New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1775228	15 (0.370)	3 (0.080)	3/294	NT	19.9%	coding (571/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit
	?	CP009273	= 1775292	10 (0.260)					coding (635/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit

AACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGAT  >  CP009273/1775025‑1775551                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                    aaCACCGGATGTATGGCGTGTTCGTGTTCTCTCAGGAAAAGCACACCAGCACGCTGGCGATCTTTACCCTTGCACCCGGTGTTCAGGGACCTTGCACCCGTGGTCCCTTTAATCCTTGCCCGACAGAAACTGTATCGTATATTGCCCGGCGTCTTGAAATTCTATGTCGGGAACGCAGCACGAAAGCCGCAACGTGGGTGGATACGAGCAAGGCAAACCGTCTGGTAGG‑GTCTGGTCGTGGAGTGGCGGGGCAGGATGCCCCACAAAttggtaca                                                                                                                                                                                                                                                              >  2:669576/1‑268 (MQ=255)                                                                                                                       cccGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCAGAtc                                                                                                                                        >  1:9798/1‑275 (MQ=255)                                                                                                                                                     gcgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCTGGATGAACTAAAAATGGTACACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGGTCTCTAcc                                                                                                                                  <  1:649035/251‑1 (MQ=255)                                                                                                                                                      cgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCgg                                                                                                                                                            >  1:244245/1‑224 (MQ=255)                                                                                                                                                          aTGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCgtg                                                                                                                                                        <  2:244242/224‑1 (MQ=255)                                                                                                                                                                                  tggaggaaGCCGGAAGAGGAGTGGACCTGAGAAAAGCAAATCGTGTGGTTGGCTTC‑GGTCGTGGACTGGCGTCGCAGGATGACCTAAAAATGGTCCACGAACTGGGGGCGGTGCTGAATGCTGAAGTCGGCTTTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCa                                                                             <  2:9798/269‑1 (MQ=255)                                                                                                                                                                                                  gcgggaggtcgggagaAAAGGAAAACGTGTGGTTGGCGTG‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGcc                                                              <  2:81531/262‑1 (MQ=255)                                                                                                                                                                                                       acagccggagCAAAGCCAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATggtccacgctgcttgcggctttcgcacggcgttcgcgacagagaatttcatgacgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggtgcacggttcctgaacaccgggtgcaagggtaatgatcgccagcgggctgttgatcttttcctgagcgaacgctaacccgccatacatccggtgtt                                                         >  1:347854‑M2/5‑70 (MQ=255)                                                                                                                                                                                                               agcaaagcaaAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGt                                                                  >  1:81532/1‑257 (MQ=255)                                                                                                                                                                                                                     gcaaaACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATggtccacgctgcttgcggctttcgcacggcgttcgcgacagagaatttcatgacgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggt                                                                                                                                                        <  2:31592‑M2/165‑110 (MQ=255)                                                                                                                                                                                                                         aaCGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATggtccacgctgcttgcggctttcgcacggcgttcgcgacagagaatttcatgacgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggtgcac                                                                                                                                                    >  1:31593‑M2/1‑52 (MQ=255)                                                                                                                                                                                                                                                              aGGATGTCCTAAAAATGGTCCAGGAACTGGCTGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCTNGAACTGGANGGAGCGTGAACGCTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAAGTATGCCGACTACGGTCTGGTGGGCGa   <  1:486183/274‑1 (MQ=255)                                                                                                                                                                                                                                                               gtaTGACCTAAAAATGGTCCGTGAACTTGCGGCGGTGCTGAATGCTGAAGTCGGCTTTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGat  <  1:344518/272‑1 (MQ=255)                                                                                                                                                                                                                                                                     ccTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGc                                                                                                                                                                                                     >  1:459758/1‑73 (MQ=255)                                                                                                                                                                                                                                                                         aaaaTGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCgaga                                                                                                                                                                                                 <  2:459751/73‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                    AACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTC‑GGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGAT  >  CP009273/1775025‑1775551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.