New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3516478 =	24 (0.600)	3 (0.080)	3/294	NT	8.6%	coding (249/2553 nt)	mrcA	fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase
	?	CP009273	3516913 =	41 (1.080)					coding (684/2553 nt)	mrcA	fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase

AATGAAACTAAATGGGAAATTTCCAGTGAAGTTCGTAAAGTATTTTTTGATCCTTGCAGTCTGTTGCATTCTGCTGGGAGCAGGCTCGATTTATGGCCTATACCGCTACATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCG  >  CP009273/3516205‑3516744                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           aaTGAAACTAAATGGGAAATTTCCAGTGAAGTTCGTAAAGTATTTTTTGATCCGTGCAGTCTGTTGCATTCTGCTGGGAGCAGGCTCGATTTATGGCCTATACCGCTACATCGAGCCACAACCGCCGGATGTGGTGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTAAcg                                                                                                                                                                                                                                                                           <  1:702982/275‑1 (MQ=255)                                                       tGCAGTCTGTTGCATTCTGCTGGGAGAAGGCTCGATTTATGGCCTATACCGCTACATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTACTCCGGTTACGTTNGATCAAATNCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGACCt                                                                                                                                                                                                                     >  1:475859/1‑275 (MQ=255)                                                              tGTTGCATTCTGCTGGGAGCAGGCTCGATTTATGGCCTATACCGCTACATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCATTGACCCGGTggggcacctgtctct                                                                                                                                                                                                              >  1:336142/1‑264 (MQ=255)                                                                                                    ataCCGCTACATCGAGCCACAACTGCCGGATGTGACGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTGTATCGCGACAGANAACAGACGNTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTgcagca                                                                                                                                                                                                          >  1:481496/1‑241 (MQ=255)                                                                                                       ccGATAAATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCa                                                                                                                                                                                   <  1:14991/261‑1 (MQ=255)                                                                                                                  aGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGAc                                                                                                                                                                                                                                  >  2:605780/1‑203 (MQ=255)                                                                                                                  aGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATAGCGAGCTGATTGCTCAATCCGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCACATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGc                                                                                                                                                                                                                                                >  1:157979/1‑189 (MQ=255)                                                                                                                      acaACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCgg                                                                                                                                                                                                                              <  1:605793/203‑1 (MQ=255)                                                                                                                                  taacggttatacatctcctggcgacccgtttctctcaggtactgcgccgagaaagctatctccggcgcgtgatagttagcgttaatcgccccagtgcttgtctgatcgaacttttgttgggtgttatacccttcatccagcatcCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCga                                                                                                                                          >  1:356840‑M1/145‑275 (MQ=255)                                                                                                                                               tacgATGTTCGATTGAAAGTTCAGTTTCAGCTTTACAGCGCCGAGGGCGAGCTGATTGATAAATACGTTGAGAAACGTCGTATTCCGGTTACGTTGGTTCAAATCCCACCGGAGATGGTGAAAGGCTTTATCGCGACAGAAGACAGCCGCGTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTGCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCt                                                                                                                             <  2:31814/272‑1 (MQ=255)                                                                                                                                                       tCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACagaaga                                                                                                                                                                                                                                                                 >  1:2979/1‑135 (MQ=255)                                                                                                                                                           cTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGc                                                                                                                                                                                                                                                             <  2:2979/135‑1 (MQ=255)                                                                                                                                                                        tGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGAACCATTACCCCGCAGCTGGGGAGAAACTTCTTCCTCAGGCCAGCACGCCCGGtgctgcc                                                                                                     >  2:732664/1‑273 (MQ=255)                                                                                                                                                                        tGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTACGTGCAGCAAGCGTGGCGCNGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCg                                                                                                     >  1:560721/1‑274 (MQ=255)                                                                                                                                                                                       ccGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGt                                                                                      >  1:163244/1‑274 (MQ=255)                                                                                                                                                                                                 gCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAAGGGCAAGTCCCATTACCCAGCAGCTGGCGAGAAACTACTTCCTCAGTCCAGAACGCACGCTGATGCGGACGATTAAGGAATTCTTCCTcgcca                                                                           >  2:515639/1‑273 (MQ=255)                                                                                                                                                                                                             aTACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGACTCGCATTGaa                                                                <  1:732678/274‑1 (MQ=255)                                                                                                                                                                                                                   tGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGCGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTATGCGGTCACGCGTCACAAGGGGCAAGTACCCTTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACCCTGCTGCGTAAGAGTAAGGAAAACTTCATCGCAATAAGCATTTAAAAgctgc                                                         >  1:636786/1‑275 (MQ=255)                                                                                                                                                                                                                     aatcgcctcagtgcgtgtctgatcgaactgttgttgggtgatatacccttcatccagcatcCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCaa                                                                                                                                                                  <  2:298964‑M1/107‑1 (MQ=255)                                                                                                                                                                                                                         gcctcagtgcgtgtctgatcgaactgttgttgggtgatatacccttcatccagcatcCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTAc                                                                                                                                                              >  1:298969‑M1/58‑168 (MQ=255)                                                                                                                                                                                                                                      gTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTa                                                                                                   >  1:121374/1‑214 (MQ=255)                                                                                                                                                                                                                                      gTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACAAGAtaca                                      >  1:122710/1‑272 (MQ=255)                                                                                                                                                                                                                                                      gcccacctcttagggTGAACGCCTTTATCGCGACTGCATACCGCCGCTTCTACGAGCATCGCGGCGTTGACCCGGTGGTGATCTTCCGGGCAGCAAGCGTGGCGCTGTTCTCCGGTCGCGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAAc                      <  2:122709/262‑1 (MQ=255)                                                                                                                                                                                                                                                               agaTGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAActtct                                                                                                                                 >  2:710336/1‑159 (MQ=255)                                                                                                                                                                                                                                                                   ggTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAgg                                                                                                                                                                       >  2:385265/1‑117 (MQ=255)                                                                                                                                                                                                                                                                   ggTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCt                                                                                                                             <  1:710350/159‑1 (MQ=255)                                                                                                                                                                                                                                                                       aaaGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCa                                                                                                                                                                   <  1:385272/117‑1 (MQ=255)                                                                                                                                                                                                                                                                          gCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCGGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACcg  <  1:279945/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           AATGAAACTAAATGGGAAATTTCCAGTGAAGTTCGTAAAGTATTTTTTGATCCTTGCAGTCTGTTGCATTCTGCTGGGAGCAGGCTCGATTTATGGCCTATACCGCTACATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCCGATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACGTTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATCACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGGGGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAGATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCG  >  CP009273/3516205‑3516744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.