New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3516478 =	24 (0.600)	3 (0.080)	3/294	NT	8.6%	coding (249/2553 nt)	mrcA	fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase
	?	CP009273	3516913 =	41 (1.080)					coding (684/2553 nt)	mrcA	fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase

GATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTGCCTATGAAGACGGTTATCGCATTTACACCACCATCACCCGCAAAGTGCAGCAGGCCGCGCAGCAGGCGGT  >  CP009273/3516649‑3517137                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                 gATTAAGGAAGTCTTCCTCGCCATTCGCATTGAACAGCTGCTGACGAAAGCCGAGCTCCTCGATCTTTATCTGACCAAGCTTTACCTTAGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATg                                                                                                                                                                                                                        <  1:686980/275‑1 (MQ=255)   tgatcgAAGTGTTCCTCTGGATTCGCATTGAACCGCTGTTGCCCTAAGACGAGCTCCTCTGGCTTTATCTTATCAAGTTTTCCCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGACCGATATGGCGGTGATGGCCGGGCTGCCGAACGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGaa                                                                                                                                                                                                                      <  2:133823/270‑1 (MQ=255)     aaGGAAGTATTAGTTGAGATTAGCATTGACCAGCTGCTGACGAAAGACGGGTTCCTCGAGCTTTTTCTGGACAAGATTTGCCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGAGCGTGCCGGCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAgg                                                                                                                                                                                                                    <  2:559907/275‑1 (MQ=255)      aGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAATTGACGATGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAggg                                                                                                                                                                                                                   >  1:639923/1‑275 (MQ=255)           gTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTNTGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTCCTGTCGCGGATGCTGGATGAAGGGTatat                                                                                                                                                                                                              <  1:515648/275‑1 (MQ=255)           gTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGGGCTGCGGCACACGTCTATTTCGGAAAAGCGGTCGACCAACTGACGCTGAACGAAATCGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGAGCGTGCCGTCGCGCGGCGTAACGTCGCGCTGGCGCGGAGGCTGGCTGCAGGGtagtt                                                                                                                                                                                                              >  2:193649/1‑272 (MQ=255)           cttttCCACGCGAGTCGCATTGCACAGCGGCGCACGTCAGACGAGTTCCTCTGGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGAACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTatat                                                                                                                                                                                                              <  2:635503/272‑1 (MQ=255)            tCTTCCTCGCGATTCGCATTGCACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAGCGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCAGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGc                                                                                                                                                                                                                              >  1:293666/1‑258 (MQ=255)            tCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGGGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAGCGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGc                                                                                                                                                                                                                              <  2:293661/258‑1 (MQ=255)             cTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGNAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCa                                                                                                                                                                                                            >  1:635517/1‑275 (MQ=255)                    ggtaTTCGCATTGAACAGCTGCTGACGAAAGACGAGTTCCTTGGTCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCcaaca                                                                                                                                                                                                     <  2:620736/272‑1 (MQ=255)                               taaaCAGCTGGTCACGAAAGACGGGTGCCGCGGGTTTTATCTGAAAAAGTTTTACCTTGGTTACCGCGCCTATGGTGTCGGGGCTGCGGCACAAGTCGATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGAt                                                                                                                                                                                           <  2:639909/272‑1 (MQ=255)                                                   acttgctCCTCGTGCTTTATCTGAACTAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGAtt                                                                                                                                                                      <  1:193651/269‑1 (MQ=255)                                                                          aaCAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTAACACGCGCCgg                                                                                                                                                >  1:106726/1‑274 (MQ=255)                                                                                         ggTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGCTGAAGGGTATATCACCCAACAACAGTTCGATCAGCCACGCACTGAGGCGATAAACGGTACATATCCCGCCCCGGCGGCTGCTTtctcaac                                                                                                                                >  2:229812/1‑272 (MQ=255)                                                                                              ccGCGCCTATGGTGTCGGTGCAGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGc                                                                                                                                                                                                                              <  1:8109/176‑1 (MQ=255)                                                                                                    cTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTatat                                                                                                                                                                                                              >  2:543284/1‑186 (MQ=255)                                                                                                        ggTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTAGCGGATGCTGGATGAAGGGTATATCAcc                                                                                                                                                                                                          <  1:543295/186‑1 (MQ=255)                                                                                                              ggTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAANAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGt                                                                                                           >  1:570832/1‑275 (MQ=255)                                                                                                                tgctgcGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTtct                                                                                                                                    <  1:33658/248‑1 (MQ=255)                                                                                                                    gcGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGAATGCTTTCTCTGCGCCGAACCTGAGCGAAATGGGGCGCCa                                                                                                     >  1:126186/1‑275 (MQ=255)                                                                                                                      ggCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAgg                                                                                                   <  1:229814/275‑1 (MQ=255)                                                                                                                       gaaaaagtaaaTTACGGAAAAACGATCGACCAACTTACGCTGAAAGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAgg                                                                                                   <  2:570819/264‑1 (MQ=255)                                                                                                                         tccactCTGTTGCGGAAAAACGGGCAACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGgag                                                                                                 <  2:106725/269‑1 (MQ=255)                                                                                                                                  tttCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGtt                                                                                                                                                                                               >  2:368511/1‑171 (MQ=255)                                                                                                                                      tcgccagctgctgggtaatggtacttgccccttgtgacgcgtgaccggagaacagcgccacgcttgctgcacggaagatccccaccgggtcaacgccgtgatgctcgtagaagcggctgtcttctgtcgcgGATGCTGGATGAAGGGTATAACACCCAACAAAAGTTCGATCAGACAAGCACTGGGGCGATTAACGCTAACTATCACGCGCCGGAGATAGCTTTCTCGGCGCAGTACCTGAGAGAAACGGGTCGCCAGGAGATGTATAACCGTTa                                                                                   >  1:356840‑M2/132‑275 (MQ=255)                                                                                                                                      ggAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGAt                                                                                                                                                                                           <  1:368518/171‑1 (MQ=255)                                                                                                                                          aaaCGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGa                                                                                                                                                                                                                          >  1:655668/1‑136 (MQ=255)                                                                                                                                              ggTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGaa                                                                                                                                                                                                                      <  2:655654/136‑1 (MQ=255)                                                                                                                                                          gtacttgccccttgtgacgcgtgaccggagaacagcgccacgcttgctgcacggaagatccccaccgggtcaacgccgtgatgctcgtagaagcggctgtcttctgtcgcgGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGc                                                                                                                                                                          >  1:298969‑M2/112‑168 (MQ=255)                                                                                                                                                              ttgccccttgtgacgcgtgaccggagaacagcgccacgcttgctgcacggaagatccccaccgggtcaacgccgtgatgctcgtagaagcggctgtcttctgtcgcgGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGAtt                                                                                                                                                                      <  2:298964‑M2/61‑1 (MQ=255)                                                                                                                                                                      aaTGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGga                                                                                                                                               >  1:164289/1‑183 (MQ=255)                                                                                                                                                                          gCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGAtt                                                                                                                                           <  2:164287/183‑1 (MQ=255)                                                                                                                                                                                        gCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGt                                                                                                                                                                                                                  >  1:77662/1‑98 (MQ=255)                                                                                                                                                                                            ccGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTatat                                                                                                                                                                                                              <  2:77661/98‑1 (MQ=255)                                                                                                                                                                                                      cTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGa                                                                                                                                                                                                                          >  1:176301/1‑76 (MQ=255)                                                                                                                                                                                                      cTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGATATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGATCCAGGAGATGTATAACCGTTATGGCGAAAGTGCCTATGAAGACGGTTAGTGCATTTACACCACCATTACCCGCAAAGTgcannnc                   >  2:208908/1‑271 (MQ=255)                                                                                                                                                                                                          cACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGaa                                                                                                                                                                                                                      <  2:176299/76‑1 (MQ=255)                                                                                                                                                                                                               tCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATc                                                                                                                                                                                                             >  2:351800/1‑80 (MQ=255)                                                                                                                                                                                                                   cccGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCAccc                                                                                                                                                                                                         <  1:351806/80‑1 (MQ=255)                                                                                                                                                                                                                       ctctACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCTaa                                                                            >  2:219687/1‑201 (MQ=255)                                                                                                                                                                                                                       ctctACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTGCCTATGAAGACGGTTATCGCATTTACACCACCATCACCCGCAAAGTGCAGCAGGCCGCGCAGCAGGCGGt  <  1:208910/275‑1 (MQ=255)                                                                                                                                                                                                                           aCTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTg                                                                        <  1:219689/201‑1 (MQ=255)                                                                                                                                                                                                                                    aTCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGa                                                                                                                                                                                                                          >  2:668827/1‑46 (MQ=255)                                                                                                                                                                                                                                       gTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGtt                                                                                                                                                                                               >  1:446768/1‑70 (MQ=255)                                                                                                                                                                                                                                        tGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGaa                                                                                                                                                                                                                      <  1:668841/46‑1 (MQ=255)                                                                                                                                                                                                                                           cGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGAt                                                                                                                                                                                           <  2:446761/70‑1 (MQ=255)                                                                                                                                                                                                                                                                         gATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTGCCTATGAAGACGGTTATCGCAtt                                                 >  1:346052/1‑178 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                 GATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATCTGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAACGGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAACCCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGTATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGATTGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTGCCTATGAAGACGGTTATCGCATTTACACCACCATCACCCGCAAAGTGCAGCAGGCCGCGCAGCAGGCGGT  >  CP009273/3516649‑3517137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.