New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2697456 =	25 (0.620)	8 (0.220)	4/284	NT	20.5%	intergenic (‑34/+238)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)
	?	CP009273	2697550 =	39 (1.060)					intergenic (‑128/+144)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)

TGCCACGGACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTC  >  CP009273/2697188‑2697651                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                    tGCCACGGACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTAAACAATACAGCACACg                                                                                                                                                                                               >  1:10624/1‑275 (MQ=255)            cgagTGGGGGGCATCCCGCTCAAAGCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGAATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTg                                                                                                                                                                                    <  2:10624/272‑1 (MQ=255)             gCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTg                                                                                                                                                                                    >  1:253817/1‑274 (MQ=255)              cGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGcaca                                                                                                                                                                                                 >  1:649307/1‑260 (MQ=255)              cGTGGCGCGCATCCGGCTCATATCGCCTTCACCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGcaca                                                                                                                                                                                                 <  2:649293/260‑1 (MQ=255)                   aggccgtCCGGCCTATCTCGCCTTCATCCACATGAGGGAAACGGTGATAATGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTCAATGTTCTAAACTCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGCTTAAAAGTGTAGCCCATCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCCACAATTCAGCACACGAAACAGACCTGATATACa                                                                                                                                                                             <  2:740169/269‑1 (MQ=255)                                                 cacGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAg                                                                                                                                                                                                     >  1:64805/1‑221 (MQ=255)                                                     aGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGcaca                                                                                                                                                                                                 <  2:64804/221‑1 (MQ=255)                                                                 aagcaagaaggctaatggccgactggtctgcgcttaagtcgcattggaggcatccattaatagccatcttcgttcacgttgtcgccgttatngcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTACGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                               >  1:551702‑M1/205‑275 (MQ=255)                                                                 aagcaagaaggcgaatggccgactggtctgcgcttaagtcgcattggcggcatccattaatagccatcttcgttcacgttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                               >  1:338698‑M1/205‑275 (MQ=255)                                                                        gcATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGCTGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATCAAGCACAGGAAACAGACCTGATATACATGCTTCTGCTAACTCCTTCGCTGCAGTTTAAGTTAACCTGTATATGGCGACCa                                                                                                                        >  1:161917/1‑275 (MQ=255)                                                                                          cTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGcgg                                                                                                      >  1:362534/1‑273 (MQ=255)                                                                                              gAACAGAGTTACCTTATAATTCTTACCGCTCAGTATGTTTACTGGTGGCAAGACGATGAGTTAATTCCTGCTGCAACAGTTCCTTATGATTAAACGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTgg                                                                                                   <  2:293199/274‑1 (MQ=255)                                                                                                    agTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGTNTGGGCAACCTg                                                                                            >  2:72569/1‑275 (MQ=255)                                                                                                            ttggcggcatccattaatagccatcttcgttcacgttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGcaca                                                                                                                                                                                                 <  1:642741‑M1/5‑1 (MQ=255)                                                                                                             aaaaTTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCa                                                                                   <  2:253814/275‑1 (MQ=255)                                                                                                                cggcatccattaatagccatcttcgttcacgttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGaa                                                                                                                                                                                             >  2:642727‑M1/158‑166 (MQ=255)                                                                                                                             gTTATGTTGACGGATGGCACGACGATGGCTTAATGCCTGCTGCCACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGAGGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCGTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgggg                                                                   <  2:627043/275‑1 (MQ=255)                                                                                                                                                  aCGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAAc                                                                                                                                                                                           >  1:239423/1‑134 (MQ=255)                                                                                                                                                      tGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGAc                                                                                                                                                                                       <  2:239420/134‑1 (MQ=255)                                                                                                                                                               gCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGtt                                 <  1:72570/275‑1 (MQ=255)                                                                                                                                                                  tgctgcAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCacac                                                                                                                                                                                                >  2:17635/1‑113 (MQ=255)                                                                                                                                                                      gcAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGaaa                                                                                                                                                                                            <  1:17635/113‑1 (MQ=255)                                                                                                                                                                               tatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                   <  2:329490‑M1/67‑1 (MQ=255)                                                                                                                                                                                   agataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                               >  1:329496‑M1/91‑161 (MQ=255)                                                                                                                                                                                       ttAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGGCGTGGCAACCTGGAGGTGCCAACCTTAAACTTAGGGGGAATATTGTAGACACAAAGACGGGGGATATCGGTAGCCGGGGGGGATTTTtctaaaaa         >  2:6227/1‑270 (MQ=255)                                                                                                                                                                                              ggtAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACAGGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTc  <  1:447629/274‑1 (MQ=255)                                                                                                                                                                                                tAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCtt                                                                                                                                                           >  1:338219/1‑120 (MQ=255)                                                                                                                                                                                                    ctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                   <  1:225357‑M1/67‑1 (MQ=255)                                                                                                                                                                                                    ccAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCt                                                                                                                                                       <  2:338213/120‑1 (MQ=255)                                                                                                                                                                                                        cgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                               >  2:225355‑M1/70‑140 (MQ=255)                                                                                                                                                                                                        cTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTa                                                                                                                                                                  >  1:150633/1‑105 (MQ=255)                                                                                                                                                                                                            cGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTg                                                                                                                                                              <  2:150632/105‑1 (MQ=255)                                                                                                                                                                                                                     cgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                   <  1:623465‑M1/67‑1 (MQ=255)                                                                                                                                                                                                                         gtgtatagaagattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                               >  2:623451‑M1/53‑123 (MQ=255)                                                                                                                                                                                                                                         cATGCGATACCAATAAATAAATGCGTCAACAATTCAg                                                                                                                                                                                                     >  1:643533/1‑37 (MQ=255)                                                                                                                                                                                                                                             cGATACCAATAAATAAATGCGTCAACAATTCAGcaca                                                                                                                                                                                                 <  2:643519/37‑1 (MQ=255)                                                                                                                                                                                                                                               aTACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACAt                                                                                                                                                                            >  2:724207/1‑56 (MQ=255)                                                                                                                                                                                                                                                   cAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGtt                                                                                                                                                                        <  1:724221/56‑1 (MQ=255)                                                                                                                                                                                                                                                              tGCGTCAACAATTCAGCACACGAAACAGACCTGata                                                                                                                                                                                 >  2:205473/1‑36 (MQ=255)                                                                                                                                                                                                                                                                  tCAACAATTCAGCACACGAAACAGACCTGATATACa                                                                                                                                                                             <  1:205475/36‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                    TGCCACGGACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTC  >  CP009273/2697188‑2697651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.