New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2284708	48 (1.200)	10 (0.260)	5/296	NT	17.3%	noncoding (77/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	CP009273	= 2284743	50 (1.300)					noncoding (112/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site

GCTGGATGTTCTGCACGAGCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCT  >  CP009273/2284452‑2284976                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                             gggcgATGTNCTGCACGAGCTGGCAAAGGGGCTGTCTAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTAt                                                                                                                                                                                                                                                            <  2:275977/271‑1 (MQ=255)            tccacaAGCTGGCCAAGGGGCTTTCAAATAAGCTGATTGCCTCGGTGTTTAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCACTCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTaca                                                                                                                                                                                                                                                  <  2:197386/272‑1 (MQ=255)                   gCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACACTAAAAATAGCCCGATGGATTTATGATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtttt                                                                                                                                                                                                                                           >  1:380510/1‑274 (MQ=255)                                                  gCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCNCCATTCTGTTCCTGCAACAGCGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                                                                                                                                                            <  1:559069/274‑1 (MQ=255)                                                   ccTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACCCCGCATCCgg                                                                                                                                                                                                          >  1:278459/1‑275 (MQ=255)                                                          gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAc                                                                                                                                                                                                   <  1:144093/275‑1 (MQ=255)                                                             gAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCTCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGAGTTCACGCCGCATCCGGCATAAACTaa                                                                                                                                                                                                >  1:406780/1‑275 (MQ=255)                                                              aaTATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTa                                                                                                                                                                                                                                                    >  2:228967/1‑222 (MQ=255)                                                                  tttCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTAcaca                                                                                                                                                                                                                                                <  1:228969/222‑1 (MQ=255)                                                                        aGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACGGCCTGATGCGCTACCCTTATCAGGCCTACTTGGATCGACCAATTTTTTCAATTTCCACAATTTTTTATGCCGTATAAGGATTGCACGCCGCATCCGGCATACACTAAGCGCACtttt                                                                                                                                                                                      >  2:715734/1‑273 (MQ=255)                                                                               agctaaaGTNCATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACCCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGt                                                                                                                                                                              <  2:278454/271‑1 (MQ=255)                                                                                           tatTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATAAGGCCTACGTGGATCGAACAATTTATTGAATTTACACAATTTTGTAGGCGGGAGAAGGCGATCACGCCCCATCCGGCAGAAACTAAGCGGACGTGGTAAACATTCTAGCCCGGTg                                                                                                                                                                   >  2:649369/1‑274 (MQ=38)                                                                                               cGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCTGCATAAACTAAGCGCACTAATTCAACATTCAAAccctttttcatc                                                                                                                                                              >  2:562607/1‑266 (MQ=37)                                                                                                                    aaTGTCCGCTCTGGAGGGGCGGCCACCATTCTGTTACTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTAACATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCATCTTtttatt                                                                                                                                         <  1:715748/275‑1 (MQ=255)                                                                                                                                cgcgTGGCGGCCACCATTCTGTTCCTGGAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATAACCATCGGACCTCTTTTTATTTACTCTCCTacg                                                                                                                             >  1:424592/1‑275 (MQ=255)                                                                                                                                         gcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGAAAAACGCAAAACTGCCTGATGAGCTACGCTTATCAGGCCTACGTGGATCGATAAATTTATTGAATTTACACAATTTTGTAGGCCGGCAAAGGCGTTCACGCCGCAACCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGACCGATGGCATCACCATCGGGCATCTTTTTATTTACTCTCCAGCGGCGACAAAt                                                                                                                    >  1:262239/1‑275 (MQ=255)                                                                                                                                           caccaTTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATACACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGaacaaagt                                                                                                                  >  1:444988/1‑268 (MQ=255)                                                                                                                                                        cTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACNCTTATCAGGCCTACGTGGAGCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTgcg                                                                                                     <  1:562619/275‑1 (MQ=255)                                                                                                                                                            aacaacGCGGGGCACAATAAAAATAGCCCGATGGACTTAGCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCAt                                                                                                                                                               <  1:412310/213‑1 (MQ=255)                                                                                                                                                               aacGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataa                                                                                                                                                                                                                                                         >  2:411058‑M1/1‑99 (MQ=255)                                                                                                                                                                   cgGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaattg                                                                                                                                                                                                                                                     <  1:411065‑M1/120‑26 (MQ=255)                                                                                                                                                                        cacaATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATATTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAAt                                                                                     <  1:649383/275‑1 (MQ=255)                                                                                                                                                                          caATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTGGTCAACAGTCTAGc                                                                                                                                                                         <  1:208301/189‑1 (MQ=255)                                                                                                                                                                                  attgCCCGATGGATTTATCATAGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCTCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACg                                                                            <  1:244669/271‑1 (MQ=255)                                                                                                                                                                                    aGCCCGATGGATTTAGCATCGGGCTGAGATTTAGGAAAAACGTAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATGTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                                                                                                                                                                              <  2:684617/142‑1 (MQ=21)                                                                                                                                                                                     gCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAAtt                                                                                                                                                                                                                                                      >  1:278770/1‑101 (MQ=255)                                                                                                                                                                                     gCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTtttatt                                                                                                                                         >  2:120695/1‑210 (MQ=255)                                                                                                                                                                                       ccGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcgg                                                                                                                            >  2:271414/1‑221 (MQ=255)                                                                                                                                                                                         gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTaca                                                                                                                                                                                                                                                  <  2:278765/101‑1 (MQ=255)                                                                                                                                                                                         gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTAct                                                                                                                                     <  1:120696/210‑1 (MQ=255)                                                                                                                                                                                           tGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGAc                                                                                                                        <  1:271418/221‑1 (MQ=255)                                                                                                                                                                                                       cGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaa                                                                                                                                                                                                                                                        >  2:291331‑M1/1‑59 (MQ=255)                                                                                                                                                                                                       cGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataa                                                                                                                                                                                                                                                         >  2:531813‑M1/1‑59 (MQ=255)                                                                                                                                                                                                       cGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATgg                                                                                                                                                                  >  1:614989/1‑167 (MQ=255)                                                                                                                                                                                                       cGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTGATCAGGCCTACaaaattgtgtaaattcaataaa                                                                                                                                                                                                                                                        >  1:706688‑M1/1‑59 (MQ=255)                                                                                                                                                                                                         ggCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAAt                                                                                                                                                                                                                                                                >  2:122612/1‑71 (MQ=255)                                                                                                                                                                                                           cTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACgcg                                                                                                                                                                                                                                                                           <  2:646954/58‑3 (MQ=255)                                                                                                                                                                                                           cTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaattga                                                                                                                                                                                                                                                    <  1:291336‑M1/81‑27 (MQ=255)                                                                                                                                                                                                           cTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaattg                                                                                                                                                                                                                                                     <  1:531822‑M1/80‑26 (MQ=255)                                                                                                                                                                                                           cTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATc                                                                                                                                                              <  2:614976/167‑1 (MQ=255)                                                                                                                                                                                                             gagaTTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTAt                                                                                                                                                                                                                                                            <  1:122613/71‑1 (MQ=255)                                                                                                                                                                                                                    aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaa                                                                                                                                                                                                                                                        >  2:188055‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                    aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa                                                                                                                                                                                                                                                                             <  2:297444‑M1/47‑2 (MQ=255)                                                                                                                                                                                                                    aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATg                                                                                                                                                                   >  1:257805/1‑153 (MQ=255)                                                                                                                                                                                                                        cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACaaaattgtgtaaattcaataaattga                                                                                                                                                                                                                                                    <  1:188057‑M1/68‑27 (MQ=255)                                                                                                                                                                                                                        cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCAt                                                                                                                                                               <  2:257802/153‑1 (MQ=255)                                                                                                                                                                                                                          aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGtt                                                                                                                                                                                                                        >  1:234970/1‑94 (MQ=255)                                                                                                                                                                                                                          aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTaa                                                                                                                                                                                                >  2:469410/1‑118 (MQ=255)                                                                                                                                                                                                                           aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCa                                                                                                                                                             >  2:612461/1‑152 (MQ=255)                                                                                                                                                                                                                              cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCAcg                                                                                                                                                                                                                    <  2:234968/94‑1 (MQ=255)                                                                                                                                                                                                                              cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAgcgc                                                                                                                                                                                            <  1:469417/118‑1 (MQ=255)                                                                                                                                                                                                                               aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCAt                                                                                                                                                         <  1:612474/152‑1 (MQ=255)                                                                                                                                                                                                                                      ccTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGaa                                                                                                                                                                                                                                                        >  1:413171/1‑50 (MQ=255)                                                                                                                                                                                                                                       cTGATGCGCTACGCTTATCAGGCCTACaaaagcgtgcaaattcaataca                                                                                                                                                                                                                                                        >  1:53182‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                          aTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTa                                                                                                                                                                                                                                                    <  2:413164/50‑1 (MQ=255)                                                                                                                                                                                                                                                tACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAAtt                                                                                                                                                                                                                                                      >  2:385360/1‑42 (MQ=255)                                                                                                                                                                                                                                                    cTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTaca                                                                                                                                                                                                                                                  <  1:385367/42‑1 (MQ=255)                                                                                                                                                                                                                                                           ggCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTa                                                        <  1:430905/221‑1 (MQ=255)                                                                                                                                                                                                                                                            gCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGcc                                                                                                                                                   >  2:505462/1‑129 (MQ=255)                                                                                                                                                                                                                                                            gCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCCATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCgctgctgct  >  1:355701/1‑274 (MQ=255)                                                                                                                                                                                                                                                                aCGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCGCGCCTTATGGCATTACCATCGGGCCTCtt                                                                                                                                               <  1:505471/129‑1 (MQ=21)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                             GCTGGATGTTCTGCACGAGCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCT  >  CP009273/2284452‑2284976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.