New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3060837	29 (0.720)	6 (0.160)	6/288	NT	13.6%	coding (603/741 nt)	yggE	oxidative stress defense protein
	?	CP009273	= 3060907	49 (1.310)					coding (533/741 nt)	yggE	oxidative stress defense protein

AGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTAAG  >  CP009273/3060663‑3061170                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                        aGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACAGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCt                                                                                                                                                                                                                                           >  1:159944/1‑275 (MQ=255)                                      tcgtgtgCTNCAGGTGTTTTAGCGGGTTGTTGAGCCCAAGGTCTTAACTGGAAGACCACTTCGACCTGTTCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCttt                                                                                                                                                                                                      <  2:265013/272‑1 (MQ=255)                                         tgtgCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAACCGTTAGCCAGTTCCTGCGCCTGATGAATCGCGTTNTCAATCGCTGCNNTAGTCGCttgtt                                                                                                                                                                                                    >  2:499236/1‑271 (MQ=255)                                         tgtgCTGCAGGTATTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGAGCACATCGACCTGATCATCAAACTGAATAGAGGCCTGCTCGAAAGTTTCGTGGACGGACACCGGAACGGAATAGGCTTTCATCATCCGAACCATTGAGATGGGCTGATAGTTGGAAACATGGTAGCGCACGATATAAACCGGACCACGTATACGATGAAAGCGATTCGCAAGTTCCTGCGCCGGATGAATCGCGATATAAATCGCGGCCTGAAGCGCtta                                                                                                                                                                                                      >  2:215532/1‑271 (MQ=255)                                                 aGGTGTTTTAGC‑GGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGc                                                                                                                                                                                          <  1:252493/275‑1 (MQ=255)                                                             gggTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaa                                                                                                                                                                                                                                                                  <  2:216119‑M2/192‑8 (MQ=255)                                                                ttgttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTGATCTTTATAGGCATCCGGCTGCGCCa                                                                                                                                                                            >  1:241056/1‑275 (MQ=255)                                                                 tgttgATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccg                                                                                                                                                                                                                                                              >  1:216121‑M2/1‑181 (MQ=255)                                                                                                caTCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGt                                                                                                                                                                                                                               >  1:99103/1‑192 (MQ=255)                                                                                                    gACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATc                                                                                                                                                                                                                           <  2:99102/192‑1 (MQ=255)                                                                                                                    tGAATAGCGGCCTGCGCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCt                                                                                                                                                                                                  >  1:524611/1‑201 (MQ=255)                                                                                                                        tAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTtat                                                                                                                                                                                              <  2:524602/201‑1 (MQ=255)                                                                                                                                tGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCt                                                                                                                                                                                                                                           >  2:631893/1‑148 (MQ=255)                                                                                                                                    cGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCtgatg                                                                                                                                                                                                                                       <  1:631907/148‑1 (MQ=255)                                                                                                                                                      acacCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATcg                                                                                                                                                                                                                                  >  2:665602/1‑135 (MQ=255)                                                                                                                                                          cGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGtt                                                                                                                                                                                                                              <  1:665616/135‑1 (MQ=255)                                                                                                                                                                           tcatcaTCCGCATCATTGGGCTGGGCTGAGAGTTGGAAACCTGGTAGAGTACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTcac                                                                  <  1:215534/274‑1 (MQ=255)                                                                                                                                                                                 tcCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCaga                                                                                                                                                                                                                                         >  2:278437/1‑101 (MQ=255)                                                                                                                                                                                 tcCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGATGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTCCAGCGCGCCACCCAGTCAGGAATTCAGTTTGTCTAACTGCCGGAGCGTGACTTCCACCTTTCTcacacccccg                                                           >  1:258719/1‑269 (MQ=255)                                                                                                                                                                                    aaaactttggaaagggctgTGAGTNGTAAACAGGGTAGCGCACTCTATATCCCGGCCCCGGTTTAGGATGAACTCCGTTCGCCAGTGCCTGCGCCTCAGGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTATTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACATAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGt                                                          <  2:478384/260‑1 (MQ=255)                                                                                                                                                                                     cACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGaa                                                                                                                                                                                                                                     <  1:278442/101‑1 (MQ=255)                                                                                                                                                                                        cATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaac                                                                                                                                                           <  1:278431‑M2/172‑111 (MQ=255)                                                                                                                                                                                         aTTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaaca                                                                                                                                                          <  2:580089‑M2/172‑112 (MQ=255)                                                                                                                                                                                          ttGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaacaacccgctaaaacacctgcagca                                                                                                                                    <  1:190206‑M2/193‑134 (MQ=255)                                                                                                                                                                                          ttGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAAATCAGTTTGTCTAACTGACGGAGCGTGACtt                                                                               <  1:45471/246‑1 (MQ=255)                                                                                                                                                                                            gggctgggctGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaacaacc                                                                                                                                                       >  2:278426‑M2/1‑58 (MQ=255)                                                                                                                                                                                             ggctgggctgATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaacaaccc                                                                                                                                                      >  1:580102‑M2/1‑57 (MQ=255)                                                                                                                                                                                              gctgggctgATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACgatgaaagccgatgccgcgccggtgtccgcccaggaaacttacgagcaggccgctattcagtttgatgatcaggtcgatgtggtcttccagttagaacctgtggatcaacaacccgctaaaacacctgcagcacaat                                                                                                                                >  2:190204‑M2/1‑56 (MQ=255)                                                                                                                                                                                                  ggctgATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTgcg                                                                                                                                                                                                                                              >  1:164729/1‑79 (MQ=255)                                                                                                                                                                                                  ggctgATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACt                                          >  1:60360/1‑275 (MQ=255)                                                                                                                                                                                                      gATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCtg                                                                                                                                                                                                                                          <  2:164727/79‑1 (MQ=255)                                                                                                                                                                                                             ggAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCa                                                                                                                                                                                                                          >  2:382569/1‑88 (MQ=255)                                                                                                                                                                                                             ggAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGTCTTCAGCGCGCCATCCAGCAAGGACTTCAGTTTGTCTAACTGACGGAGCGTGCCTTCCCCCGTTCTCACAGCCCGGTAGCCTTTAAGGATAATTTTACCac                                  >  1:447528/1‑271 (MQ=255)                                                                                                                                                                                                                 aCATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCg                                                                                                                                                                                                                      <  1:382576/88‑1 (MQ=255)                                                                                                                                                                                                                    tataagcgatagCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGATCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGataat                         <  1:317191/263‑1 (MQ=255)                                                                                                                                                                                                                     ggTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGCAGCGTGACTTCCACCGTTCTCCCAGCGCGGTAGCCTTTAAGGATACTTTTAACATCCTGataatca                       >  1:417649/1‑275 (MQ=255)                                                                                                                                                                                                                               gCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGACCGTGACTTCCACCGTCCTCACAGCGCGGTAGCCTTTAAGGATACTTTTCCCCTCCTGATAACCACATTcttgc              >  2:84496/1‑274 (MQ=255)                                                                                                                                                                                                                                         ggaactaggntACGATGACAGCCTTTCTTCAGTGCCGGCGCCTGATGATTCGCGTTAGCAATCGCTGCCTTTCTGGCTTTGTATTTTTAGTCAGCCTGCTGCGCCACGCCCAGCGACACAGACCGAATCTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTTTTTCAGCGCGGTATCCTTTAAGGATTCTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTaa   <  2:267586/265‑1 (MQ=255)                                                                                                                                                                                                                                         ggCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTAcgc                                                                                                                                                                                                           >  1:255464/1‑75 (MQ=255)                                                                                                                                                                                                                                         ggCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTaa   <  1:84497/275‑1 (MQ=255)                                                                                                                                                                                                                                         ggCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTaa   >  1:350338/1‑275 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAACGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAAGTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTACACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTAAg  >  1:267590/1‑274 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCtga                                                                                                                                                                                                                                         >  2:474113/1‑43 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAAt                                                                                                                                                                                                                                    >  1:34923/1‑48 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAAt                                                                                                                                                                                                                        >  2:456900/1‑60 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGc                                                                                                                                                                                                                  >  2:97946/1‑66 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTAcgcg                                                                                                                                                                                                          >  1:27630/1‑74 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCTTCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAg                                                                                                                                 >  1:707079/1‑147 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGaca                                                                                                                                                                >  1:600140/1‑116 (MQ=255)                                                                                                                                                                                                                                           ccccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCCGTTTGTCTAACTGACGGAGCGTGACTTCCACCGCACACACAGCGCGGTACACTTTAAGGATAATTTTACCATCCTGATTATCATAATctggcctgtccattnn   >  2:317186/1‑262 (MQ=255)                                                                                                                                                                                                                                             ccAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCtt                                                                                                                                                                                                       <  2:255461/75‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGaa                                                                                                                                                                                                                                     <  1:474121/43‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATcgcg                                                                                                                                                                                                                                <  2:34922/48‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCt                                                                                                                                                                                                                    <  1:456907/60‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTa                                                                                                                                                                                                              <  1:97947/66‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCttt                                                                                                                                                                                                      <  2:27629/74‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCTTCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAgcgcg                                                                                                                             <  2:707065/147‑1 (MQ=255)                                                                                                                                                                                                                                               aGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGa                                                                                                                                                            <  2:600127/116‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                        AGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACATCGACCTGATCATCAAACTGAATAGCGGCCTGCTCGTAAGTTTCCTGGGCGGACACCGGCGCGGCATCGGCTTTCATCATCCGCACCATTGGGCTGGGCTGATAGTTGGAAACATGGTAGCGCACGCTATATACCGGCCCCAGTTTACGATGAAAGCCGTTCGCCAGTTCCTGCGCCTGATGAATCGCGTTATCAATCGCTGCCTTACGCGCTTTGTCTTTATAGGCATCCGGCTGCGCCACGCCCAGCGACACAGAACGAATTTCGTTAAGACCCGCCTTCAGCGCGCCATCCAGCAAGGAATTCAGTTTGTCTAACTGACGGAGCGTGACTTCCACCGTTCTCACAGCGCGGTAGCCTTTAAGGATACTTTTACCATCCTGATAATCATAATCTGGCTGGGTGCGTAAG  >  CP009273/3060663‑3061170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.