New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1775228	15 (0.370)	3 (0.080)	3/294	NT	19.9%	coding (571/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit
	?	CP009273	= 1775292	10 (0.260)					coding (635/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit

AACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAA  >  CP009273/1774959‑1775496                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              aaCTGAATGCGGCGCTGGTGAACTATGCCACGGCGGTGTATATGGTCGATGGTCACATTTGCGCCGAACACCGGAGGTATGGCGGGTTAGCGTTCGCTCAGGAACAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagc                                                                                                                                                                                                                                                                          <  1:452072/275‑1 (MQ=255)                                                 aTGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGNACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAATGCAAAACGTGTGGTTTGCGTC‑GGTCGTGGACTGGCGGAGCAGGa                                                                                                                                                                                                                          <  1:545466/274‑1 (MQ=255)                                                                   aaCACCGGATGTATGGCGTGTTCGTGTTCTCTCAGGAAAAGCACACCAGCACGCTGGCGATCTTTACCCTTGCACCCGGTGTTCAGGGACCTTGCACCCGTGGTCCCTTTAATCCTTGCCCGACAGAAACTGTATCGTATATTGCCCGGCGTCTTGAAATTCTATGTCGGGAACGCAGCACGAAAGCCGCAACGTGGGTGGATACGAGCAAGGCAAACCGTCTGGTAGG‑GTCTGGTCGTGGAGTGGCGGGGCAGGATGCCCCACAAAttggtaca                                                                                                                                                                                                       >  2:669576/1‑268 (MQ=255)                                                                   aaCACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgtttggctttgctccggctgt                                                                                                                                                                                                         >  1:347854‑M1/1‑204 (MQ=255)                                                                                                                                                            ccGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTg                                                                                                                                                                                                                                                       >  2:205197/1‑139 (MQ=255)                                                                                                                                                              gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgtt                                                                                                                                                                                                                           >  1:31593‑M1/1‑113 (MQ=255)                                                                                                                                                              gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaa                                                                                                                                                                                                                                                                        >  1:368947/1‑120 (MQ=255)                                                                                                                                                                gCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCgt                                                                                                                                                                                                                                                   <  1:205199/139‑1 (MQ=255)                                                                                                                                                                  aCCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgttttgc                                                                                                                                                                                                                       <  2:31592‑M1/165‑57 (MQ=255)                                                                                                                                                                  aCCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaaagca                                                                                                                                                                                                                                                                    <  2:368940/120‑1 (MQ=255)                                                                                                                                                                                 catcaGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTTAGCAAAGCAAAACGTGTGGTTGGCGGC‑GGCCGTGGACTggc                                                                                                                                                                                                                                   >  2:650267/1‑137 (MQ=255)                                                                                                                                                                                     aGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGgcggcg                                                                                                                                                                                                                               <  1:650281/137‑1 (MQ=255)                                                                                                                                                                                         cccGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCAGAtc                                                                                 >  1:9798/1‑275 (MQ=255)                                                                                                                                                                                                                 tGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGgcgc                                                                                                                                                                                                                              >  2:339931/1‑110 (MQ=255)                                                                                                                                                                                                                     ccGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGa                                                                                                                                                                                                                          <  1:339937/110‑1 (MQ=255)                                                                                                                                                                                                                       gcgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCTGGATGAACTAAAAATGGTACACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGGTCTCTAcc                                                                           <  1:649035/251‑1 (MQ=255)                                                                                                                                                                                                                        cgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCgg                                                                                                     >  1:244245/1‑224 (MQ=255)                                                                                                                                                                                                                            aTGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCgtg                                                                                                 <  2:244242/224‑1 (MQ=255)                                                                                                                                                                                                                                                    tggaggaaGCCGGAAGAGGAGTGGACCTGAGAAAAGCAAATCGTGTGGTTGGCTTC‑GGTCGTGGACTGGCGTCGCAGGATGACCTAAAAATGGTCCACGAACTGGGGGCGGTGCTGAATGCTGAAGTCGGCTTTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCa                      <  2:9798/269‑1 (MQ=255)                                                                                                                                                                                                                                                                         acagccggagCAAAGCCAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATggtccacgctgcttgcggctttcgcacggcgttcgcgacagagaatttcatgacgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggtgcacggttcctgaacaccgggtgcaagggtaatgatcgccagcgggctgttgatcttttcctgagcgaacgctaacccgccatacatccggtgtt  >  1:347854‑M2/5‑70 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              AACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAA  >  CP009273/1774959‑1775496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.