New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3734346 =	NA (NA)	6 (0.160)	3/294	NT	18.2%	noncoding (23/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	3734395 =	27 (0.710)					noncoding (72/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AGGAGCCATTTTCCTCTGGCTATGGTTTAAGGATTTGCCCATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTT  >  CP009273/3734072‑3734609                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                        gtaataggtttattctggcttgcccgttttgttcgttggagttcgtttcgtcgcgcaaaaaggcgagggcgattaagtgcgatctgtgcttncatcgggggacgcgaccggcctgtgttgaagcctgcccgacaaaggcgttgcagtgcattgatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttttccggcgtttctcaacgccggaacagtgcgctttgtttgagccaaatgcggcgtaaacgccttatccg                                                                                                                                                                                                                                                                         >  1:509712‑M1/275‑275 (MQ=255)   aaaagctgtatgctggcttgcccgttaggtgcgaaggaggtcgtttcttcgcgcaaaaaggcgagggcgattaagtgcgatctgtgctggcatcgggagacgggaccggcctgtgttgaagcctgcccgacaaaggcgttgcagtgcatggatgtcgagaaagtgcagcggcatcggctacggnagcagcctntttgaaacgttttccggcgtttctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccGGc                                                                                                                                                                                                                                                                       <  1:480056‑M1/3‑1 (MQ=255)        ctgtatgctggcttgcccgtttggtgcgatggaggtcgtttcttcgcgcaaaaaggcgagggcgattaagtgcgatctgtgctggcatcgggagacgggaccggcctgtgttgaagcctgcccgacaaaggcgttgcagtgcatggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttttccggcggttctcaacgccggaacagtgcgctttgattatggcagatgcggcgtaaacgccttatccGGCCTAc                                                                                                                                                                                                                                                                   <  1:202214‑M1/7‑1 (MQ=255)               tctGGCTATGGTTTAAGGATTTGCCCATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCGTACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAttt                                                                                                                                                                                                                                                            <  1:597340/274‑1 (MQ=255)                             aaGGATTTGCCCATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGNAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAAATGATTTCTGCAATATATTGaa                                                                                                                                                                                                                                             >  1:535922/1‑275 (MQ=255)                                 aTTTGCCCATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGAGGCGCGACGCTTATCAGGCCTACATGATTTCTGCAATNTATTGAAttt                                                                                                                                                                                                                                          >  2:69101/1‑274 (MQ=255)                                      cccATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAg                                                                                                                                                                                                                                                                         <  1:175626/238‑1 (MQ=255)                                                   agcagcTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg                                                                                                                                                                                                                       >  1:396719/1‑275 (MQ=255)                                                                  gcCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTTACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATGTGGAGGCCGGATATAGGGTTCAcgc                                                                                                                                                                                                        >  2:47374/1‑275 (MQ=255)                                                                      gAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACNCATCAATGNATGCGCATGAACGACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGCAAGAATTTGTAGGCCGGATAAGGCGt                                                                                                                                                                                                              <  1:483042/265‑1 (MQ=255)                                                                       aaaGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                                   <  1:69102/275‑1 (MQ=255)                                                                                     gCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGNAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCaa                                                                                                                                                                                                                                                      >  1:618248/1‑210 (MQ=255)                                                                                        gATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGTATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                                                                                                                                                                                           >  1:450717/1‑202 (MQ=255)                                                                                         atagTGCCAGGGCACTACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGAAatata                                                                                                                                                                                                                                                  <  2:618235/207‑1 (MQ=255)                                                                                                                     ggCTGGATAAACCGTGGCCGCATACGCTTCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATGTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGAACTGTTCCGGCGTTGAGAAACGCCGGaa                                                                                                                                                     >  1:447758/1‑275 (MQ=255)                                                                                                                                                               tGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                                                                                                                                       >  1:555709/1‑183 (MQ=255)                                                                                                                                                                   cTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                                   <  2:555697/183‑1 (MQ=255)                                                                                                                                                                        tACCAGAGCCGGAGAAAATTGAGGCGGGAGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCNTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAAGCTGCTGCCGTAGCCGATGCCGCTGCCCTTTATCGAc                                                                                                  >  1:548313/1‑275 (MQ=255)                                                                                                                                                                          actcgccctgagaAAATTGGGGCGGGGTTGAAGATTCTGGCGGAATAGATAGTAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACAt                                                                                                <  2:118774/266‑1 (MQ=255)                                                                                                                                                                              agCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt                                                                                                                                                                                                                                >  2:375671/1‑143 (MQ=255)                                                                                                                                                                                  ggAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAg                                                                                                                                                                                                                            <  1:375678/143‑1 (MQ=255)                                                                                                                                                                                   gagaAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGACGATGCCGCTGCACTTTCTCg                                                                                                    >  1:118775/1‑262 (MQ=255)                                                                                                                                                                                                            tataggaggaggaAATAGAAAGANAATGGGCTGAAAGTCACTAAANTTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATGGCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                                               <  2:447751/267‑1 (MQ=38)                                                                                                                                                                                                               tGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCCGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTGGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCaa                                                            >  1:455025/1‑274 (MQ=255)                                                                                                                                                                                                                gggggacgggaTAGAAAGGAGATGGGCTGAAAGTTCCTAAANATTGCCTGATGCGTTACGCTTATCAGGCCTACATGATTTACGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                                               <  2:455018/261‑1 (MQ=38)                                                                                                                                                                                                                 gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGcc                                                                                                                                                                                                                                                                      <  1:10516/70‑1 (MQ=255)                                                                                                                                                                                                                      gggtgtgaaaaGTGCCTTGGCTTAAAGGAATTAAAAATTTCCTTGTGCTCTGCGCTTTTCAGTCCTACTAGATTTCTGTAATTGATTGAATTTGGAAGAATTTGTAGGTCGGATAAGGCGTTTACGCCGCATATGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAACCGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGc                                                     <  2:712755/266‑1 (MQ=255)                                                                                                                                                                                                                            aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTccc                                              <  1:47375/275‑1 (MQ=255)                                                                                                                                                                                                                                  agCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                                                                                                                                                                                           >  2:573819/1‑64 (MQ=255)                                                                                                                                                                                                                                  agCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                                                                                                                                                                                              >  1:11304/1‑93 (MQ=255)                                                                                                                                                                                                                                   gacTGGGATAAAACNCACTAAAAATTTCCTGTTGCGCTACGCTTATCAGGCCTACATGTTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTccc                                       <  2:535912/273‑1 (MQ=255)                                                                                                                                                                                                                                   gCCTGTGCTGAACGTCACTAACAATTTCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                                                                                                                                                                                                >  2:663616/1‑58 (MQ=18)                                                                                                                                                                                                                                    ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTATCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACACGCCGGACCCGCCTccc                                       >  1:69967/1‑274 (MQ=255)                                                                                                                                                                                                                                      tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCa                                                                                                                                                                                                                                                       <  1:573832/64‑1 (MQ=255)                                                                                                                                                                                                                                      tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGc                                                                                                                                                                                                                          <  2:11304/93‑1 (MQ=255)                                                                                                                                                                                                                                       gggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAttt                                                                                                                                                                                                                                                            <  1:663630/58‑1 (MQ=255)                                                                                                                                                                                                                                              ctttgtttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGaa                                                                                                                                                                                                                                             <  1:243722‑M1/29‑1 (MQ=255)                                                                                                                                                                                                                                              ctttgtttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGaa                                                                                                                                                                                                                                             <  1:124604‑M1/29‑1 (MQ=255)                                                                                                                                                                                                                                               tttgtttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGaa                                                                                                                                                                                                                                             <  2:681827‑M1/29‑1 (MQ=255)                                                                                                                                                                                                                                                  gtttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                                                                                                                                                                                         >  2:124603‑M1/34‑66 (MQ=255)                                                                                                                                                                                                                                                  gtttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                                                                                                                                                                                         >  2:243719‑M1/34‑66 (MQ=255)                                                                                                                                                                                                                                                   tttatgccagatgcggcgtaaacgccttatccGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                                                                                                                                                                                         >  1:681841‑M1/33‑65 (MQ=255)                                                                                                                                                                                                                                                                        tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAAGAGGCTGCTGCCGNAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCGCCCGCTGCCAGAACAGATAGCACATAATAGCACtaaccta  >  1:623193/1‑269 (MQ=38)                                                                                                                                                                                                                                                                             ttATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTg                                                                                                              >  1:322988/1‑162 (MQ=255)                                                                                                                                                                                                                                                                                 cAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt                                                                                                          <  2:322982/162‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                        AGGAGCCATTTTCCTCTGGCTATGGTTTAAGGATTTGCCCATTACGACCAAGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTT  >  CP009273/3734072‑3734609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.