New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2284708	48 (1.200)	10 (0.260)	5/296	NT	17.3%	noncoding (77/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	CP009273	= 2284743	50 (1.300)					noncoding (112/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site

GCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACAC  >  CP009273/2284470‑2285009                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           gCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACACTAAAAATAGCCCGATGGATTTATGATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtttt                                                                                                                                                                                                                                                                            >  1:380510/1‑274 (MQ=255)                                gCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCNCCATTCTGTTCCTGCAACAGCGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                                                                                                                                                                                             <  1:559069/274‑1 (MQ=255)                                 ccTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACCCCGCATCCgg                                                                                                                                                                                                                                           >  1:278459/1‑275 (MQ=255)                                        gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAc                                                                                                                                                                                                                                    <  1:144093/275‑1 (MQ=255)                                           gAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCTCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGAGTTCACGCCGCATCCGGCATAAACTaa                                                                                                                                                                                                                                 >  1:406780/1‑275 (MQ=255)                                                      aGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACGGCCTGATGCGCTACCCTTATCAGGCCTACTTGGATCGACCAATTTTTTCAATTTCCACAATTTTTTATGCCGTATAAGGATTGCACGCCGCATCCGGCATACACTAAGCGCACtttt                                                                                                                                                                                                                       >  2:715734/1‑273 (MQ=255)                                                             agctaaaGTNCATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACCCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGt                                                                                                                                                                                                               <  2:278454/271‑1 (MQ=255)                                                                         tatTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATAAGGCCTACGTGGATCGAACAATTTATTGAATTTACACAATTTTGTAGGCGGGAGAAGGCGATCACGCCCCATCCGGCAGAAACTAAGCGGACGTGGTAAACATTCTAGCCCGGTg                                                                                                                                                                                                    >  2:649369/1‑274 (MQ=38)                                                                             cGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCTGCATAAACTAAGCGCACTAATTCAACATTCAAAccctttttcatc                                                                                                                                                                                               >  2:562607/1‑266 (MQ=37)                                                                                                  aaTGTCCGCTCTGGAGGGGCGGCCACCATTCTGTTACTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTAACATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCATCTTtttatt                                                                                                                                                                          <  1:715748/275‑1 (MQ=255)                                                                                                              cgcgTGGCGGCCACCATTCTGTTCCTGGAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATAACCATCGGACCTCTTTTTATTTACTCTCCTacg                                                                                                                                                              >  1:424592/1‑275 (MQ=255)                                                                                                                       gcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGAAAAACGCAAAACTGCCTGATGAGCTACGCTTATCAGGCCTACGTGGATCGATAAATTTATTGAATTTACACAATTTTGTAGGCCGGCAAAGGCGTTCACGCCGCAACCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGACCGATGGCATCACCATCGGGCATCTTTTTATTTACTCTCCAGCGGCGACAAAt                                                                                                                                                     >  1:262239/1‑275 (MQ=255)                                                                                                                         caccaTTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATACACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGaacaaagt                                                                                                                                                   >  1:444988/1‑268 (MQ=255)                                                                                                                                      cTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACNCTTATCAGGCCTACGTGGAGCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTgcg                                                                                                                                      <  1:562619/275‑1 (MQ=255)                                                                                                                                          aacaacGCGGGGCACAATAAAAATAGCCCGATGGACTTAGCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCAt                                                                                                                                                                                                <  1:412310/213‑1 (MQ=255)                                                                                                                                                      cacaATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATATTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAAt                                                                                                                      <  1:649383/275‑1 (MQ=255)                                                                                                                                                        caATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTGGTCAACAGTCTAGc                                                                                                                                                                                                          <  1:208301/189‑1 (MQ=255)                                                                                                                                                                attgCCCGATGGATTTATCATAGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCTCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACg                                                                                                             <  1:244669/271‑1 (MQ=255)                                                                                                                                                                  aGCCCGATGGATTTAGCATCGGGCTGAGATTTAGGAAAAACGTAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATGTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                                                                                                                                                                                                               <  2:684617/142‑1 (MQ=21)                                                                                                                                                                   gCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTtttatt                                                                                                                                                                          >  2:120695/1‑210 (MQ=255)                                                                                                                                                                     ccGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcgg                                                                                                                                                             >  2:271414/1‑221 (MQ=255)                                                                                                                                                                       gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTAct                                                                                                                                                                      <  1:120696/210‑1 (MQ=255)                                                                                                                                                                         tGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGAc                                                                                                                                                         <  1:271418/221‑1 (MQ=255)                                                                                                                                                                                     cGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATgg                                                                                                                                                                                                   >  1:614989/1‑167 (MQ=255)                                                                                                                                                                                         cTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATc                                                                                                                                                                                               <  2:614976/167‑1 (MQ=255)                                                                                                                                                                                                  aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATg                                                                                                                                                                                                    >  1:257805/1‑153 (MQ=255)                                                                                                                                                                                                      cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCAt                                                                                                                                                                                                <  2:257802/153‑1 (MQ=255)                                                                                                                                                                                                        aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGtt                                                                                                                                                                                                                                                         >  1:234970/1‑94 (MQ=255)                                                                                                                                                                                                        aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTaa                                                                                                                                                                                                                                 >  2:469410/1‑118 (MQ=255)                                                                                                                                                                                                         aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCa                                                                                                                                                                                              >  2:612461/1‑152 (MQ=255)                                                                                                                                                                                                            cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCAcg                                                                                                                                                                                                                                                     <  2:234968/94‑1 (MQ=255)                                                                                                                                                                                                            cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAgcgc                                                                                                                                                                                                                             <  1:469417/118‑1 (MQ=255)                                                                                                                                                                                                             aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCAt                                                                                                                                                                                          <  1:612474/152‑1 (MQ=255)                                                                                                                                                                                                                                         ggCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTa                                                                                         <  1:430905/221‑1 (MQ=255)                                                                                                                                                                                                                                          gCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGcc                                                                                                                                                                                    >  2:505462/1‑129 (MQ=255)                                                                                                                                                                                                                                          gCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCCATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCgctgctgct                                   >  1:355701/1‑274 (MQ=255)                                                                                                                                                                                                                                              aCGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCGCGCCTTATGGCATTACCATCGGGCCTCtt                                                                                                                                                                                <  1:505471/129‑1 (MQ=21)                                                                                                                                                                                                                                                    atcgatcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGcc                                                                                                                                          >  2:202226/1‑161 (MQ=255)                                                                                                                                                                                                                                                        atcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTgcg                                                                                                                                      <  1:202228/161‑1 (MQ=255)                                                                                                                                                                                                                                                         tcAATTTATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcag                                                                                                                                                                                                                     <  1:291336‑M2/81‑56 (MQ=255)                                                                                                                                                                                                                                                         tcAATTTATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttg                                                                                                                                                                                                                                  <  1:188057‑M2/68‑43 (MQ=255)                                                                                                                                                                                                                                                         tcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAg                                                                                                                                                                                                           >  1:402729/1‑91 (MQ=255)                                                                                                                                                                                                                                                          cAATTTATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcagcccgatgataaatccatcgggctatttttattgtgccccg                                                                                                                                                                             <  1:411065‑M2/120‑96 (MQ=255)                                                                                                                                                                                                                                                          cAATTTATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcag                                                                                                                                                                                                                     <  1:531822‑M2/80‑56 (MQ=255)                                                                                                                                                                                                                                                          cAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTa                                                                                                                                                                                                            >  2:732386/1‑89 (MQ=255)                                                                                                                                                                                                                                                          cAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTa                                                                                                                                                                                                            >  2:531661/1‑89 (MQ=255)                                                                                                                                                                                                                                                             tttATTGAATTTACACAATTTTgtaggcctgatcagcgtagcgcatcaggcagttttgcgtttgtcataaatctcagcccg                                                                                                                                                                                                                 >  1:706688‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                             tttATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcagcccg                                                                                                                                                                                                                 >  2:291331‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                             tttATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcat                                                                                                                                                                                                                              >  2:188055‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                             tttATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCg                                                                                                                                                                                                       <  2:402722/91‑1 (MQ=255)                                                                                                                                                                                                                                                             tgtatTGAATTTGCACGCTTTTgtaggcctgataagcgtagcgcatcag                                                                                                                                                                                                                                                 >  1:53182‑M2/3‑22 (MQ=255)                                                                                                                                                                                                                                                              ttATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcagcccgatgataaatccatcgggctatttttattgtgccccgcgtt                                                                                                                                                                         >  2:411058‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                                              ttATTGAATTTACACAATTTTgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcataaatctcagcccg                                                                                                                                                                                                                 >  2:531813‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                                              ttATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGccc                                                                                                                                                                                                        <  1:732400/89‑1 (MQ=255)                                                                                                                                                                                                                                                              ttATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGcca                                                                                                                                                                                                        <  1:531670/89‑2 (MQ=255)                                                                                                                                                                                                                                                                aTTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcgg                                                                                                                                                             >  2:549875/1‑130 (MQ=255)                                                                                                                                                                                                                                                                   gAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACAACATCCCCCCACCGGCAAAGCCTTCGCCAAATCGCGGCTGCTCAAAGGCTCTCAACGCCTACagggat         >  2:199888/1‑270 (MQ=255)                                                                                                                                                                                                                                                                    aaTTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGAc                                                                                                                                                         <  1:549886/130‑1 (MQ=255)                                                                                                                                                                                                                                                                         acacAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAt                                                                                                                                                                                                     >  2:419456/1‑81 (MQ=255)                                                                                                                                                                                                                                                                          cacaATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCacac  <  1:199890/275‑1 (MQ=255)                                                                                                                                                                                                                                                                             aaTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCa                                                                                                                                                                                                 <  1:419463/81‑1 (MQ=255)                                                                                                                                                                                                                                                                                  tgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgtcat                                                                                                                                                                                                                              <  2:297444‑M2/47‑47 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           GCTGGCACAGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACAC  >  CP009273/2284470‑2285009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.