New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3060837	29 (0.720)	6 (0.160)	6/288	NT	13.6%	coding (603/741 nt)	yggE	oxidative stress defense protein
	?	CP009273	= 3060907	49 (1.310)					coding (533/741 nt)	yggE	oxidative stress defense protein

GATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCAC  >  CP009273/3060609‑3061106                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              gATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATAAGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAgcgc                                                                                                                                                                                                                                  <  1:286913/274‑1 (MQ=255)         cATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTATAACTGGAAGAACAAATCGACCTGATAATCAAACTGAATAGAGGCCTGCCCGTCAGTATCCTGGGCGGACACCGGCGGGGCAGCGGCTGTGACCAGCAGCACCAACGGGCGGGGCGGCGGGTTGGGGACAAGGTAGCAGACGCtata                                                                                                                                                                                                                          >  2:645815/1‑274 (MQ=255)             gTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTCATCCATAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCa                                                                                                                                                                                                                                 <  1:645829/263‑1 (MQ=255)                                                       aGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACAGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCt                                                                                                                                                                           >  1:159944/1‑275 (MQ=255)                                                            ttAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTtcatca                                                                                                                                                                                                                                                                              >  2:231034/1‑171 (MQ=255)                                                                cccGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCg                                                                                                                                                                                                                                                                          <  1:231036/171‑1 (MQ=255)                                                                                            tcgtgtgCTNCAGGTGTTTTAGCGGGTTGTTGAGCCCAAGGTCTTAACTGGAAGACCACTTCGACCTGTTCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCttt                                                                                                                                      <  2:265013/272‑1 (MQ=255)                                                                                             attGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagc                                                                                                                                                                                                                       >  2:190204‑M1/1‑137 (MQ=255)                                                                                               tgtgCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAACCGTTAGCCAGTTCCTGCGCCTGATGAATCGCGTTNTCAATCGCTGCNNTAGTCGCttgtt                                                                                                                                    >  2:499236/1‑271 (MQ=255)                                                                                               tgtgCTGCAGGTATTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGAGCACATCGACCTGATCATCAAACTGAATAGAGGCCTGCTCGAAAGTTTCGTGGACGGACACCGGAACGGAATAGGCTTTCATCATCCGAACCATTGAGATGGGCTGATAGTTGGAAACATGGTAGCGCACGATATAAACCGGACCACGTATACGATGAAAGCGATTCGCAAGTTCCTGCGCCGGATGAATCGCGATATAAATCGCGGCCTGAAGCGCtta                                                                                                                                      >  2:215532/1‑271 (MQ=255)                                                                                                 tgctgcAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcccaa                                                                                                                                                                                                                   <  1:190206‑M1/193‑61 (MQ=255)                                                                                                   ctgcAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAg                                                                                                                                                                                                                                     >  2:527428/1‑173 (MQ=255)                                                                                                   ctgcAGGTGTTTTAGCGGGATGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAg                                                                                                                                                                                                                                     >  1:595589/1‑173 (MQ=255)                                                                                                      cAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGa                                                                                                                                                                                                                                               >  1:42067/1‑160 (MQ=255)                                                                                                      cAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAg                                                                                                                                                                                                                                     >  2:376099/1‑170 (MQ=255)                                                                                                       aGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCa                                                                                                                                                                                                                                 <  2:595576/173‑1 (MQ=255)                                                                                                       aGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGAACACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCa                                                                                                                                                                                                                                 <  1:527437/173‑1 (MQ=255)                                                                                                       aGGTGTTTTAGC‑GGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGc                                                                                                                          <  1:252493/275‑1 (MQ=255)                                                                                                          tgtTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACa                                                                                                                                                                                                                                           <  2:42066/160‑1 (MQ=255)                                                                                                          tgtTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCa                                                                                                                                                                                                                                 <  1:376106/170‑1 (MQ=255)                                                                                                                   gggTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcc                                                                                                                                                                                                                      >  1:580102‑M1/1‑115 (MQ=255)                                                                                                                   gggTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaa                                                                                                                                                                                                  <  2:216119‑M2/192‑8 (MQ=255)                                                                                                                    ggTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagccc                                                                                                                                                                                                                     >  2:278426‑M1/1‑114 (MQ=255)                                                                                                                      ttgttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTGATCTTTATAGGCATCCGGCTGCGCCa                                                                                                            >  1:241056/1‑275 (MQ=255)                                                                                                                       tgttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcccaat                                                                                                                                                                                                                  <  2:580089‑M1/172‑62 (MQ=255)                                                                                                                       tgttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccg                                                                                                                                                                                              >  1:216121‑M2/1‑181 (MQ=255)                                                                                                                        gttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcccaatg                                                                                                                                                                                                                 <  1:278431‑M1/172‑63 (MQ=255)                                                                                                                                              gAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTa                                                                                                                                                                                                                                      >  1:13635/1‑129 (MQ=255)                                                                                                                                                  aCCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAgcgc                                                                                                                                                                                                                                  <  2:13635/129‑1 (MQ=255)                                                                                                                                                      caTCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGt                                                                                                                                                               >  1:99103/1‑192 (MQ=255)                                                                                                                                                          gACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATc                                                                                                                                                           <  2:99102/192‑1 (MQ=255)                                                                                                                                                               gATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTa                                                                                                                                                                                                                                      >  1:248939/1‑112 (MQ=255)                                                                                                                                                                   atcaAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAgcgc                                                                                                                                                                                                                                  <  2:248936/112‑1 (MQ=255)                                                                                                                                                                          tGAATAGCGGCCTGCGCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCt                                                                                                                                  >  1:524611/1‑201 (MQ=255)                                                                                                                                                                              tAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTtat                                                                                                                              <  2:524602/201‑1 (MQ=255)                                                                                                                                                                                      tGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCt                                                                                                                                                                           >  2:631893/1‑148 (MQ=255)                                                                                                                                                                                          cGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCtgatg                                                                                                                                                                       <  1:631907/148‑1 (MQ=255)                                                                                                                                                                                                            acacCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATcg                                                                                                                                                                  >  2:665602/1‑135 (MQ=255)                                                                                                                                                                                                                cGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGtt                                                                                                                                                              <  1:665616/135‑1 (MQ=255)                                                                                                                                                                                                                           cGGCTTTCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcccaatggtgcggatgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaaca                                                                                          >  1:216121‑M1/1‑11 (MQ=255)                                                                                                                                                                                                                               tttCATCgtaaactggggccggtatatagcgtgcgctaccatgtttccaactatcagcccagcccaatggtgcggatgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaacaaccc                                                                                      <  2:216119‑M1/192‑186 (MQ=255)                                                                                                                                                                                                                                 tcatcaTCCGCATCATTGGGCTGGGCTGAGAGTTGGAAACCTGGTAGAGTACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTcac  <  1:215534/274‑1 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              GATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCAC  >  CP009273/3060609‑3061106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.