (MQ=255)                                                                                                                                                                                                                   actacACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGt                                                                                                                                                                                                                        <  2:502918/118‑1 (MQ=255)                                                                                                                                                                                                                       cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGCTACTCTTCTCTGTTTTGt                                                                                                                                                                                            >  2:206551/1‑142 (MQ=255)                                                                                                                                                                                                                       cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTg                                                                                                                                                                                             >  2:628010/1‑141 (MQ=255)                                                                                                                                                                                                                       cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAgg                                                                         >  2:161053/1‑256 (MQ=255)                                                                                                                                                                                                                           aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaaa                                                                                                                                                                                        <  1:206553/142‑1 (MQ=255)                                                                                                                                                                                                                           aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaa                                                                                                                                                                                         <  1:628024/141‑1 (MQ=255)                                                                                                                                                                                                                           aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCggg                                                                     <  1:161055/256‑1 (MQ=255)                                                                                                                                                                                                                               gCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGAGCGGTACCAGAACGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACCACA‑CATAAAGTTGTGGTGACGGGTGCCCCCGGTGCCTGACGAAGATTGCACACAAGGCTTGTGGGTATCCACaaaatttctatt                                              >  2:590640/1‑267 (MQ=255)                                                                                                                                                                                                                                 ttATTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCACTGTTCTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGt                                            <  1:653307/275‑1 (MQ=255)                                                                                                                                                                                                                                  tAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGTc                                           <  1:434751/275‑1 (MQ=255)                                                                                                                                                                                                                                               tCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTctct                                                                                                                                                                                                   >  2:57769/1‑111 (MQ=255)                                                                                                                                                                                                                                                cttagtcctttctggtaccgccctttttACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAAccc                                                                                                                                                                                                                          <  2:490859‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                                                  tagtcctttctggtaccgccctttttACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAAccc                                                                                                                                                                                                                          <  2:332784‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                                                   cccTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt                                                                                                                                                                                               <  1:57770/111‑1 (MQ=255)                                                                                                                                                                                                                                                    gtcctttctggtaccgccctttttACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCa                                                                                                                                                                                                                      >  1:490868‑M1/25‑87 (MQ=255)                                                                                                                                                                                                                                                     cTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACGACA‑CACAGCATAAAGTTGTNGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGTCAGCCTCAACCTTAACAcgc                        >  1:580538/1‑275 (MQ=255)                                                                                                                                                                                                                                                      cctttctggtaccgccctttttACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCa                                                                                                                                                                                                                      >  1:332790‑M1/23‑85 (MQ=255)                                                                                                                                                                                                                                                                       tctcCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGTGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTa                                                                                                                                       >  2:552967/1‑147 (MQ=255)                                                                                                                                                                                                                                                                           cacaAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAAc                                                                                                                                                        >  2:307080/1‑126 (MQ=255)                                                                                                                                                                                                                                                                           cacaAAACAGAGAAGAGCACCTGGGGCCACAGATATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGTAAAAAACTGGTCCCGCCAAGACTaca‑ca                                                                                                                                  <  1:552978/147‑1 (MQ=255)                                                                                                                                                                                                                                                                            ACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGTCAGCCTCAACCTTAACCCGCGTGCGCTGAGCCGCATTcacca  >  1:80107‑M1/1‑274 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                   TTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTCGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACA‑CACAGCATAAAGTTGTGGTGTCGGGTGCCCCCGGTGCCTGGCGAAGGTTGCACACCAGGCGGGTGGGTATCCACAGAAGGTCGATTGTCAGCCTCAACCTTAACCCGCGTGCGCTGAGCCGCATTCACCA  >  CP009273/1196295‑1196835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.