New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2358074 =	29 (0.720)	4 (0.100)	3/298	NT	14.6%	coding (42/426 nt)	nudI	nucleoside triphosphatase
	?	CP009273	2358268 =	19 (0.490)					coding (236/426 nt)	nudI	nucleoside triphosphatase

ATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCAAGGAAGAGATTTATATGAT  >  CP009273/2357802‑2358307                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          aTTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGNAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATgg                                                                                                                                                                                                                                         <  1:533598/275‑1 (MQ=255)                                     aaaaaGGATATAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAatgat                                                                                                                                                                                                                                           <  2:33097/237‑1 (MQ=255)                                                                        tcttAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATgg                                                                                                                                                                                                                                         <  1:320837/204‑1 (MQ=255)                                                                                                                         caAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATgg                                                                                                                                                                                                                                         <  1:479973/155‑1 (MQ=255)                                                                                                                                              ttATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTGGCGAAGAACTGGNGGAActtcg                                                                                            >  2:271146/1‑271 (MQ=255)                                                                                                                                              ttATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGACGACGATCGCGGCGTTTTACCCGGTCAATGGGCGATTTCGGGTGGCTGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAAAAgca                                                                                            >  1:101873/1‑274 (MQ=255)                                                                                                                                                   atcGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCtt                                                                                                                                                                                                                                    >  2:222605/1‑134 (MQ=255)                                                                                                                                                   atcGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTa                                                                                                                                                                                                                                   >  1:28461/1‑135 (MQ=255)                                                                                                                                                   atcGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCATGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGGTGAGCCTGGCGAACGAATTGATTATGAACTACGCCGCGAACTTCGCTAAAAACtttgactactcta                                                                                            >  2:371969/1‑258 (MQ=255)                                                                                                                                                       cAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATgg                                                                                                                                                                                                                                         <  2:261696/125‑1 (MQ=255)                                                                                                                                                       cAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTAttt                                                                                                                                                                                                                                <  1:222607/134‑1 (MQ=255)                                                                                                                                                       cAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTg                                                                                                                                                                                                                               <  2:28460/135‑1 (MQ=255)                                                                                                                                                              gaTTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATc                                                                            <  1:271150/275‑1 (MQ=255)                                                                                                                                                               aTTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTCTTCCCCGGTCAATGGGCGATTTCGGGt                                                                                                                                                                      >  2:81141/1‑184 (MQ=255)                                                                                                                                                                  acgcgtagtcctgaaactcttcgtttattttcacttctcggttggcagaaacgcagtcaaaaatcaggtaaatcatataaatctcttccttgcgaccatctgcatacgtctTGGt                                                                                                                                                                                                                                        >  1:654813‑M1/112‑115 (MQ=255)                                                                                                                                                                   cTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTCTTCCCCGGTCAATGGGCGATTTCGGGTggcg                                                                                                                                                                  <  1:81142/184‑1 (MQ=255)                                                                                                                                                                                                            tttCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCaa                                         <  1:82102/264‑1 (MQ=255)                                                                                                                                                                                                              tCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCgatga                                                     >  1:302539/1‑250 (MQ=255)                                                                                                                                                                                                                  tttatttaTAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATAtt                                                 <  2:302534/250‑1 (MQ=255)                                                                                                                                                                                                                  tttatttaTAAGGAAGATCCCTGGGCGAGAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATNCGCGAAGAACTGGGAGAACAGATGCTTTTGACAGAAATCACGACGTGGACCTTCAGCGATGATATTAGACCAAAAAAGTAAGCAGAAGGTc                        >  1:499149/1‑275 (MQ=255)                                                                                                                                                                                                                                 tatCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTggcg                                                                                                                                                                  >  1:1341/1‑122 (MQ=255)                                                                                                                                                                                                                                     ccTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGt                                                                                                                                                              <  2:1341/122‑1 (MQ=255)                                                                                                                                                                                                                                        gtgCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATTGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCAAGGAAGAGATTTATATGAt  <  1:371976/275‑1 (MQ=255)                                                                                                                                                                                                                                        gtgCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAgctg                                                                                           >  2:285679/1‑186 (MQ=255)                                                                                                                                                                                                                                         tgCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTa                                                                                                                                                                                                                                   >  1:320927/1‑49 (MQ=255)                                                                                                                                                                                                                                           cGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTa                                                                                                                                                                                                                                   >  2:237446/1‑47 (MQ=255)                                                                                                                                                                                                                                            gACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCttt                                                                                       <  1:285684/186‑1 (MQ=255)                                                                                                                                                                                                                                             aCAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTg                                                                                                                                                                                                                               <  2:320921/49‑1 (MQ=255)                                                                                                                                                                                                                                               taaatctcttccttgcgaccatctgcatacgtctTGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATg                                                                                                                                                                                   <  1:342067‑M1/57‑1 (MQ=255)                                                                                                                                                                                                                                               taaatctcttccttgcgaccatctgcatacgtctTGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCggg                                                                                                                                                                       <  2:501989‑M1/69‑1 (MQ=255)                                                                                                                                                                                                                                               aaCGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTg                                                                                                                                                                                                                               <  1:237449/47‑1 (MQ=255)                                                                                                                                                                                                                                                   tctcttccttgcgaccatctgcatacgtctTGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCg                                                                                                                                                                               >  2:342061‑M1/31‑91 (MQ=255)                                                                                                                                                                                                                                                   tctcttccttgcgaccatctgcatacgtctTGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTCCCCCCGTCAATGTGCGATTTCGGGTggc                                                                                                                                                                   >  1:501998‑M1/31‑103 (MQ=255)                                                                                                                                                                                                                                                             tGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTg                                                                                                                                                      >  2:131245/1‑106 (MQ=255)                                                                                                                                                                                                                                                             tGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGTCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCaa                    >  1:423902/1‑236 (MQ=255)                                                                                                                                                                                                                                                             tGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCaa                    >  1:57992/1‑236 (MQ=255)                                                                                                                                                                                                                                                                 cTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGcga                                                                                                                                                  <  1:131246/106‑1 (MQ=255)                                                                                                                                                                                                                                                                  tttGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCg                                               >  2:720282/1‑204 (MQ=255)                                                                                                                                                                                                                                                                      aTTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCAcc                                           <  1:720296/204‑1 (MQ=255)                                                                                                                                                                                                                                                                              tgatgGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTNCCCCGGTCAATGGGCGATATCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCAAGGAAGAGATTta        <  1:527998/231‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          ATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATTCAAAATGATGGTGCTTATTTGCTGTGTAAAATGGCCGACGATCGCGGCGTTTTCCCCGGTCAATGGGCGATTTCGGGTGGCGGCGTGGAGCCTGGCGAACGAATTGAAGAGGCACTACGCCGCGAAATTCGCGAAGAACTGGGAGAACAGCTGCTTTTGACAGAAATCACGCCGTGGACCTTCAGCGATGATATTCGCACCAAGACGTATGCAGATGGTCGCAAGGAAGAGATTTATATGAT  >  CP009273/2357802‑2358307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.